Wall clock time and date at job start Mon Mar 30 2020 07:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47400 * 2 1 4 4 C 1.53003 * 109.47005 * 240.00235 * 2 1 3 5 5 C 1.53009 * 109.46938 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46923 * 60.00357 * 5 4 2 7 7 C 1.53003 * 109.47023 * 299.99591 * 6 5 4 8 8 C 1.52997 * 109.47204 * 120.00149 * 2 1 3 9 9 C 1.52995 * 109.47316 * 299.99758 * 8 2 1 10 10 N 1.46903 * 109.47135 * 60.00359 * 8 2 1 11 11 C 1.46893 * 111.00119 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47186 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46927 * 60.00040 * 12 11 10 14 14 C 1.52995 * 109.47137 * 300.00055 * 12 11 10 15 15 C 1.53001 * 109.47355 * 179.97438 * 12 11 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09001 * 109.46925 * 300.00119 * 1 2 3 25 25 H 1.09006 * 109.47115 * 59.99627 * 1 2 3 26 26 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47071 * 60.00112 * 4 2 1 28 28 H 1.08993 * 109.47166 * 299.99579 * 4 2 1 29 29 H 1.09001 * 109.47113 * 300.00105 * 5 4 2 30 30 H 1.09003 * 109.46682 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.47039 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47431 * 59.99386 * 6 5 4 33 33 H 1.09001 * 109.47305 * 300.00429 * 7 6 5 34 34 H 1.09006 * 109.47071 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47684 * 179.97438 * 9 8 2 36 36 H 1.09001 * 109.47417 * 300.00228 * 9 8 2 37 37 H 1.09007 * 109.46828 * 60.00131 * 9 8 2 38 38 H 1.00899 * 111.00178 * 56.04251 * 10 8 2 39 39 H 1.09002 * 109.47091 * 59.99841 * 11 10 8 40 40 H 1.08992 * 109.47497 * 299.99732 * 11 10 8 41 41 H 1.08998 * 109.46768 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.47095 * 300.00011 * 13 12 11 43 43 H 1.09000 * 109.47156 * 60.00290 * 13 12 11 44 44 H 1.09002 * 109.47384 * 299.99783 * 14 12 11 45 45 H 1.08997 * 109.47386 * 60.00317 * 14 12 11 46 46 H 1.09007 * 109.47390 * 179.97438 * 14 12 11 47 47 H 1.09007 * 109.46922 * 59.99890 * 15 12 11 48 48 H 1.09003 * 109.46836 * 300.00646 * 15 12 11 49 49 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0005 7 6 3.5705 -0.7204 1.2488 8 6 2.0400 -0.7213 1.2492 9 6 1.5301 -0.0001 2.4984 10 7 1.5504 -2.1063 1.2491 11 6 2.0209 -2.8311 2.4370 12 6 1.4914 -4.2661 2.4019 13 6 2.0017 -4.9672 1.1414 14 6 -0.0384 -4.2451 2.3900 15 6 1.9820 -5.0212 3.6389 16 6 1.4609 -6.4348 3.6039 17 1 0.8422 -6.7621 2.7815 18 6 1.7742 -7.3103 4.6220 19 7 2.5282 -6.9119 5.6232 20 14 1.1278 -9.0624 4.5790 21 1 -0.1866 -9.1221 5.2674 22 1 0.9677 -9.4965 3.1679 23 1 2.0885 -9.9614 5.2675 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6766 -0.2073 -2.1393 28 1 1.6767 -1.7488 -1.2493 29 1 3.9330 0.3072 -1.2498 30 1 3.9333 -1.2341 -2.1399 31 1 5.1705 -1.4408 -0.0004 32 1 3.7174 -2.4694 -0.0003 33 1 3.9335 0.3074 1.2487 34 1 3.9346 -1.2338 2.1388 35 1 1.8930 -0.5141 3.3884 36 1 1.8934 1.0276 2.4985 37 1 0.4400 -0.0001 2.4985 38 1 1.8198 -2.5850 0.4028 39 1 1.6570 -2.3318 3.3351 40 1 3.1107 -2.8457 2.4458 41 1 1.6241 -5.9894 1.1162 42 1 1.6525 -4.4294 0.2599 43 1 3.0915 -4.9822 1.1499 44 1 -0.4019 -3.7456 3.2880 45 1 -0.3875 -3.7074 1.5085 46 1 -0.4157 -5.2675 2.3645 47 1 1.6188 -4.5218 4.5372 48 1 3.0719 -5.0360 3.6469 49 1 2.7482 -7.5278 6.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308751390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:54 Heat of formation + Delta-G solvation = -54.526165 kcal Electronic energy + Delta-G solvation = -22535.713303 eV Core-core repulsion = 19688.311380 eV Total energy + Delta-G solvation = -2847.401923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16441 -38.41481 -35.08973 -34.19411 -33.47248 -31.17800 -28.83021 -28.19734 -27.83044 -27.00834 -26.09965 -24.45610 -22.42799 -21.76196 -19.51581 -19.38378 -18.32254 -17.02684 -16.53886 -16.02929 -15.74116 -15.66622 -15.04398 -14.87332 -14.76927 -14.54951 -14.21310 -13.88447 -13.55944 -13.38808 -13.06710 -12.86755 -12.83883 -12.67535 -12.63055 -12.58082 -12.54175 -12.25111 -12.23595 -12.12433 -12.05239 -11.86090 -11.66446 -11.36420 -11.26141 -10.93807 -10.85975 -10.69101 -10.62122 -10.50115 -9.07601 -8.13553 -6.20498 1.40539 1.41131 1.51667 2.43855 3.20287 3.36592 3.77888 3.84899 3.91333 4.17312 4.22815 4.26525 4.30412 4.39846 4.52085 4.54717 4.61585 4.68905 4.76515 4.79156 4.81701 4.93359 4.96318 4.97816 5.02917 5.07595 5.10463 5.16724 5.18129 5.22186 5.23652 5.25423 5.30246 5.34982 5.47431 5.51479 5.54572 5.55825 5.58841 5.60941 5.70285 5.74528 5.90068 5.94019 6.26675 6.41526 6.68996 6.94766 7.46772 8.98851 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029653 B = 0.004562 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.024986 B = 6136.447040 C = 6215.830048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.147 4.147 8 C 0.117 3.883 9 C -0.140 4.140 10 N -0.664 5.664 11 C 0.082 3.918 12 C -0.053 4.053 13 C -0.119 4.119 14 C -0.105 4.105 15 C 0.041 3.959 16 C -0.512 4.512 17 H 0.065 0.935 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.275 1.275 22 H -0.262 1.262 23 H -0.287 1.287 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.341 0.659 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.036 0.964 47 H -0.018 1.018 48 H -0.019 1.019 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 15.571 -14.456 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.186 4.186 8 C 0.026 3.974 9 C -0.198 4.198 10 N -0.298 5.298 11 C -0.047 4.047 12 C -0.053 4.053 13 C -0.177 4.177 14 C -0.162 4.162 15 C 0.003 3.997 16 C -0.550 4.550 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.187 1.187 23 H -0.213 1.213 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.000 1.000 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.333 15.672 -14.044 21.086 hybrid contribution 1.070 -1.366 0.730 1.883 sum -0.262 14.306 -13.314 19.544 Atomic orbital electron populations 1.21737 0.94580 1.02108 1.01047 1.21071 0.96231 0.98697 0.92830 0.90426 1.21628 0.95180 1.00769 0.97808 1.21509 0.95779 1.00846 0.96921 1.21532 1.00344 0.98941 0.95175 1.22232 0.97445 1.01262 0.97689 1.20957 0.91362 0.89096 0.95988 1.21920 1.01851 0.99739 0.96274 1.60740 1.62654 1.01944 1.04443 1.21813 0.95757 0.93299 0.93853 1.20469 0.96184 0.93132 0.95543 1.21658 0.99214 1.00271 0.96508 1.21479 0.94354 0.99939 1.00409 1.18997 0.93793 0.94428 0.92447 1.21614 1.30123 0.96949 1.06360 0.91657 1.25922 0.95751 1.02985 0.95443 1.70117 1.39234 1.37041 1.11602 0.85582 0.78000 0.79713 0.78591 1.20123 1.18653 1.21254 0.92984 0.92536 0.92663 0.90677 0.92445 0.91251 0.91451 0.92008 0.93443 0.90786 0.93773 0.94351 0.91306 0.91777 0.83706 0.92650 0.96732 0.93563 0.91747 0.94775 0.95271 0.91327 0.94484 0.99989 1.00078 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.68 71.98 0.62 -1.93 16 2 C -0.07 -1.27 2.07 -10.79 -0.02 -1.30 16 3 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -1.97 4.94 30.60 0.15 -1.82 16 5 C -0.11 -1.89 5.92 30.60 0.18 -1.71 16 6 C -0.12 -2.58 5.66 30.59 0.17 -2.41 16 7 C -0.15 -3.35 4.36 30.61 0.13 -3.22 16 8 C 0.12 2.65 0.37 3.54 0.00 2.66 16 9 C -0.14 -3.28 7.88 71.98 0.57 -2.71 16 10 N -0.66 -17.96 4.40 -470.12 -2.07 -20.03 16 11 C 0.08 2.85 3.86 86.30 0.33 3.19 16 12 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 13 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 14 C -0.10 -4.03 8.06 71.98 0.58 -3.45 16 15 C 0.04 2.17 4.04 29.85 0.12 2.29 16 16 C -0.51 -28.76 7.65 25.60 0.20 -28.56 16 17 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 19 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 20 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H 0.05 0.98 6.43 -2.39 -0.02 0.97 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.06 1.10 6.57 -2.39 -0.02 1.09 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.15 6.77 -2.39 -0.02 1.13 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.21 6.41 -2.38 -0.02 1.19 16 35 H 0.04 1.04 6.40 -2.39 -0.02 1.02 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.52 6.43 -2.38 -0.02 1.50 16 38 H 0.34 8.95 3.23 -89.69 -0.29 8.67 16 39 H 0.06 2.06 6.30 -2.39 -0.02 2.05 16 40 H 0.01 0.54 6.31 -2.39 -0.02 0.52 16 41 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 42 H 0.06 1.95 6.57 -2.39 -0.02 1.93 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 46 H 0.04 1.52 6.62 -2.38 -0.02 1.50 16 47 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 48 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 49 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -61.98 347.56 4.89 -57.09 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.60 Total: 18.59 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 4.04 Total: -44.77 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -1.78 Total: -77.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -61.98 4.89 -57.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -61.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds