Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47278 * 239.99526 * 2 1 3 5 5 C 1.52999 * 109.47278 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47357 * 60.00108 * 5 4 2 7 7 C 1.52998 * 109.47190 * 300.00157 * 6 5 4 8 8 C 1.52999 * 109.47099 * 59.99684 * 7 6 5 9 9 C 1.53006 * 109.47109 * 60.00130 * 8 7 6 10 10 N 1.46904 * 109.47392 * 179.97438 * 8 7 6 11 11 C 1.46896 * 111.00095 * 300.00291 * 10 8 7 12 12 C 1.52997 * 109.47114 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46991 * 60.00363 * 12 11 10 14 14 C 1.52997 * 109.47232 * 299.99800 * 12 11 10 15 15 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 12 11 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47046 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46873 * 120.00118 * 20 18 16 23 23 H 1.48497 * 109.47510 * 240.00153 * 20 18 16 24 24 H 1.09000 * 109.47133 * 300.00398 * 1 2 3 25 25 H 1.08997 * 109.46976 * 60.00400 * 1 2 3 26 26 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47405 * 300.00334 * 4 2 1 28 28 H 1.09007 * 109.47065 * 60.00119 * 4 2 1 29 29 H 1.09008 * 109.47322 * 180.02562 * 5 4 2 30 30 H 1.09004 * 109.47367 * 299.99856 * 5 4 2 31 31 H 1.09007 * 109.47035 * 60.00341 * 6 5 4 32 32 H 1.08996 * 109.47707 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47232 * 299.99566 * 7 6 5 34 34 H 1.08997 * 109.47408 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47032 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46974 * 299.99608 * 9 8 7 37 37 H 1.08997 * 109.47106 * 60.00197 * 9 8 7 38 38 H 1.00899 * 110.99247 * 63.95355 * 10 8 7 39 39 H 1.09001 * 109.47267 * 59.99263 * 11 10 8 40 40 H 1.09004 * 109.47041 * 299.99667 * 11 10 8 41 41 H 1.09000 * 109.47160 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46719 * 299.99711 * 13 12 11 43 43 H 1.08993 * 109.47839 * 59.99553 * 13 12 11 44 44 H 1.09001 * 109.47375 * 299.99867 * 14 12 11 45 45 H 1.09002 * 109.46777 * 60.00422 * 14 12 11 46 46 H 1.09000 * 109.47140 * 179.97438 * 14 12 11 47 47 H 1.09001 * 109.46801 * 300.00272 * 15 12 11 48 48 H 1.09001 * 109.46998 * 59.99868 * 15 12 11 49 49 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2494 6 6 4.0806 -1.4415 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0406 -0.7208 1.2493 9 6 1.5311 -2.1635 1.2497 10 7 1.5508 -0.0288 2.4490 11 6 2.0224 -0.6950 3.6704 12 6 1.4937 0.0530 4.8959 13 6 -0.0361 0.0526 4.8729 14 6 2.0038 1.4953 4.8723 15 6 1.9843 -0.6412 6.1680 16 6 1.4642 0.0959 7.3751 17 1 0.8452 0.9718 7.2477 18 6 1.7776 -0.3483 8.6421 19 7 2.5309 -1.4152 8.7973 20 14 1.1322 0.5650 10.1384 21 1 0.3140 1.7228 9.6966 22 1 0.2942 -0.3506 10.9537 23 1 2.2750 1.0485 10.9542 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9334 -1.2343 -2.1397 30 1 3.9330 0.3071 -1.2498 31 1 3.7176 -2.4694 0.0000 32 1 5.1705 -1.4408 -0.0002 33 1 3.9335 0.3075 1.2487 34 1 3.9339 -1.2340 2.1390 35 1 0.4410 -2.1639 1.2495 36 1 1.8944 -2.6774 0.3597 37 1 1.8948 -2.6770 2.1397 38 1 1.8200 0.9436 2.4406 39 1 3.1122 -0.6945 3.6869 40 1 1.6593 -1.7227 3.6870 41 1 -0.4127 0.5851 5.7462 42 1 -0.3859 0.5470 3.9666 43 1 -0.3995 -0.9748 4.8897 44 1 3.0937 1.4956 4.8887 45 1 1.6539 1.9896 3.9660 46 1 1.6269 2.0283 5.7451 47 1 1.6206 -1.6686 6.1845 48 1 3.0742 -0.6414 6.1846 49 1 2.7517 -1.7275 9.6887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308751392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = -40.393415 kcal Electronic energy + Delta-G solvation = -22223.020271 eV Core-core repulsion = 19376.231191 eV Total energy + Delta-G solvation = -2846.789081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07191 -37.07555 -33.98503 -32.65164 -32.12539 -29.42778 -27.60717 -26.84477 -26.29368 -25.81159 -24.91558 -22.78902 -21.32322 -20.98891 -18.24910 -17.84797 -16.22462 -16.00470 -15.15397 -14.97196 -14.51470 -14.17059 -13.86343 -13.72837 -13.35359 -13.05449 -12.70575 -12.57791 -12.43373 -11.99157 -11.95405 -11.86529 -11.83510 -11.72039 -11.21794 -11.09914 -10.94709 -10.80452 -10.73417 -10.63554 -10.46920 -10.32371 -10.20031 -10.16138 -10.03039 -9.93519 -9.60391 -8.95210 -8.76920 -8.29265 -7.88335 -5.93710 -3.93478 3.33906 3.41746 3.45370 4.37958 4.52326 4.63745 4.67464 4.97400 5.04793 5.15713 5.32646 5.33963 5.42258 5.44930 5.49232 5.62541 5.69022 5.78157 5.83636 5.84236 5.90399 5.93743 5.99259 6.02537 6.04217 6.09295 6.13770 6.21914 6.26839 6.31506 6.41275 6.48204 6.48950 6.57749 6.63398 6.72324 6.86129 6.88189 7.26452 7.31466 7.32610 7.53918 7.73722 7.81433 7.90925 8.07231 8.52148 9.12346 9.69274 11.18028 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.004150 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.171869 B = 6745.889097 C = 7048.359793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.149 4.149 8 C 0.120 3.880 9 C -0.143 4.143 10 N -0.673 5.673 11 C 0.067 3.933 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.034 3.966 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.335 0.665 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.062 0.938 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 1.355 -19.856 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.189 4.189 8 C 0.029 3.971 9 C -0.200 4.200 10 N -0.304 5.304 11 C -0.062 4.062 12 C -0.058 4.058 13 C -0.172 4.172 14 C -0.185 4.185 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.608 0.930 -19.709 19.741 hybrid contribution 0.832 0.652 1.036 1.480 sum 0.224 1.582 -18.673 18.742 Atomic orbital electron populations 1.21765 0.94635 1.01828 1.01441 1.21062 0.96268 0.98663 0.93432 0.91888 1.21648 0.95231 1.00994 0.97408 1.21536 0.95945 1.00536 0.97623 1.21526 0.99772 0.99679 0.94499 1.22310 0.97609 1.00626 0.98305 1.20839 0.91108 0.94690 0.90503 1.22016 1.01819 0.94882 1.01319 1.60762 1.62846 1.05882 1.00891 1.22165 0.96551 0.98491 0.88961 1.20618 0.95688 0.94755 0.94754 1.21585 0.95145 1.00481 0.99990 1.21760 0.99624 0.96975 1.00178 1.19119 0.95886 0.95308 0.90048 1.21291 1.30575 1.11824 0.90628 0.92272 1.25015 0.95458 0.95141 0.99009 1.69981 1.37782 1.23871 1.22169 0.86624 0.78661 0.79900 0.83347 1.19781 1.21175 1.21221 0.91182 0.94030 0.92787 0.91640 0.92321 0.92433 0.92325 0.91708 0.92555 0.92427 0.91404 0.91759 0.92479 0.92551 0.84543 0.95729 0.91408 0.92894 0.93884 0.94303 0.94239 0.94834 0.91881 0.96781 0.97037 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.69 37.16 0.32 -1.16 16 2 C -0.08 -0.80 2.14 -90.62 -0.19 -0.99 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.06 4.93 -26.73 -0.13 -1.19 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.18 5.65 -26.73 -0.15 -1.33 16 7 C -0.15 -1.78 4.49 -26.73 -0.12 -1.90 16 8 C 0.12 1.44 0.40 -131.59 -0.05 1.39 16 9 C -0.14 -1.74 7.19 37.16 0.27 -1.48 16 10 N -0.67 -9.49 4.54 -99.96 -0.45 -9.94 16 11 C 0.07 1.14 3.86 -3.83 -0.01 1.13 16 12 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 13 C -0.11 -2.23 8.06 37.16 0.30 -1.93 16 14 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.50 -13.91 7.65 -34.44 -0.26 -14.17 16 17 H 0.06 1.59 5.68 -52.48 -0.30 1.30 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H 0.07 0.85 7.61 -51.93 -0.39 0.45 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 27 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.65 6.43 -51.92 -0.33 0.32 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 35 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 36 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 37 H 0.06 0.76 6.40 -51.93 -0.33 0.43 16 38 H 0.34 4.69 6.76 -39.29 -0.27 4.42 16 39 H 0.02 0.44 6.30 -51.93 -0.33 0.11 16 40 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 41 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 42 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 46 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -28.36 346.92 -8.79 -37.15 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.07 Total: 1.17 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -0.21 Total: -24.03 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.28 Total: -36.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.36 -8.79 -37.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.244 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds