Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47278 * 239.99526 * 2 1 3 5 5 C 1.52999 * 109.47278 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47357 * 60.00108 * 5 4 2 7 7 C 1.52998 * 109.47190 * 300.00157 * 6 5 4 8 8 C 1.52999 * 109.47099 * 59.99684 * 7 6 5 9 9 C 1.53006 * 109.47109 * 60.00130 * 8 7 6 10 10 N 1.46904 * 109.47392 * 179.97438 * 8 7 6 11 11 C 1.46896 * 111.00095 * 300.00291 * 10 8 7 12 12 C 1.52997 * 109.47114 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46991 * 60.00363 * 12 11 10 14 14 C 1.52997 * 109.47232 * 299.99800 * 12 11 10 15 15 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 12 11 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47046 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46873 * 120.00118 * 20 18 16 23 23 H 1.48497 * 109.47510 * 240.00153 * 20 18 16 24 24 H 1.09000 * 109.47133 * 300.00398 * 1 2 3 25 25 H 1.08997 * 109.46976 * 60.00400 * 1 2 3 26 26 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47405 * 300.00334 * 4 2 1 28 28 H 1.09007 * 109.47065 * 60.00119 * 4 2 1 29 29 H 1.09008 * 109.47322 * 180.02562 * 5 4 2 30 30 H 1.09004 * 109.47367 * 299.99856 * 5 4 2 31 31 H 1.09007 * 109.47035 * 60.00341 * 6 5 4 32 32 H 1.08996 * 109.47707 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47232 * 299.99566 * 7 6 5 34 34 H 1.08997 * 109.47408 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47032 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46974 * 299.99608 * 9 8 7 37 37 H 1.08997 * 109.47106 * 60.00197 * 9 8 7 38 38 H 1.00899 * 110.99247 * 63.95355 * 10 8 7 39 39 H 1.09001 * 109.47267 * 59.99263 * 11 10 8 40 40 H 1.09004 * 109.47041 * 299.99667 * 11 10 8 41 41 H 1.09000 * 109.47160 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46719 * 299.99711 * 13 12 11 43 43 H 1.08993 * 109.47839 * 59.99553 * 13 12 11 44 44 H 1.09001 * 109.47375 * 299.99867 * 14 12 11 45 45 H 1.09002 * 109.46777 * 60.00422 * 14 12 11 46 46 H 1.09000 * 109.47140 * 179.97438 * 14 12 11 47 47 H 1.09001 * 109.46801 * 300.00272 * 15 12 11 48 48 H 1.09001 * 109.46998 * 59.99868 * 15 12 11 49 49 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2494 6 6 4.0806 -1.4415 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0406 -0.7208 1.2493 9 6 1.5311 -2.1635 1.2497 10 7 1.5508 -0.0288 2.4490 11 6 2.0224 -0.6950 3.6704 12 6 1.4937 0.0530 4.8959 13 6 -0.0361 0.0526 4.8729 14 6 2.0038 1.4953 4.8723 15 6 1.9843 -0.6412 6.1680 16 6 1.4642 0.0959 7.3751 17 1 0.8452 0.9718 7.2477 18 6 1.7776 -0.3483 8.6421 19 7 2.5309 -1.4152 8.7973 20 14 1.1322 0.5650 10.1384 21 1 0.3140 1.7228 9.6966 22 1 0.2942 -0.3506 10.9537 23 1 2.2750 1.0485 10.9542 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.9334 -1.2343 -2.1397 30 1 3.9330 0.3071 -1.2498 31 1 3.7176 -2.4694 0.0000 32 1 5.1705 -1.4408 -0.0002 33 1 3.9335 0.3075 1.2487 34 1 3.9339 -1.2340 2.1390 35 1 0.4410 -2.1639 1.2495 36 1 1.8944 -2.6774 0.3597 37 1 1.8948 -2.6770 2.1397 38 1 1.8200 0.9436 2.4406 39 1 3.1122 -0.6945 3.6869 40 1 1.6593 -1.7227 3.6870 41 1 -0.4127 0.5851 5.7462 42 1 -0.3859 0.5470 3.9666 43 1 -0.3995 -0.9748 4.8897 44 1 3.0937 1.4956 4.8887 45 1 1.6539 1.9896 3.9660 46 1 1.6269 2.0283 5.7451 47 1 1.6206 -1.6686 6.1845 48 1 3.0742 -0.6414 6.1846 49 1 2.7517 -1.7275 9.6887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308751392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = -54.807014 kcal Electronic energy + Delta-G solvation = -22223.645292 eV Core-core repulsion = 19376.231191 eV Total energy + Delta-G solvation = -2847.414101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06759 -38.60694 -35.35060 -34.13586 -33.41919 -30.62689 -28.79703 -28.55254 -27.85025 -27.03491 -26.12943 -24.54986 -22.34678 -21.87738 -19.47249 -19.20030 -18.33164 -17.18032 -16.51612 -16.08605 -16.01243 -15.37654 -15.13912 -14.93570 -14.52656 -14.37225 -14.23555 -13.90261 -13.62601 -13.53405 -13.29771 -12.93540 -12.85851 -12.78898 -12.66905 -12.60651 -12.50821 -12.24481 -12.16889 -11.96925 -11.93297 -11.78858 -11.49859 -11.41230 -11.10851 -11.04898 -10.96696 -10.76831 -10.60796 -10.51281 -9.09195 -8.14182 -6.21210 1.39528 1.40465 1.52809 2.43468 3.19722 3.29144 3.75373 3.81942 4.07828 4.14093 4.23364 4.27123 4.34152 4.40307 4.46350 4.48994 4.61096 4.64791 4.76897 4.80172 4.82150 4.90004 4.96158 5.00241 5.02464 5.09413 5.13746 5.15855 5.17924 5.23129 5.23429 5.25993 5.31380 5.38739 5.44282 5.51023 5.53767 5.55055 5.59739 5.61844 5.68581 5.74752 5.89405 5.93623 6.24143 6.40052 6.64912 6.94342 7.46244 8.98446 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.004150 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.171869 B = 6745.889097 C = 7048.359793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.147 4.147 8 C 0.120 3.880 9 C -0.141 4.141 10 N -0.667 5.667 11 C 0.084 3.916 12 C -0.054 4.054 13 C -0.104 4.104 14 C -0.120 4.120 15 C 0.041 3.959 16 C -0.513 4.513 17 H 0.066 0.934 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.339 0.661 39 H 0.015 0.985 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.045 0.955 47 H -0.019 1.019 48 H -0.019 1.019 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 2.753 -21.780 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.186 4.186 8 C 0.029 3.971 9 C -0.198 4.198 10 N -0.298 5.298 11 C -0.046 4.046 12 C -0.055 4.055 13 C -0.162 4.162 14 C -0.178 4.178 15 C 0.004 3.996 16 C -0.551 4.551 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.159 0.841 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.000 1.000 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.356 2.340 -21.652 21.820 hybrid contribution 1.086 0.176 1.598 1.939 sum -0.270 2.516 -20.054 20.213 Atomic orbital electron populations 1.21728 0.94524 1.01683 1.01441 1.21035 0.96264 0.98644 0.93008 0.91726 1.21635 0.95275 1.01012 0.97032 1.21520 0.95787 1.00617 0.97352 1.21516 1.00055 0.99562 0.94155 1.22260 0.97421 1.00544 0.98423 1.20931 0.91273 0.94624 0.90280 1.22001 1.01577 0.95002 1.01197 1.60711 1.62725 1.06004 1.00378 1.21806 0.95729 0.97652 0.89364 1.20489 0.96218 0.95443 0.93333 1.21478 0.94346 0.99883 1.00455 1.21665 0.99245 0.95785 1.01062 1.18997 0.93788 0.94063 0.92800 1.21656 1.30116 1.11868 0.91433 0.91616 1.25925 0.95769 0.96007 1.02426 1.70123 1.39311 1.25630 1.22947 0.85525 0.78153 0.78863 0.79305 1.18431 1.20828 1.20786 0.92655 0.92551 0.93007 0.91524 0.90846 0.90928 0.92162 0.91710 0.92185 0.92483 0.93757 0.92040 0.90711 0.94595 0.84096 0.96687 0.92674 0.94505 0.91256 0.95341 0.94750 0.91400 0.93602 1.00018 1.00076 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.69 71.98 0.63 -1.94 16 2 C -0.07 -1.31 2.14 -10.79 -0.02 -1.34 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.70 4.93 30.59 0.15 -1.55 16 5 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 6 C -0.11 -2.12 5.65 30.59 0.17 -1.95 16 7 C -0.15 -3.39 4.49 30.59 0.14 -3.25 16 8 C 0.12 2.73 0.40 3.53 0.00 2.73 16 9 C -0.14 -3.31 7.19 71.98 0.52 -2.80 16 10 N -0.67 -18.13 4.54 -470.16 -2.13 -20.26 16 11 C 0.08 2.91 3.86 86.30 0.33 3.25 16 12 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.10 -4.03 8.06 71.98 0.58 -3.45 16 14 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 15 C 0.04 2.18 4.04 29.85 0.12 2.30 16 16 C -0.51 -28.83 7.65 25.60 0.20 -28.63 16 17 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 19 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 20 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H 0.05 1.21 7.61 -2.39 -0.02 1.19 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.99 6.43 -2.39 -0.02 0.98 16 27 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.94 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.20 6.43 -2.38 -0.02 1.18 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.22 6.40 -2.39 -0.02 1.21 16 35 H 0.06 1.48 6.43 -2.38 -0.02 1.46 16 36 H 0.07 1.48 4.81 -2.39 -0.01 1.47 16 37 H 0.03 0.98 6.40 -2.39 -0.02 0.97 16 38 H 0.34 8.82 6.76 -89.69 -0.61 8.21 16 39 H 0.02 0.55 6.30 -2.39 -0.02 0.54 16 40 H 0.05 2.06 6.30 -2.38 -0.02 2.05 16 41 H 0.04 1.52 6.62 -2.39 -0.02 1.50 16 42 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 46 H 0.04 1.83 6.62 -2.39 -0.02 1.82 16 47 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 48 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -62.25 346.92 4.47 -57.78 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.30 Total: 17.44 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.99 Total: -44.09 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.85 Total: -78.16 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -62.25 4.47 -57.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.975 kcal (2) G-P(sol) polarization free energy of solvation -62.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds