Wall clock time and date at job start Mon Mar 30 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47532 * 2 1 4 4 C 1.53006 * 109.47152 * 120.00476 * 2 1 3 5 5 C 1.52999 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46898 * 299.99733 * 5 4 2 7 7 C 1.52997 * 109.47390 * 60.00176 * 6 5 4 8 8 C 1.53000 * 109.47075 * 239.99879 * 2 1 3 9 9 C 1.52994 * 109.47485 * 300.00351 * 8 2 1 10 10 N 1.46901 * 109.46851 * 60.00490 * 8 2 1 11 11 C 1.46907 * 111.00060 * 179.97438 * 10 8 2 12 12 C 1.52996 * 109.47007 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.47460 * 59.99928 * 12 11 10 14 14 C 1.53008 * 109.47234 * 299.99988 * 12 11 10 15 15 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 12 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47050 * 59.99579 * 20 18 16 22 22 H 1.48496 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46492 * 299.99554 * 20 18 16 24 24 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46954 * 300.00082 * 1 2 3 26 26 H 1.09000 * 109.46604 * 59.99751 * 1 2 3 27 27 H 1.08999 * 109.46736 * 299.99576 * 4 2 1 28 28 H 1.08998 * 109.47184 * 59.99861 * 4 2 1 29 29 H 1.08994 * 109.47532 * 59.99524 * 5 4 2 30 30 H 1.09000 * 109.46871 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47081 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47308 * 300.00059 * 6 5 4 33 33 H 1.08999 * 109.47125 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46991 * 59.99688 * 7 6 5 35 35 H 1.08999 * 109.47514 * 179.97438 * 9 8 2 36 36 H 1.09000 * 109.47473 * 299.99770 * 9 8 2 37 37 H 1.09009 * 109.47049 * 59.99848 * 9 8 2 38 38 H 1.00894 * 111.00392 * 56.04616 * 10 8 2 39 39 H 1.09000 * 109.46801 * 59.99734 * 11 10 8 40 40 H 1.08994 * 109.47121 * 299.99926 * 11 10 8 41 41 H 1.09002 * 109.47712 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.47426 * 300.00241 * 13 12 11 43 43 H 1.09002 * 109.47145 * 59.99821 * 13 12 11 44 44 H 1.09004 * 109.46786 * 300.00139 * 14 12 11 45 45 H 1.08995 * 109.46766 * 60.00302 * 14 12 11 46 46 H 1.09002 * 109.47164 * 180.02562 * 14 12 11 47 47 H 1.09001 * 109.47671 * 60.00109 * 15 12 11 48 48 H 1.08998 * 109.47454 * 300.00107 * 15 12 11 49 49 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5695 -0.7223 -1.2496 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -2.1637 -1.2493 10 7 1.5504 -0.0287 -2.4486 11 6 2.0219 -0.6945 -3.6704 12 6 1.4923 0.0535 -4.8955 13 6 2.0015 1.4960 -4.8719 14 6 -0.0376 0.0522 -4.8720 15 6 1.9828 -0.6403 -6.1679 16 6 1.4607 0.0960 -7.3748 17 1 0.8407 0.9710 -7.2469 18 6 1.7788 -0.3443 -8.6419 19 7 2.5383 -1.4067 -8.7975 20 14 1.1323 0.5687 -10.1378 21 1 1.6216 1.9706 -10.1118 22 1 1.6143 -0.1004 -11.3728 23 1 -0.3526 0.5622 -10.1180 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2492 29 1 3.9338 0.3055 1.2487 30 1 3.9333 -1.2362 2.1386 31 1 5.1694 -1.4444 -0.0004 32 1 3.7157 -2.4710 -0.0002 33 1 3.9321 -1.2366 -2.1396 34 1 3.9332 0.3052 -1.2498 35 1 1.8929 -2.6774 -2.1395 36 1 1.8933 -2.6777 -0.3594 37 1 0.4399 -2.1637 -1.2493 38 1 1.8198 0.9436 -2.4401 39 1 1.6587 -1.7220 -3.6874 40 1 3.1117 -0.6939 -3.6869 41 1 1.6246 2.0288 -5.7450 42 1 1.6517 1.9900 -3.9655 43 1 3.0913 1.4970 -4.8887 44 1 -0.4003 -0.9756 -4.8888 45 1 -0.3873 0.5462 -3.9655 46 1 -0.4149 0.5847 -5.7451 47 1 1.6197 -1.6679 -6.1846 48 1 3.0727 -0.6398 -6.1849 49 1 2.7625 -1.7163 -9.6890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308751393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:58 Heat of formation + Delta-G solvation = -40.259491 kcal Electronic energy + Delta-G solvation = -22223.193996 eV Core-core repulsion = 19376.410723 eV Total energy + Delta-G solvation = -2846.783273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07488 -37.07458 -33.98432 -32.65143 -32.12405 -29.42910 -27.60510 -26.84214 -26.29294 -25.81115 -24.91556 -22.78616 -21.32273 -20.98907 -18.24895 -17.84656 -16.21980 -16.00332 -15.15396 -14.97112 -14.51834 -14.17203 -13.86400 -13.72764 -13.35350 -13.05690 -12.70033 -12.57770 -12.43342 -11.98746 -11.94433 -11.86489 -11.83665 -11.71986 -11.21628 -11.09795 -10.91879 -10.80990 -10.76133 -10.63726 -10.45778 -10.32157 -10.19804 -10.15724 -10.05618 -9.93462 -9.59960 -8.94879 -8.78431 -8.28412 -7.88395 -5.93140 -3.93111 3.36520 3.41043 3.43354 4.38025 4.52522 4.63743 4.67468 4.97510 5.04787 5.15703 5.32736 5.34046 5.42569 5.44940 5.49286 5.62560 5.69050 5.78194 5.83709 5.84269 5.90395 5.93775 5.99286 6.02611 6.04231 6.09341 6.13819 6.21955 6.26858 6.31561 6.41339 6.48249 6.48984 6.57814 6.63452 6.72409 6.86138 6.88221 7.26528 7.31482 7.32666 7.53912 7.73565 7.81424 7.91133 8.07487 8.52311 9.12189 9.69478 11.18503 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.004150 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.185222 B = 6745.088001 C = 7048.530625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.149 4.149 8 C 0.120 3.880 9 C -0.143 4.143 10 N -0.673 5.673 11 C 0.067 3.933 12 C -0.058 4.058 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.035 3.965 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.335 0.665 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 1.315 19.827 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.188 4.188 8 C 0.029 3.971 9 C -0.200 4.200 10 N -0.304 5.304 11 C -0.062 4.062 12 C -0.058 4.058 13 C -0.185 4.185 14 C -0.172 4.172 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.203 1.203 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.598 0.884 19.675 19.704 hybrid contribution 0.820 0.676 -1.025 1.476 sum 0.222 1.559 18.649 18.716 Atomic orbital electron populations 1.21766 0.94635 1.01829 1.01441 1.21064 0.96272 0.98660 0.93431 0.91884 1.21650 0.95233 1.00993 0.97409 1.21536 0.95948 1.00530 0.97625 1.21527 0.99778 0.99675 0.94502 1.22302 0.97611 1.00628 0.98307 1.20826 0.91116 0.94689 0.90507 1.22015 1.01820 0.94886 1.01320 1.60769 1.62841 1.05878 1.00893 1.22165 0.96551 0.98500 0.88960 1.20617 0.95686 0.94751 0.94760 1.21758 0.99634 0.96977 1.00165 1.21587 0.95142 1.00483 0.99981 1.19107 0.95874 0.95294 0.90013 1.21213 1.30591 1.12016 0.90652 0.92394 1.25008 0.95415 0.95158 0.98978 1.69959 1.37365 1.24114 1.22377 0.86738 0.79288 0.79942 0.82503 1.20392 1.21463 1.20317 0.92785 0.94030 0.91180 0.92314 0.91645 0.92318 0.92432 0.92554 0.91713 0.91399 0.92430 0.92555 0.92470 0.91763 0.84545 0.91413 0.95720 0.91890 0.94827 0.94250 0.94304 0.93884 0.92899 0.96806 0.97035 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.68 37.16 0.32 -1.17 16 2 C -0.08 -0.80 2.14 -90.62 -0.19 -0.99 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.06 4.93 -26.73 -0.13 -1.19 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.18 5.65 -26.73 -0.15 -1.33 16 7 C -0.15 -1.78 4.48 -26.76 -0.12 -1.90 16 8 C 0.12 1.44 0.40 -131.63 -0.05 1.39 16 9 C -0.14 -1.74 7.19 37.15 0.27 -1.48 16 10 N -0.67 -9.50 4.54 -99.99 -0.45 -9.95 16 11 C 0.07 1.14 3.86 -3.82 -0.01 1.13 16 12 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 13 C -0.13 -2.40 7.89 37.15 0.29 -2.10 16 14 C -0.11 -2.23 8.06 37.16 0.30 -1.93 16 15 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 16 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 17 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.85 7.60 -51.93 -0.39 0.45 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 33 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.76 6.40 -51.93 -0.33 0.43 16 36 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 37 H 0.06 0.81 6.43 -51.92 -0.33 0.47 16 38 H 0.34 4.69 6.76 -39.29 -0.27 4.42 16 39 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 40 H 0.02 0.44 6.30 -51.93 -0.33 0.11 16 41 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 42 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 46 H 0.05 1.11 6.61 -51.93 -0.34 0.76 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -28.31 346.90 -8.79 -37.10 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -9.07 Total: 1.25 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -0.21 Total: -24.04 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.28 Total: -36.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.31 -8.79 -37.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.156 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds