Wall clock time and date at job start Mon Mar 30 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47532 * 2 1 4 4 C 1.53006 * 109.47152 * 120.00476 * 2 1 3 5 5 C 1.52999 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46898 * 299.99733 * 5 4 2 7 7 C 1.52997 * 109.47390 * 60.00176 * 6 5 4 8 8 C 1.53000 * 109.47075 * 239.99879 * 2 1 3 9 9 C 1.52994 * 109.47485 * 300.00351 * 8 2 1 10 10 N 1.46901 * 109.46851 * 60.00490 * 8 2 1 11 11 C 1.46907 * 111.00060 * 179.97438 * 10 8 2 12 12 C 1.52996 * 109.47007 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.47460 * 59.99928 * 12 11 10 14 14 C 1.53008 * 109.47234 * 299.99988 * 12 11 10 15 15 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 12 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47050 * 59.99579 * 20 18 16 22 22 H 1.48496 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46492 * 299.99554 * 20 18 16 24 24 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46954 * 300.00082 * 1 2 3 26 26 H 1.09000 * 109.46604 * 59.99751 * 1 2 3 27 27 H 1.08999 * 109.46736 * 299.99576 * 4 2 1 28 28 H 1.08998 * 109.47184 * 59.99861 * 4 2 1 29 29 H 1.08994 * 109.47532 * 59.99524 * 5 4 2 30 30 H 1.09000 * 109.46871 * 180.02562 * 5 4 2 31 31 H 1.09001 * 109.47081 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47308 * 300.00059 * 6 5 4 33 33 H 1.08999 * 109.47125 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46991 * 59.99688 * 7 6 5 35 35 H 1.08999 * 109.47514 * 179.97438 * 9 8 2 36 36 H 1.09000 * 109.47473 * 299.99770 * 9 8 2 37 37 H 1.09009 * 109.47049 * 59.99848 * 9 8 2 38 38 H 1.00894 * 111.00392 * 56.04616 * 10 8 2 39 39 H 1.09000 * 109.46801 * 59.99734 * 11 10 8 40 40 H 1.08994 * 109.47121 * 299.99926 * 11 10 8 41 41 H 1.09002 * 109.47712 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.47426 * 300.00241 * 13 12 11 43 43 H 1.09002 * 109.47145 * 59.99821 * 13 12 11 44 44 H 1.09004 * 109.46786 * 300.00139 * 14 12 11 45 45 H 1.08995 * 109.46766 * 60.00302 * 14 12 11 46 46 H 1.09002 * 109.47164 * 180.02562 * 14 12 11 47 47 H 1.09001 * 109.47671 * 60.00109 * 15 12 11 48 48 H 1.08998 * 109.47454 * 300.00107 * 15 12 11 49 49 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5695 -0.7223 -1.2496 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -2.1637 -1.2493 10 7 1.5504 -0.0287 -2.4486 11 6 2.0219 -0.6945 -3.6704 12 6 1.4923 0.0535 -4.8955 13 6 2.0015 1.4960 -4.8719 14 6 -0.0376 0.0522 -4.8720 15 6 1.9828 -0.6403 -6.1679 16 6 1.4607 0.0960 -7.3748 17 1 0.8407 0.9710 -7.2469 18 6 1.7788 -0.3443 -8.6419 19 7 2.5383 -1.4067 -8.7975 20 14 1.1323 0.5687 -10.1378 21 1 1.6216 1.9706 -10.1118 22 1 1.6143 -0.1004 -11.3728 23 1 -0.3526 0.5622 -10.1180 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2492 29 1 3.9338 0.3055 1.2487 30 1 3.9333 -1.2362 2.1386 31 1 5.1694 -1.4444 -0.0004 32 1 3.7157 -2.4710 -0.0002 33 1 3.9321 -1.2366 -2.1396 34 1 3.9332 0.3052 -1.2498 35 1 1.8929 -2.6774 -2.1395 36 1 1.8933 -2.6777 -0.3594 37 1 0.4399 -2.1637 -1.2493 38 1 1.8198 0.9436 -2.4401 39 1 1.6587 -1.7220 -3.6874 40 1 3.1117 -0.6939 -3.6869 41 1 1.6246 2.0288 -5.7450 42 1 1.6517 1.9900 -3.9655 43 1 3.0913 1.4970 -4.8887 44 1 -0.4003 -0.9756 -4.8888 45 1 -0.3873 0.5462 -3.9655 46 1 -0.4149 0.5847 -5.7451 47 1 1.6197 -1.6679 -6.1846 48 1 3.0727 -0.6398 -6.1849 49 1 2.7625 -1.7163 -9.6890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308751393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:58 Heat of formation + Delta-G solvation = -54.636003 kcal Electronic energy + Delta-G solvation = -22223.817408 eV Core-core repulsion = 19376.410723 eV Total energy + Delta-G solvation = -2847.406685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07121 -38.60701 -35.34962 -34.13516 -33.42005 -30.62868 -28.79502 -28.55125 -27.85060 -27.03496 -26.12963 -24.54764 -22.34689 -21.87872 -19.47180 -19.20084 -18.32422 -17.18076 -16.51954 -16.08733 -16.01460 -15.37546 -15.14171 -14.93231 -14.52696 -14.37167 -14.23004 -13.89567 -13.62805 -13.53217 -13.29626 -12.94409 -12.82403 -12.78182 -12.68177 -12.62445 -12.50169 -12.23637 -12.16424 -11.97800 -11.93337 -11.82001 -11.49917 -11.40940 -11.10963 -11.04856 -10.96655 -10.77566 -10.61072 -10.49855 -9.09365 -8.13636 -6.20911 1.40412 1.42860 1.50141 2.43800 3.20014 3.29107 3.75304 3.81888 4.07895 4.13999 4.23305 4.27047 4.34086 4.40331 4.46389 4.48940 4.61042 4.64763 4.76852 4.80111 4.82093 4.89990 4.96123 5.00168 5.02443 5.09375 5.13717 5.15812 5.17895 5.23026 5.23353 5.25944 5.31344 5.38757 5.44266 5.50871 5.53762 5.54920 5.59705 5.61834 5.68548 5.74731 5.89430 5.93555 6.24087 6.40032 6.64823 6.94145 7.46429 8.98558 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.004150 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.185222 B = 6745.088001 C = 7048.530625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.147 4.147 8 C 0.120 3.880 9 C -0.141 4.141 10 N -0.667 5.667 11 C 0.084 3.916 12 C -0.054 4.054 13 C -0.120 4.120 14 C -0.104 4.104 15 C 0.042 3.958 16 C -0.515 4.515 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.268 1.268 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.339 0.661 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.027 0.973 45 H 0.069 0.931 46 H 0.036 0.964 47 H -0.019 1.019 48 H -0.019 1.019 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 2.726 21.748 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.186 4.186 8 C 0.029 3.971 9 C -0.198 4.198 10 N -0.298 5.298 11 C -0.046 4.046 12 C -0.055 4.055 13 C -0.178 4.178 14 C -0.162 4.162 15 C 0.004 3.996 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.193 1.193 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.000 1.000 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.360 2.308 21.615 21.781 hybrid contribution 1.077 0.196 -1.584 1.926 sum -0.283 2.505 20.031 20.189 Atomic orbital electron populations 1.21729 0.94522 1.01684 1.01442 1.21037 0.96269 0.98641 0.93006 0.91722 1.21637 0.95275 1.01011 0.97033 1.21519 0.95792 1.00610 0.97353 1.21517 1.00062 0.99559 0.94156 1.22252 0.97426 1.00543 0.98426 1.20918 0.91278 0.94624 0.90286 1.22000 1.01578 0.95003 1.01198 1.60718 1.62719 1.06001 1.00378 1.21806 0.95726 0.97659 0.89369 1.20488 0.96221 0.95436 0.93332 1.21664 0.99236 0.95793 1.01062 1.21480 0.94337 0.99877 1.00461 1.18986 0.93768 0.94049 0.92781 1.21596 1.30156 1.12096 0.91455 0.91639 1.25922 0.95717 0.96019 1.02408 1.70109 1.38918 1.25887 1.23058 0.85635 0.78976 0.78867 0.78402 1.19263 1.21319 1.19308 0.93005 0.92550 0.92653 0.90837 0.91529 0.92157 0.90925 0.92184 0.91712 0.93755 0.92491 0.94600 0.90699 0.92043 0.84098 0.92681 0.96684 0.93595 0.91383 0.94788 0.95360 0.91249 0.94489 1.00048 1.00092 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.68 71.98 0.63 -1.95 16 2 C -0.07 -1.32 2.14 -10.79 -0.02 -1.34 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.70 4.93 30.60 0.15 -1.55 16 5 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 6 C -0.11 -2.13 5.65 30.59 0.17 -1.95 16 7 C -0.15 -3.40 4.48 30.58 0.14 -3.26 16 8 C 0.12 2.73 0.40 3.51 0.00 2.73 16 9 C -0.14 -3.32 7.19 71.98 0.52 -2.80 16 10 N -0.67 -18.14 4.54 -470.26 -2.13 -20.28 16 11 C 0.08 2.91 3.86 86.30 0.33 3.25 16 12 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.12 -4.42 7.89 71.98 0.57 -3.86 16 14 C -0.10 -4.03 8.06 71.98 0.58 -3.45 16 15 C 0.04 2.21 4.04 29.85 0.12 2.33 16 16 C -0.51 -28.97 7.65 25.60 0.20 -28.78 16 17 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 20 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H 0.05 1.00 6.43 -2.39 -0.02 0.98 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.21 7.60 -2.39 -0.02 1.19 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 33 H 0.04 1.22 6.40 -2.39 -0.02 1.21 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 0.98 6.40 -2.39 -0.02 0.97 16 36 H 0.07 1.48 4.81 -2.39 -0.01 1.47 16 37 H 0.06 1.48 6.43 -2.38 -0.02 1.46 16 38 H 0.34 8.83 6.76 -89.70 -0.61 8.22 16 39 H 0.05 2.06 6.30 -2.39 -0.02 2.05 16 40 H 0.02 0.55 6.30 -2.39 -0.02 0.54 16 41 H 0.04 1.84 6.62 -2.39 -0.02 1.82 16 42 H 0.07 2.02 6.57 -2.39 -0.02 2.01 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.10 16 45 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 46 H 0.04 1.52 6.61 -2.39 -0.02 1.51 16 47 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 48 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 49 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -62.19 346.90 4.47 -57.73 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.30 Total: 17.66 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 3.99 Total: -44.17 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.85 Total: -78.20 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.19 4.47 -57.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308751393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.091 kcal (2) G-P(sol) polarization free energy of solvation -62.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds