Wall clock time and date at job start Mon Mar 30 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 C 1.53004 * 109.47546 * 119.99766 * 2 1 3 5 5 H 1.09004 * 109.46694 * 294.71726 * 4 2 1 6 6 N 1.46907 * 109.46669 * 54.71029 * 4 2 1 7 7 C 1.46903 * 110.99930 * 59.71390 * 6 4 2 8 8 C 1.52991 * 109.47030 * 174.36225 * 7 6 4 9 9 C 1.53002 * 109.47287 * 300.00045 * 8 7 6 10 10 C 1.52994 * 109.47436 * 60.00057 * 8 7 6 11 11 C 1.53007 * 109.47117 * 179.97438 * 8 7 6 12 12 C 1.50698 * 109.46845 * 179.97438 * 11 8 7 13 13 H 1.07994 * 120.00493 * 0.02562 * 12 11 8 14 14 C 1.37886 * 119.99715 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99721 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00112 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47363 * 89.99965 * 16 14 12 18 18 H 1.48498 * 109.47433 * 210.00226 * 16 14 12 19 19 H 1.48506 * 109.47165 * 330.00059 * 16 14 12 20 20 C 1.52991 * 109.47569 * 174.71271 * 4 2 1 21 21 C 1.53781 * 113.61606 * 180.02562 * 20 4 2 22 22 C 1.53780 * 87.07951 * 220.02048 * 21 20 4 23 23 C 1.53775 * 87.17396 * 25.38778 * 22 21 20 24 24 H 1.08996 * 109.47532 * 293.75204 * 1 2 3 25 25 H 1.09000 * 109.47165 * 53.75194 * 1 2 3 26 26 H 1.09001 * 109.47293 * 173.75259 * 1 2 3 27 27 H 1.08998 * 109.47429 * 240.00174 * 2 1 3 28 28 H 1.08998 * 109.47901 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47189 * 299.99828 * 3 2 1 30 30 H 1.09002 * 109.47152 * 59.99886 * 3 2 1 31 31 H 1.00898 * 111.00289 * 295.76255 * 6 4 2 32 32 H 1.08997 * 109.46986 * 294.36639 * 7 6 4 33 33 H 1.09000 * 109.47214 * 54.35915 * 7 6 4 34 34 H 1.08992 * 109.47176 * 60.00039 * 9 8 7 35 35 H 1.08996 * 109.47442 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47164 * 300.00077 * 9 8 7 37 37 H 1.09005 * 109.47525 * 59.99639 * 10 8 7 38 38 H 1.09001 * 109.47660 * 179.97438 * 10 8 7 39 39 H 1.09001 * 109.47221 * 299.99822 * 10 8 7 40 40 H 1.08997 * 109.47220 * 299.99967 * 11 8 7 41 41 H 1.09004 * 109.46998 * 60.00128 * 11 8 7 42 42 H 0.97000 * 119.99438 * 180.02562 * 15 14 12 43 43 H 1.09007 * 112.84790 * 311.19643 * 20 4 2 44 44 H 1.09002 * 113.61816 * 105.46921 * 21 20 4 45 45 H 1.09005 * 113.61163 * 334.56517 * 21 20 4 46 46 H 1.08999 * 113.61839 * 139.98195 * 22 21 20 47 47 H 1.09002 * 113.61242 * 270.79588 * 22 21 20 48 48 H 1.09000 * 113.61421 * 89.16287 * 23 22 21 49 49 H 1.09004 * 113.61118 * 220.06182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7560 -0.1556 2.1367 6 7 1.4488 -2.0645 1.3148 7 6 1.8054 -2.8550 0.1291 8 6 1.2923 -4.2865 0.2973 9 6 1.9292 -4.9139 1.5390 10 6 -0.2289 -4.2674 0.4590 11 6 1.6631 -5.1097 -0.9380 12 6 1.1583 -6.5198 -0.7719 13 1 0.6259 -6.8008 0.1248 14 6 1.3753 -7.4512 -1.7652 15 7 2.0232 -7.1089 -2.8573 16 14 0.7490 -9.1989 -1.5597 17 1 -0.6269 -9.2996 -2.1095 18 1 1.6429 -10.1341 -2.2888 19 1 0.7329 -9.5527 -0.1175 20 6 3.5641 -0.8373 1.1846 21 6 4.1797 -1.5513 2.3996 22 6 5.3071 -0.5070 2.3429 23 6 4.3010 0.4301 1.6543 24 1 -0.3634 0.4139 0.9406 25 1 -0.3633 0.6076 -0.8288 26 1 -0.3634 -1.0216 -0.1118 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.4475 -2.0138 1.4278 32 1 1.3517 -2.4080 -0.7555 33 1 2.8892 -2.8686 0.0139 34 1 1.6647 -4.3274 2.4187 35 1 1.5641 -5.9339 1.6586 36 1 3.0131 -4.9275 1.4239 37 1 -0.6828 -3.8204 -0.4256 38 1 -0.5945 -5.2873 0.5784 39 1 -0.4935 -3.6809 1.3388 40 1 1.2090 -4.6626 -1.8222 41 1 2.7469 -5.1234 -1.0535 42 1 2.1755 -7.7641 -3.5563 43 1 3.9192 -1.2199 0.2276 44 1 4.5139 -2.5667 2.1864 45 1 3.5689 -1.4859 3.3001 46 1 5.6284 -0.1575 3.3241 47 1 6.1405 -0.7985 1.7037 48 1 3.7234 1.0382 2.3505 49 1 4.7330 1.0121 0.8401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324799916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:18 Heat of formation + Delta-G solvation = -14.548948 kcal Electronic energy + Delta-G solvation = -22175.571275 eV Core-core repulsion = 19329.902894 eV Total energy + Delta-G solvation = -2845.668380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82185 -37.28458 -35.70133 -32.82147 -31.66841 -27.93739 -27.12887 -26.42339 -26.26802 -25.26109 -25.04119 -22.98468 -22.19176 -19.47353 -19.24504 -17.71111 -16.21039 -15.80007 -15.63529 -14.95801 -14.77514 -14.33771 -14.00166 -13.38896 -13.32251 -12.95692 -12.67954 -12.48274 -12.26603 -12.11111 -12.00737 -11.94960 -11.82812 -11.52987 -11.30615 -11.01169 -10.88515 -10.77090 -10.70248 -10.59152 -10.46079 -10.38713 -10.14011 -10.10488 -10.03066 -9.80094 -9.57423 -8.93990 -8.77526 -8.28157 -7.87871 -5.92887 -3.92547 3.35206 3.41814 3.44942 4.41186 4.52830 4.65577 4.74363 4.92170 4.98685 5.05559 5.17088 5.19985 5.42994 5.52976 5.56713 5.63026 5.71295 5.72868 5.80034 5.82507 5.85387 5.89807 5.92757 5.97570 6.02343 6.08180 6.11866 6.22608 6.30810 6.32081 6.39264 6.43448 6.49921 6.61272 6.67658 6.74984 6.88061 6.89930 7.28092 7.32979 7.33805 7.53415 7.74499 7.81535 7.92220 8.08123 8.53206 9.13091 9.70016 11.18837 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023984 B = 0.004644 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.156718 B = 6027.689191 C = 6482.334677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.147 4.147 4 C 0.104 3.896 5 H 0.073 0.927 6 N -0.676 5.676 7 C 0.069 3.931 8 C -0.056 4.056 9 C -0.114 4.114 10 C -0.128 4.128 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.058 0.942 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.150 4.150 23 C -0.133 4.133 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.336 0.664 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.258 0.742 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 16.386 8.773 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.205 4.205 4 C -0.006 4.006 5 H 0.092 0.908 6 N -0.307 5.307 7 C -0.060 4.060 8 C -0.057 4.057 9 C -0.171 4.171 10 C -0.185 4.185 11 C -0.004 4.004 12 C -0.543 4.543 13 H 0.077 0.923 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.715 3.285 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.117 4.117 21 C -0.153 4.153 22 C -0.187 4.187 23 C -0.171 4.171 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.032 0.968 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.860 16.034 9.011 18.486 hybrid contribution -0.898 -0.600 -0.916 1.416 sum 0.961 15.434 8.095 17.454 Atomic orbital electron populations 1.21858 0.95569 1.01934 1.01395 1.21851 0.95775 0.96884 1.00639 1.21929 1.01708 0.95858 1.00981 1.21617 0.93707 0.89495 0.95787 0.90849 1.60700 1.15958 1.12440 1.41553 1.22110 1.00248 0.93929 0.89715 1.20595 0.94289 0.92548 0.98239 1.21571 0.99234 0.99850 0.96430 1.21755 0.96409 1.01682 0.98655 1.19119 0.96426 0.93895 0.90937 1.21251 1.35091 0.95052 1.02901 0.92342 1.25015 0.95560 0.98548 0.95495 1.69973 1.41826 1.34437 1.07605 0.86682 0.78615 0.85110 0.78118 1.20865 1.21407 1.19918 1.22553 0.93713 0.96440 0.99018 1.22673 0.96236 0.98078 0.98303 1.22898 0.97267 0.98185 1.00392 1.23032 0.97965 0.96276 0.99813 0.92911 0.92881 0.92398 0.90960 0.91839 0.93452 0.93136 0.84395 0.95854 0.91561 0.93816 0.92995 0.94407 0.94319 0.91973 0.94784 0.97079 0.96841 0.93235 0.89615 0.91561 0.90170 0.92066 0.90657 0.90431 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.48 37.15 0.32 -1.36 16 2 C -0.13 -1.50 1.95 -90.62 -0.18 -1.68 16 3 C -0.15 -1.44 8.56 37.16 0.32 -1.12 16 4 C 0.10 1.24 2.01 -67.71 -0.14 1.10 16 5 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 6 N -0.68 -9.42 5.13 -106.73 -0.55 -9.96 16 7 C 0.07 1.16 3.71 -3.83 -0.01 1.15 16 8 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 9 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 10 C -0.13 -2.39 7.88 37.15 0.29 -2.10 16 11 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 12 C -0.50 -13.91 7.65 -34.44 -0.26 -14.17 16 13 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 14 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 15 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.10 -1.16 2.10 -89.72 -0.19 -1.35 16 21 C -0.12 -1.39 7.40 -25.92 -0.19 -1.58 16 22 C -0.15 -1.54 8.08 -25.92 -0.21 -1.75 16 23 C -0.13 -1.31 5.66 -25.83 -0.15 -1.45 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.72 6.59 -51.93 -0.34 0.37 16 27 H 0.07 0.97 6.83 -51.93 -0.35 0.61 16 28 H 0.06 0.60 5.10 -51.93 -0.26 0.34 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.34 4.59 5.48 -39.29 -0.22 4.37 16 32 H 0.02 0.41 6.35 -51.93 -0.33 0.08 16 33 H 0.07 1.18 6.33 -51.93 -0.33 0.86 16 34 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 35 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.54 6.71 -51.93 -0.35 0.19 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 1.15 7.09 -51.93 -0.37 0.78 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16 49 H 0.06 0.59 7.11 -51.93 -0.37 0.22 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -28.35 356.91 -9.19 -37.54 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -9.33 Total: 1.88 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -0.40 Total: -25.24 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.19 Total: -36.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.35 -9.19 -37.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324799916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.993 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds