Wall clock time and date at job start Mon Mar 30 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 C 1.53004 * 109.47546 * 119.99766 * 2 1 3 5 5 H 1.09004 * 109.46694 * 294.71726 * 4 2 1 6 6 N 1.46907 * 109.46669 * 54.71029 * 4 2 1 7 7 C 1.46903 * 110.99930 * 59.71390 * 6 4 2 8 8 C 1.52991 * 109.47030 * 174.36225 * 7 6 4 9 9 C 1.53002 * 109.47287 * 300.00045 * 8 7 6 10 10 C 1.52994 * 109.47436 * 60.00057 * 8 7 6 11 11 C 1.53007 * 109.47117 * 179.97438 * 8 7 6 12 12 C 1.50698 * 109.46845 * 179.97438 * 11 8 7 13 13 H 1.07994 * 120.00493 * 0.02562 * 12 11 8 14 14 C 1.37886 * 119.99715 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99721 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00112 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47363 * 89.99965 * 16 14 12 18 18 H 1.48498 * 109.47433 * 210.00226 * 16 14 12 19 19 H 1.48506 * 109.47165 * 330.00059 * 16 14 12 20 20 C 1.52991 * 109.47569 * 174.71271 * 4 2 1 21 21 C 1.53781 * 113.61606 * 180.02562 * 20 4 2 22 22 C 1.53780 * 87.07951 * 220.02048 * 21 20 4 23 23 C 1.53775 * 87.17396 * 25.38778 * 22 21 20 24 24 H 1.08996 * 109.47532 * 293.75204 * 1 2 3 25 25 H 1.09000 * 109.47165 * 53.75194 * 1 2 3 26 26 H 1.09001 * 109.47293 * 173.75259 * 1 2 3 27 27 H 1.08998 * 109.47429 * 240.00174 * 2 1 3 28 28 H 1.08998 * 109.47901 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47189 * 299.99828 * 3 2 1 30 30 H 1.09002 * 109.47152 * 59.99886 * 3 2 1 31 31 H 1.00898 * 111.00289 * 295.76255 * 6 4 2 32 32 H 1.08997 * 109.46986 * 294.36639 * 7 6 4 33 33 H 1.09000 * 109.47214 * 54.35915 * 7 6 4 34 34 H 1.08992 * 109.47176 * 60.00039 * 9 8 7 35 35 H 1.08996 * 109.47442 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47164 * 300.00077 * 9 8 7 37 37 H 1.09005 * 109.47525 * 59.99639 * 10 8 7 38 38 H 1.09001 * 109.47660 * 179.97438 * 10 8 7 39 39 H 1.09001 * 109.47221 * 299.99822 * 10 8 7 40 40 H 1.08997 * 109.47220 * 299.99967 * 11 8 7 41 41 H 1.09004 * 109.46998 * 60.00128 * 11 8 7 42 42 H 0.97000 * 119.99438 * 180.02562 * 15 14 12 43 43 H 1.09007 * 112.84790 * 311.19643 * 20 4 2 44 44 H 1.09002 * 113.61816 * 105.46921 * 21 20 4 45 45 H 1.09005 * 113.61163 * 334.56517 * 21 20 4 46 46 H 1.08999 * 113.61839 * 139.98195 * 22 21 20 47 47 H 1.09002 * 113.61242 * 270.79588 * 22 21 20 48 48 H 1.09000 * 113.61421 * 89.16287 * 23 22 21 49 49 H 1.09004 * 113.61118 * 220.06182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7560 -0.1556 2.1367 6 7 1.4488 -2.0645 1.3148 7 6 1.8054 -2.8550 0.1291 8 6 1.2923 -4.2865 0.2973 9 6 1.9292 -4.9139 1.5390 10 6 -0.2289 -4.2674 0.4590 11 6 1.6631 -5.1097 -0.9380 12 6 1.1583 -6.5198 -0.7719 13 1 0.6259 -6.8008 0.1248 14 6 1.3753 -7.4512 -1.7652 15 7 2.0232 -7.1089 -2.8573 16 14 0.7490 -9.1989 -1.5597 17 1 -0.6269 -9.2996 -2.1095 18 1 1.6429 -10.1341 -2.2888 19 1 0.7329 -9.5527 -0.1175 20 6 3.5641 -0.8373 1.1846 21 6 4.1797 -1.5513 2.3996 22 6 5.3071 -0.5070 2.3429 23 6 4.3010 0.4301 1.6543 24 1 -0.3634 0.4139 0.9406 25 1 -0.3633 0.6076 -0.8288 26 1 -0.3634 -1.0216 -0.1118 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.4475 -2.0138 1.4278 32 1 1.3517 -2.4080 -0.7555 33 1 2.8892 -2.8686 0.0139 34 1 1.6647 -4.3274 2.4187 35 1 1.5641 -5.9339 1.6586 36 1 3.0131 -4.9275 1.4239 37 1 -0.6828 -3.8204 -0.4256 38 1 -0.5945 -5.2873 0.5784 39 1 -0.4935 -3.6809 1.3388 40 1 1.2090 -4.6626 -1.8222 41 1 2.7469 -5.1234 -1.0535 42 1 2.1755 -7.7641 -3.5563 43 1 3.9192 -1.2199 0.2276 44 1 4.5139 -2.5667 2.1864 45 1 3.5689 -1.4859 3.3001 46 1 5.6284 -0.1575 3.3241 47 1 6.1405 -0.7985 1.7037 48 1 3.7234 1.0382 2.3505 49 1 4.7330 1.0121 0.8401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324799916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:17 Heat of formation + Delta-G solvation = -28.781891 kcal Electronic energy + Delta-G solvation = -22176.188461 eV Core-core repulsion = 19329.902894 eV Total energy + Delta-G solvation = -2846.285567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84525 -38.68151 -36.88284 -34.66966 -33.13169 -29.25173 -28.61772 -27.85484 -27.67484 -26.46268 -26.10685 -24.64125 -23.36999 -20.62080 -20.17418 -19.20954 -18.32593 -17.05395 -16.64957 -16.45653 -15.86483 -15.86141 -15.26783 -14.85977 -14.55799 -14.33907 -14.12186 -13.86576 -13.60610 -13.35988 -13.15232 -12.94671 -12.87093 -12.78013 -12.70587 -12.52000 -12.42952 -12.24287 -12.21018 -12.12980 -11.89736 -11.73108 -11.53461 -11.35341 -11.22053 -11.00284 -10.82722 -10.70883 -10.66195 -10.50518 -9.07538 -8.14028 -6.21034 1.39977 1.40729 1.51503 2.43525 3.19747 3.34514 3.74014 3.85359 4.00663 4.07052 4.13892 4.21677 4.25037 4.29407 4.33369 4.44801 4.63439 4.67587 4.76954 4.82345 4.86094 4.91208 4.92381 4.98090 5.00776 5.03102 5.09025 5.11615 5.11943 5.16944 5.21237 5.24988 5.25914 5.35078 5.44500 5.47690 5.52589 5.55485 5.57692 5.61021 5.70370 5.75810 5.90524 5.94060 6.22076 6.39993 6.67526 6.94348 7.46282 8.98447 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023984 B = 0.004644 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.156718 B = 6027.689191 C = 6482.334677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.142 4.142 4 C 0.108 3.892 5 H 0.093 0.907 6 N -0.671 5.671 7 C 0.089 3.911 8 C -0.053 4.053 9 C -0.102 4.102 10 C -0.120 4.120 11 C 0.041 3.959 12 C -0.512 4.512 13 H 0.065 0.935 14 C -0.005 4.005 15 N -0.939 5.939 16 Si 0.956 3.044 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.013 0.987 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.025 0.975 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.068 0.932 40 H -0.020 1.020 41 H -0.020 1.020 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 17.724 10.889 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.200 4.200 4 C -0.002 4.002 5 H 0.111 0.889 6 N -0.302 5.302 7 C -0.041 4.041 8 C -0.053 4.053 9 C -0.159 4.159 10 C -0.177 4.177 11 C 0.003 3.997 12 C -0.550 4.550 13 H 0.083 0.917 14 C -0.201 4.201 15 N -0.581 5.581 16 Si 0.781 3.219 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.183 4.183 23 C -0.157 4.157 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.087 0.913 40 H -0.001 1.001 41 H -0.002 1.002 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.961 17.384 11.144 20.671 hybrid contribution -0.592 -0.985 -1.591 1.963 sum 0.369 16.400 9.552 18.982 Atomic orbital electron populations 1.21839 0.95086 1.01130 1.02475 1.21788 0.96136 0.97873 0.99115 1.21887 1.01852 0.94418 1.01842 1.21688 0.93488 0.88277 0.96724 0.88917 1.60631 1.16437 1.13724 1.39401 1.21707 0.99016 0.92622 0.90742 1.20470 0.95639 0.93479 0.95760 1.21455 0.98317 0.99174 0.97004 1.21659 0.94844 1.01163 1.00034 1.19001 0.93842 0.94336 0.92502 1.21619 1.34531 0.95961 1.02937 0.91652 1.25930 0.95848 1.03166 0.95197 1.70120 1.43360 1.35971 1.08600 0.85579 0.78106 0.79605 0.78585 1.20019 1.21245 1.18681 1.22533 0.93930 0.98015 0.97854 1.22677 0.97330 0.97238 0.98423 1.22871 0.96751 0.97455 1.01197 1.22980 0.97242 0.95389 1.00049 0.91207 0.92542 0.94003 0.93712 0.91610 0.93285 0.91577 0.83766 0.96899 0.93026 0.91226 0.94674 0.95545 0.94772 0.93725 0.91337 1.00134 1.00185 0.93211 0.92042 0.94029 0.89701 0.90598 0.91091 0.88775 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.48 71.98 0.61 -2.42 16 2 C -0.13 -2.79 1.95 -10.80 -0.02 -2.81 16 3 C -0.14 -2.44 8.56 71.98 0.62 -1.82 16 4 C 0.11 2.37 2.01 44.91 0.09 2.46 16 5 H 0.09 1.77 7.95 -2.39 -0.02 1.75 16 6 N -0.67 -17.82 5.13 -491.57 -2.52 -20.34 16 7 C 0.09 3.06 3.71 86.30 0.32 3.38 16 8 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 9 C -0.10 -3.98 8.06 71.98 0.58 -3.39 16 10 C -0.12 -4.40 7.88 71.98 0.57 -3.84 16 11 C 0.04 2.17 4.04 29.85 0.12 2.29 16 12 C -0.51 -28.92 7.65 25.60 0.20 -28.72 16 13 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 14 C 0.00 -0.29 5.46 84.66 0.46 0.18 16 15 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 16 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 C -0.10 -2.38 2.10 -10.21 -0.02 -2.40 16 21 C -0.12 -2.75 7.40 31.12 0.23 -2.52 16 22 C -0.15 -2.73 8.08 31.12 0.25 -2.48 16 23 C -0.12 -2.04 5.66 31.18 0.18 -1.87 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.98 6.59 -2.39 -0.02 0.97 16 27 H 0.04 1.22 6.83 -2.39 -0.02 1.20 16 28 H 0.07 1.10 5.10 -2.39 -0.01 1.09 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.34 8.53 5.48 -89.70 -0.49 8.04 16 32 H 0.01 0.47 6.35 -2.39 -0.02 0.46 16 33 H 0.05 1.94 6.33 -2.39 -0.02 1.92 16 34 H 0.07 2.33 7.60 -2.39 -0.02 2.31 16 35 H 0.03 1.46 6.62 -2.39 -0.02 1.44 16 36 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.04 1.79 6.62 -2.39 -0.02 1.77 16 39 H 0.07 2.04 6.71 -2.39 -0.02 2.02 16 40 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 41 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.06 1.70 7.09 -2.38 -0.02 1.69 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.88 8.10 -2.38 -0.02 1.86 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.35 7.97 -2.39 -0.02 1.33 16 49 H 0.07 1.13 7.11 -2.38 -0.02 1.12 16 Total: -1.00 -62.89 356.91 4.33 -58.55 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.40 Total: 18.93 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 4.15 Total: -46.14 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.24 Total: -78.50 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -62.89 4.33 -58.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324799916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.771 kcal (2) G-P(sol) polarization free energy of solvation -62.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds