Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 C 1.53004 * 109.46573 * 240.00151 * 2 1 3 5 5 C 1.52996 * 109.47403 * 120.00616 * 2 1 3 6 6 C 1.53784 * 113.61539 * 63.71087 * 5 2 1 7 7 C 1.53783 * 87.07744 * 139.98268 * 6 5 2 8 8 N 1.46900 * 113.61351 * 89.12233 * 7 6 5 9 9 C 1.46896 * 111.00428 * 154.99670 * 8 7 6 10 10 C 1.53001 * 109.47613 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47092 * 300.00124 * 10 9 8 12 12 C 1.53003 * 109.46832 * 59.99992 * 10 9 8 13 13 C 1.52995 * 109.47204 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.46817 * 180.02562 * 13 10 9 15 15 H 1.07996 * 120.00059 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99795 * 180.02562 * 14 13 10 17 17 N 1.31510 * 120.00003 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47038 * 119.99699 * 18 16 14 21 21 H 1.48496 * 109.46728 * 239.99817 * 18 16 14 22 22 C 1.53771 * 87.08464 * 334.56820 * 7 6 5 23 23 H 1.09009 * 109.46817 * 299.99839 * 1 2 3 24 24 H 1.09000 * 109.47300 * 59.99323 * 1 2 3 25 25 H 1.09000 * 109.47561 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46879 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47520 * 300.00543 * 3 2 1 28 28 H 1.08998 * 109.46921 * 60.00788 * 3 2 1 29 29 H 1.08998 * 109.47552 * 293.49440 * 4 2 1 30 30 H 1.08999 * 109.47033 * 53.49309 * 4 2 1 31 31 H 1.08997 * 109.46803 * 173.49184 * 4 2 1 32 32 H 1.08998 * 112.90672 * 292.46740 * 5 2 1 33 33 H 1.09001 * 113.61542 * 25.43728 * 6 5 2 34 34 H 1.08998 * 113.69123 * 254.54271 * 6 5 2 35 35 H 1.09005 * 113.61207 * 219.93212 * 7 6 5 36 36 H 1.00899 * 111.00038 * 278.95046 * 8 7 6 37 37 H 1.09004 * 109.47314 * 299.99866 * 9 8 7 38 38 H 1.09004 * 109.47103 * 59.99576 * 9 8 7 39 39 H 1.09003 * 109.46947 * 59.99590 * 11 10 9 40 40 H 1.08993 * 109.47036 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47144 * 299.99848 * 11 10 9 42 42 H 1.08995 * 109.46815 * 59.99870 * 12 10 9 43 43 H 1.09001 * 109.46996 * 179.97438 * 12 10 9 44 44 H 1.09003 * 109.47127 * 300.00361 * 12 10 9 45 45 H 1.08994 * 109.47458 * 300.00124 * 13 10 9 46 46 H 1.08995 * 109.47104 * 60.00108 * 13 10 9 47 47 H 0.97006 * 120.00186 * 180.02562 * 17 16 14 48 48 H 1.09005 * 113.61538 * 139.97881 * 22 7 6 49 49 H 1.08999 * 113.61870 * 270.88766 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2491 6 6 1.6571 -2.2098 1.3005 7 6 3.0674 -2.4726 1.8544 8 7 3.1491 -2.3908 3.3188 9 6 4.2717 -3.1892 3.8290 10 6 4.3246 -3.0789 5.3541 11 6 4.5174 -1.6145 5.7531 12 6 3.0153 -3.6015 5.9489 13 6 5.4942 -3.9100 5.8852 14 6 5.5458 -3.8018 7.3875 15 1 4.8176 -3.2001 7.9109 16 6 6.5236 -4.4702 8.0936 17 7 7.4107 -5.2024 7.4561 18 14 6.5881 -4.3355 9.9556 19 1 5.4871 -3.4575 10.4268 20 1 6.4362 -5.6856 10.5551 21 1 7.8925 -3.7560 10.3650 22 6 3.5031 -1.1825 1.1401 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.7747 -1.7770 -1.1931 30 1 1.5845 -0.2790 -2.1354 31 1 3.1236 -0.6215 -1.3095 32 1 1.8198 -0.1819 2.1702 33 1 1.4846 -2.6505 0.3185 34 1 0.8606 -2.4329 2.0103 35 1 3.5328 -3.3734 1.4542 36 1 3.2194 -1.4317 3.6241 37 1 4.1346 -4.2325 3.5443 38 1 5.2045 -2.8167 3.4055 39 1 3.6844 -1.0221 5.3746 40 1 4.5546 -1.5359 6.8396 41 1 5.4501 -1.2423 5.3294 42 1 2.8780 -4.6447 5.6645 43 1 3.0532 -3.5233 7.0354 44 1 2.1823 -3.0091 5.5703 45 1 5.3573 -4.9533 5.6010 46 1 6.4267 -3.5373 5.4615 47 1 8.0983 -5.6729 7.9529 48 1 4.1969 -0.5747 1.7209 49 1 3.8352 -1.3421 0.1142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339471332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = -15.223546 kcal Electronic energy + Delta-G solvation = -21379.560595 eV Core-core repulsion = 18533.862962 eV Total energy + Delta-G solvation = -2845.697633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22050 -37.38451 -35.40255 -32.69052 -31.21129 -27.72286 -27.52094 -26.93387 -26.30565 -25.41924 -25.21771 -24.14209 -22.28338 -19.98821 -18.03857 -17.83238 -16.26351 -15.90352 -15.43358 -14.70479 -14.63691 -14.33757 -14.13898 -13.67749 -13.52422 -12.95132 -12.89215 -12.70078 -12.40261 -12.31410 -12.00320 -11.98929 -11.72241 -11.67264 -11.55234 -11.17752 -11.03757 -10.94456 -10.84343 -10.73543 -10.48045 -10.44818 -10.21983 -10.14060 -10.06020 -9.79420 -9.65458 -8.98154 -8.78270 -8.30147 -7.98535 -5.94474 -3.94360 3.33590 3.41387 3.45020 4.34532 4.48647 4.51568 4.56557 4.65117 4.86974 4.99251 5.13826 5.22072 5.36897 5.41453 5.46525 5.48499 5.56047 5.64955 5.71612 5.73070 5.77281 5.81362 5.84089 5.86867 5.92030 6.01391 6.04722 6.08601 6.14308 6.24801 6.28182 6.34231 6.35932 6.49472 6.54817 6.69501 6.83196 6.85983 7.23925 7.28831 7.30028 7.49076 7.72074 7.76822 7.88817 8.06219 8.50859 9.11360 9.68377 11.17267 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043732 B = 0.003276 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.109058 B = 8545.511652 C = 8622.492908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.095 4.095 6 C -0.129 4.129 7 C 0.067 3.933 8 N -0.667 5.667 9 C 0.071 3.929 10 C -0.059 4.059 11 C -0.128 4.128 12 C -0.116 4.116 13 C 0.034 3.966 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.170 4.170 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.339 0.661 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.258 0.742 48 H 0.061 0.939 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 10.127 -16.058 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.113 4.113 6 C -0.167 4.167 7 C -0.044 4.044 8 N -0.298 5.298 9 C -0.057 4.057 10 C -0.059 4.059 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.209 4.209 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.875 9.517 -15.907 22.014 hybrid contribution 1.029 0.553 0.764 1.395 sum -10.846 10.070 -15.143 21.174 Atomic orbital electron populations 1.21825 0.94732 1.01791 1.01260 1.20435 0.95337 0.95161 0.95052 1.21839 1.01016 0.95529 1.01319 1.22014 1.00994 1.00556 0.96663 1.22530 0.95827 0.95639 0.97334 1.23151 0.97801 0.95266 1.00525 1.22557 0.96516 0.96883 0.88483 1.60433 1.46145 1.16328 1.06857 1.22135 0.90069 0.97181 0.96337 1.20637 0.98064 0.95993 0.91253 1.21765 0.98694 0.95737 1.02383 1.21593 0.95758 0.99420 1.00512 1.19121 0.91301 0.94295 0.95669 1.21286 1.12631 1.28485 0.91973 0.92241 1.25022 0.95893 0.95625 0.98112 1.69978 1.16885 1.31720 1.35201 0.86612 0.77783 0.77738 0.86335 1.19770 1.21158 1.21216 1.23823 0.96528 0.98790 1.01723 0.92800 0.93162 0.92515 0.92730 0.93098 0.92803 0.92226 0.93150 0.92419 0.89511 0.90170 0.90941 0.90518 0.84081 0.91619 0.95906 0.94896 0.91740 0.94143 0.94194 0.92748 0.93918 0.96696 0.96951 0.93244 0.92009 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.31 37.16 0.31 -0.81 16 2 C -0.06 -0.51 0.68 -154.51 -0.11 -0.61 16 3 C -0.14 -1.15 8.43 37.16 0.31 -0.84 16 4 C -0.15 -1.16 7.48 37.16 0.28 -0.89 16 5 C -0.09 -0.94 2.80 -89.81 -0.25 -1.19 16 6 C -0.13 -1.38 6.46 -25.92 -0.17 -1.55 16 7 C 0.07 0.83 4.28 -66.90 -0.29 0.54 16 8 N -0.67 -9.74 5.78 -105.87 -0.61 -10.35 16 9 C 0.07 1.25 4.49 -3.83 -0.02 1.23 16 10 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 11 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 12 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.93 7.65 -34.44 -0.26 -14.20 16 15 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.17 -1.82 6.81 -25.92 -0.18 -1.99 16 23 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 26 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 6.05 -51.93 -0.31 0.17 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 6.46 -51.93 -0.34 0.13 16 32 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.08 0.77 6.09 -51.93 -0.32 0.46 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 36 H 0.34 4.83 6.15 -39.29 -0.24 4.59 16 37 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 44 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.06 0.71 8.07 -51.93 -0.42 0.30 16 49 H 0.09 0.85 5.69 -51.93 -0.30 0.56 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -28.51 362.58 -9.00 -37.51 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.49 Total: 0.45 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -0.08 Total: -23.49 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.12 Total: -36.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.51 -9.00 -37.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339471332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.290 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds