Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 C 1.53004 * 109.46573 * 240.00151 * 2 1 3 5 5 C 1.52996 * 109.47403 * 120.00616 * 2 1 3 6 6 C 1.53784 * 113.61539 * 63.71087 * 5 2 1 7 7 C 1.53783 * 87.07744 * 139.98268 * 6 5 2 8 8 N 1.46900 * 113.61351 * 89.12233 * 7 6 5 9 9 C 1.46896 * 111.00428 * 154.99670 * 8 7 6 10 10 C 1.53001 * 109.47613 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47092 * 300.00124 * 10 9 8 12 12 C 1.53003 * 109.46832 * 59.99992 * 10 9 8 13 13 C 1.52995 * 109.47204 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.46817 * 180.02562 * 13 10 9 15 15 H 1.07996 * 120.00059 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99795 * 180.02562 * 14 13 10 17 17 N 1.31510 * 120.00003 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47038 * 119.99699 * 18 16 14 21 21 H 1.48496 * 109.46728 * 239.99817 * 18 16 14 22 22 C 1.53771 * 87.08464 * 334.56820 * 7 6 5 23 23 H 1.09009 * 109.46817 * 299.99839 * 1 2 3 24 24 H 1.09000 * 109.47300 * 59.99323 * 1 2 3 25 25 H 1.09000 * 109.47561 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46879 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47520 * 300.00543 * 3 2 1 28 28 H 1.08998 * 109.46921 * 60.00788 * 3 2 1 29 29 H 1.08998 * 109.47552 * 293.49440 * 4 2 1 30 30 H 1.08999 * 109.47033 * 53.49309 * 4 2 1 31 31 H 1.08997 * 109.46803 * 173.49184 * 4 2 1 32 32 H 1.08998 * 112.90672 * 292.46740 * 5 2 1 33 33 H 1.09001 * 113.61542 * 25.43728 * 6 5 2 34 34 H 1.08998 * 113.69123 * 254.54271 * 6 5 2 35 35 H 1.09005 * 113.61207 * 219.93212 * 7 6 5 36 36 H 1.00899 * 111.00038 * 278.95046 * 8 7 6 37 37 H 1.09004 * 109.47314 * 299.99866 * 9 8 7 38 38 H 1.09004 * 109.47103 * 59.99576 * 9 8 7 39 39 H 1.09003 * 109.46947 * 59.99590 * 11 10 9 40 40 H 1.08993 * 109.47036 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47144 * 299.99848 * 11 10 9 42 42 H 1.08995 * 109.46815 * 59.99870 * 12 10 9 43 43 H 1.09001 * 109.46996 * 179.97438 * 12 10 9 44 44 H 1.09003 * 109.47127 * 300.00361 * 12 10 9 45 45 H 1.08994 * 109.47458 * 300.00124 * 13 10 9 46 46 H 1.08995 * 109.47104 * 60.00108 * 13 10 9 47 47 H 0.97006 * 120.00186 * 180.02562 * 17 16 14 48 48 H 1.09005 * 113.61538 * 139.97881 * 22 7 6 49 49 H 1.08999 * 113.61870 * 270.88766 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2491 6 6 1.6571 -2.2098 1.3005 7 6 3.0674 -2.4726 1.8544 8 7 3.1491 -2.3908 3.3188 9 6 4.2717 -3.1892 3.8290 10 6 4.3246 -3.0789 5.3541 11 6 4.5174 -1.6145 5.7531 12 6 3.0153 -3.6015 5.9489 13 6 5.4942 -3.9100 5.8852 14 6 5.5458 -3.8018 7.3875 15 1 4.8176 -3.2001 7.9109 16 6 6.5236 -4.4702 8.0936 17 7 7.4107 -5.2024 7.4561 18 14 6.5881 -4.3355 9.9556 19 1 5.4871 -3.4575 10.4268 20 1 6.4362 -5.6856 10.5551 21 1 7.8925 -3.7560 10.3650 22 6 3.5031 -1.1825 1.1401 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.7747 -1.7770 -1.1931 30 1 1.5845 -0.2790 -2.1354 31 1 3.1236 -0.6215 -1.3095 32 1 1.8198 -0.1819 2.1702 33 1 1.4846 -2.6505 0.3185 34 1 0.8606 -2.4329 2.0103 35 1 3.5328 -3.3734 1.4542 36 1 3.2194 -1.4317 3.6241 37 1 4.1346 -4.2325 3.5443 38 1 5.2045 -2.8167 3.4055 39 1 3.6844 -1.0221 5.3746 40 1 4.5546 -1.5359 6.8396 41 1 5.4501 -1.2423 5.3294 42 1 2.8780 -4.6447 5.6645 43 1 3.0532 -3.5233 7.0354 44 1 2.1823 -3.0091 5.5703 45 1 5.3573 -4.9533 5.6010 46 1 6.4267 -3.5373 5.4615 47 1 8.0983 -5.6729 7.9529 48 1 4.1969 -0.5747 1.7209 49 1 3.8352 -1.3421 0.1142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339471332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = -29.497081 kcal Electronic energy + Delta-G solvation = -21380.179542 eV Core-core repulsion = 18533.862962 eV Total energy + Delta-G solvation = -2846.316580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10871 -38.88232 -36.42821 -34.62854 -32.63486 -28.94594 -28.38133 -28.14643 -27.89997 -26.82834 -26.07524 -25.34368 -24.06304 -20.88559 -19.48493 -18.84590 -18.33666 -16.89151 -16.66726 -16.30325 -15.74907 -15.45307 -15.19688 -15.05531 -14.64093 -14.41804 -14.13482 -13.89479 -13.68797 -13.49715 -13.24055 -13.07072 -12.85273 -12.71348 -12.66427 -12.48108 -12.38204 -12.31239 -12.26303 -12.15398 -11.88950 -11.86555 -11.72803 -11.39293 -11.17439 -10.93235 -10.90643 -10.80345 -10.51534 -10.50767 -9.19780 -8.14267 -6.21266 1.39964 1.40899 1.53239 2.43575 3.19675 3.23353 3.70185 3.74891 3.88167 4.03511 4.13073 4.18556 4.28820 4.37981 4.39776 4.40810 4.65647 4.72611 4.79936 4.82094 4.83537 4.87508 4.89368 4.95082 4.96352 5.04809 5.07455 5.11634 5.14050 5.20459 5.21199 5.24103 5.29132 5.34832 5.43061 5.48303 5.51448 5.53673 5.58096 5.58509 5.65001 5.71621 5.87353 5.92719 6.20863 6.38114 6.58338 6.94107 7.46105 8.98379 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043732 B = 0.003276 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.109058 B = 8545.511652 C = 8622.492908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.087 4.087 6 C -0.119 4.119 7 C 0.054 3.946 8 N -0.662 5.662 9 C 0.085 3.915 10 C -0.056 4.056 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.957 3.043 19 H -0.260 1.260 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.162 4.162 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.343 0.657 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.038 0.962 44 H 0.067 0.933 45 H -0.017 1.017 46 H -0.017 1.017 47 H 0.260 0.740 48 H 0.054 0.946 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 11.601 -16.481 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.056 4.056 8 N -0.294 5.294 9 C -0.044 4.044 10 C -0.057 4.057 11 C -0.178 4.178 12 C -0.163 4.163 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.201 4.201 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.442 11.006 -16.338 23.848 hybrid contribution 1.510 0.080 0.828 1.724 sum -11.932 11.087 -15.510 22.491 Atomic orbital electron populations 1.21813 0.94253 1.01828 1.01606 1.20420 0.95680 0.95206 0.94471 1.21831 1.00751 0.95357 1.01698 1.22007 1.00943 1.00523 0.96706 1.22456 0.94954 0.95227 0.97877 1.23101 0.96053 0.95832 1.00755 1.22676 0.98276 0.97555 0.87137 1.60379 1.44270 1.16178 1.08563 1.21817 0.90958 0.97193 0.94431 1.20509 0.96066 0.96052 0.93034 1.21671 0.99936 0.94936 1.01282 1.21490 0.96121 0.99272 0.99421 1.18998 0.92327 0.93280 0.95106 1.21653 1.12425 1.27962 0.93071 0.91572 1.25933 0.95637 0.95379 1.03233 1.70118 1.17764 1.32887 1.37225 0.85515 0.78129 0.77905 0.80239 1.18423 1.20832 1.20795 1.23771 0.97017 0.97420 1.01879 0.93042 0.92284 0.92630 0.93132 0.92236 0.92961 0.92245 0.92304 0.92570 0.90139 0.88833 0.91779 0.91292 0.83622 0.92720 0.96653 0.91579 0.93399 0.94524 0.95157 0.94265 0.91444 0.99838 0.99849 0.93166 0.92769 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.31 71.98 0.60 -1.30 16 2 C -0.06 -0.85 0.68 -52.18 -0.04 -0.88 16 3 C -0.14 -1.99 8.43 71.98 0.61 -1.38 16 4 C -0.14 -1.97 7.48 71.98 0.54 -1.43 16 5 C -0.09 -1.54 2.80 -10.27 -0.03 -1.56 16 6 C -0.12 -2.32 6.46 31.12 0.20 -2.12 16 7 C 0.05 1.28 4.28 45.44 0.19 1.47 16 8 N -0.66 -18.51 5.78 -488.86 -2.82 -21.33 16 9 C 0.09 2.99 4.49 86.30 0.39 3.38 16 10 C -0.06 -2.27 0.60 -52.18 -0.03 -2.30 16 11 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 12 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 13 C 0.04 2.13 4.04 29.85 0.12 2.25 16 14 C -0.51 -28.71 7.65 25.60 0.20 -28.51 16 15 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 18 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 C -0.16 -3.20 6.81 31.12 0.21 -2.99 16 23 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.78 7.56 -2.39 -0.02 0.76 16 26 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.81 6.05 -2.39 -0.01 0.79 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.78 6.46 -2.39 -0.02 0.77 16 32 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.09 1.59 6.09 -2.39 -0.01 1.57 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.74 7.87 -2.38 -0.02 1.72 16 36 H 0.34 9.09 6.15 -89.69 -0.55 8.54 16 37 H 0.05 2.03 8.13 -2.38 -0.02 2.01 16 38 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 40 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 44 H 0.07 2.26 7.60 -2.39 -0.02 2.25 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 47 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 48 H 0.05 1.17 8.07 -2.38 -0.02 1.15 16 49 H 0.10 1.73 5.69 -2.39 -0.01 1.71 16 Total: -1.00 -61.71 362.58 4.39 -57.32 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.33 Total: 17.40 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.57 Total: -42.60 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.54 Total: -78.98 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.71 4.39 -57.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339471332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.827 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds