Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 C 1.53001 * 109.47215 * 239.99978 * 2 1 3 5 5 C 1.53001 * 109.47079 * 119.99779 * 2 1 3 6 6 H 1.09000 * 112.85205 * 186.37945 * 5 2 1 7 7 C 1.53783 * 113.61133 * 55.18346 * 5 2 1 8 8 C 1.53787 * 87.17084 * 219.89168 * 7 5 2 9 9 C 1.53775 * 113.69033 * 317.64911 * 5 2 1 10 10 H 1.09009 * 113.61658 * 25.35522 * 9 5 2 11 11 N 1.46899 * 113.61536 * 254.53918 * 9 5 2 12 12 C 1.46900 * 111.00242 * 155.00126 * 11 9 5 13 13 C 1.53001 * 109.47436 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46928 * 299.99965 * 13 12 11 15 15 C 1.53002 * 109.47307 * 59.99529 * 13 12 11 16 16 C 1.52998 * 109.47519 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47209 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00100 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99932 * 180.02562 * 17 16 13 20 20 N 1.31516 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46813 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47272 * 119.99827 * 21 19 17 24 24 H 1.48504 * 109.46449 * 239.99970 * 21 19 17 25 25 H 1.08999 * 109.47584 * 306.34214 * 1 2 3 26 26 H 1.09007 * 109.46826 * 66.34016 * 1 2 3 27 27 H 1.09005 * 109.47035 * 186.33339 * 1 2 3 28 28 H 1.09006 * 109.47042 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47116 * 299.99955 * 3 2 1 30 30 H 1.09003 * 109.47233 * 59.99991 * 3 2 1 31 31 H 1.08998 * 109.47165 * 299.99722 * 4 2 1 32 32 H 1.08998 * 109.47098 * 59.99864 * 4 2 1 33 33 H 1.09006 * 109.47159 * 179.97438 * 4 2 1 34 34 H 1.08995 * 113.61534 * 334.48515 * 7 5 2 35 35 H 1.08995 * 113.61283 * 105.30194 * 7 5 2 36 36 H 1.09005 * 113.61126 * 140.02136 * 8 7 5 37 37 H 1.09001 * 113.61481 * 270.92664 * 8 7 5 38 38 H 1.00901 * 110.99644 * 31.04586 * 11 9 5 39 39 H 1.09003 * 109.46868 * 299.99579 * 12 11 9 40 40 H 1.09000 * 109.47274 * 59.99855 * 12 11 9 41 41 H 1.09003 * 109.47233 * 59.99546 * 14 13 12 42 42 H 1.09000 * 109.47064 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46861 * 299.99816 * 14 13 12 44 44 H 1.09005 * 109.46996 * 59.99765 * 15 13 12 45 45 H 1.09000 * 109.47505 * 180.02562 * 15 13 12 46 46 H 1.09007 * 109.47405 * 300.00714 * 15 13 12 47 47 H 1.09000 * 109.46841 * 300.00382 * 16 13 12 48 48 H 1.09000 * 109.47127 * 59.99659 * 16 13 12 49 49 H 0.96996 * 120.00147 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1222 -0.6577 1.3625 7 6 1.4868 -2.1475 1.4061 8 6 1.3656 -1.8533 2.9107 9 6 1.2648 -0.3643 2.5285 10 1 0.2448 -0.0282 2.3415 11 7 2.0020 0.5270 3.4340 12 6 1.0809 1.2922 4.2849 13 6 1.8838 2.2073 5.2116 14 6 2.8059 1.3604 6.0910 15 6 2.7240 3.1724 4.3728 16 6 0.9244 3.0048 6.0974 17 6 1.7153 3.9057 7.0106 18 1 2.7943 3.9095 6.9636 19 6 1.0614 4.7252 7.9060 20 7 -0.2525 4.7210 7.9629 21 14 2.0417 5.8425 9.0375 22 1 3.4923 5.6606 8.7773 23 1 1.6662 7.2565 8.7837 24 1 1.7457 5.4977 10.4513 25 1 -0.3634 0.6090 0.8277 26 1 -0.3633 0.4124 -0.9414 27 1 -0.3633 -1.0214 0.1134 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 0.5272 -2.3003 0.9124 35 1 2.2127 -2.9257 1.1704 36 1 0.4571 -2.2522 3.3618 37 1 2.2639 -2.0987 3.4773 38 1 2.6129 1.1421 2.9177 39 1 0.4243 1.8959 3.6584 40 1 0.4821 0.6047 4.8822 41 1 3.4894 0.7926 5.4597 42 1 3.3782 2.0124 6.7510 43 1 2.2074 0.6729 6.6887 44 1 2.0671 3.7757 3.7461 45 1 3.2963 3.8241 5.0329 46 1 3.4075 2.6046 3.7414 47 1 0.2678 3.6081 5.4705 48 1 0.3255 2.3176 6.6950 49 1 -0.7125 5.2972 8.5932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348213395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = -16.270871 kcal Electronic energy + Delta-G solvation = -21806.158574 eV Core-core repulsion = 18960.415525 eV Total energy + Delta-G solvation = -2845.743049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17323 -37.22596 -35.11650 -32.96421 -31.60198 -27.54959 -27.46341 -26.91593 -26.29187 -25.62782 -25.22517 -23.55648 -22.01283 -20.04579 -18.56466 -17.59573 -16.20045 -16.05707 -15.52638 -14.83315 -14.50629 -14.15078 -14.06534 -13.69347 -13.19280 -13.04004 -12.80314 -12.67785 -12.42463 -12.36179 -11.97800 -11.81744 -11.60835 -11.56700 -11.50727 -11.19622 -11.05299 -10.94924 -10.83454 -10.73054 -10.48524 -10.45644 -10.28179 -10.17469 -9.92699 -9.86048 -9.63674 -8.95327 -8.75938 -8.29403 -7.96039 -5.93749 -3.93617 3.33962 3.41749 3.45406 4.40819 4.49358 4.52878 4.57877 4.79374 4.92256 4.98807 5.10125 5.16373 5.39478 5.42160 5.46634 5.54255 5.57876 5.68494 5.73149 5.75604 5.79467 5.81637 5.88053 5.92489 5.96901 6.02817 6.06106 6.13967 6.17706 6.25306 6.28938 6.37628 6.41997 6.54325 6.57807 6.71251 6.84993 6.87401 7.25451 7.30361 7.31996 7.54478 7.73357 7.79916 7.90263 8.07056 8.51827 9.12154 9.69131 11.18000 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032679 B = 0.003867 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.600627 B = 7238.269954 C = 7442.331720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.101 4.101 6 H 0.092 0.908 7 C -0.139 4.139 8 C -0.128 4.128 9 C 0.062 3.938 10 H 0.074 0.926 11 N -0.675 5.675 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.337 0.663 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.012 0.988 48 H 0.014 0.986 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -11.691 -16.784 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.120 4.120 6 H 0.111 0.889 7 C -0.177 4.177 8 C -0.166 4.166 9 C -0.049 4.049 10 H 0.092 0.908 11 N -0.306 5.306 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.185 4.185 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.158 0.842 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.503 -12.083 -16.220 20.527 hybrid contribution -0.043 1.386 0.110 1.391 sum 3.460 -10.698 -16.110 19.645 Atomic orbital electron populations 1.22040 0.94896 1.01914 1.01590 1.20467 0.95433 0.95351 0.94889 1.21868 1.00936 0.95396 1.01755 1.21814 1.00826 1.00134 0.96684 1.22904 1.00037 0.95601 0.93449 0.88946 1.22874 1.01042 0.96390 0.97367 1.23016 1.02125 0.96067 0.95404 1.23272 0.96771 0.93652 0.91163 0.90785 1.60714 1.21389 1.24596 1.23942 1.22129 0.93901 0.94955 0.94845 1.20622 0.96349 0.94093 0.94807 1.21588 0.98666 0.98484 0.98491 1.21763 0.99026 0.98761 0.98997 1.19124 0.93605 0.94133 0.93546 1.21288 0.93125 1.21507 1.18416 0.92255 1.25017 0.94779 0.97341 0.97493 1.69979 1.07013 1.39667 1.37142 0.86618 0.80398 0.80656 0.80833 1.19774 1.21213 1.21169 0.92304 0.92954 0.92304 0.92644 0.92886 0.92567 0.92693 0.93027 0.92838 0.90186 0.91789 0.92195 0.89575 0.84236 0.96149 0.91768 0.93919 0.92815 0.94237 0.94190 0.91793 0.94871 0.96996 0.96735 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.52 37.16 0.28 -1.12 16 2 C -0.06 -0.57 0.68 -154.51 -0.10 -0.68 16 3 C -0.14 -1.42 8.42 37.16 0.31 -1.10 16 4 C -0.14 -1.13 8.33 37.16 0.31 -0.82 16 5 C -0.10 -1.03 2.60 -89.81 -0.23 -1.27 16 6 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 7 C -0.14 -1.33 6.70 -25.91 -0.17 -1.51 16 8 C -0.13 -1.48 7.90 -25.77 -0.20 -1.68 16 9 C 0.06 0.76 3.32 -66.76 -0.22 0.54 16 10 H 0.07 0.97 5.45 -51.92 -0.28 0.68 16 11 N -0.67 -9.83 5.77 -105.71 -0.61 -10.44 16 12 C 0.07 1.24 4.49 -3.82 -0.02 1.22 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 14 C -0.11 -2.27 8.06 37.16 0.30 -1.97 16 15 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 17 C -0.50 -13.95 7.65 -34.44 -0.26 -14.21 16 18 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 6.00 -51.93 -0.31 0.21 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 31 H 0.05 0.43 7.60 -51.93 -0.39 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.34 4.79 6.50 -39.29 -0.26 4.53 16 39 H 0.02 0.37 8.13 -51.93 -0.42 -0.06 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 42 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 46 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -28.59 363.10 -8.95 -37.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -9.50 Total: 0.82 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -0.03 Total: -23.80 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.13 Total: -36.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.59 -8.95 -37.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348213395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.270 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds