Wall clock time and date at job start Mon Mar 30 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 C 1.53001 * 109.47215 * 239.99978 * 2 1 3 5 5 C 1.53001 * 109.47079 * 119.99779 * 2 1 3 6 6 H 1.09000 * 112.85205 * 186.37945 * 5 2 1 7 7 C 1.53783 * 113.61133 * 55.18346 * 5 2 1 8 8 C 1.53787 * 87.17084 * 219.89168 * 7 5 2 9 9 C 1.53775 * 113.69033 * 317.64911 * 5 2 1 10 10 H 1.09009 * 113.61658 * 25.35522 * 9 5 2 11 11 N 1.46899 * 113.61536 * 254.53918 * 9 5 2 12 12 C 1.46900 * 111.00242 * 155.00126 * 11 9 5 13 13 C 1.53001 * 109.47436 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46928 * 299.99965 * 13 12 11 15 15 C 1.53002 * 109.47307 * 59.99529 * 13 12 11 16 16 C 1.52998 * 109.47519 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47209 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00100 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99932 * 180.02562 * 17 16 13 20 20 N 1.31516 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46813 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47272 * 119.99827 * 21 19 17 24 24 H 1.48504 * 109.46449 * 239.99970 * 21 19 17 25 25 H 1.08999 * 109.47584 * 306.34214 * 1 2 3 26 26 H 1.09007 * 109.46826 * 66.34016 * 1 2 3 27 27 H 1.09005 * 109.47035 * 186.33339 * 1 2 3 28 28 H 1.09006 * 109.47042 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47116 * 299.99955 * 3 2 1 30 30 H 1.09003 * 109.47233 * 59.99991 * 3 2 1 31 31 H 1.08998 * 109.47165 * 299.99722 * 4 2 1 32 32 H 1.08998 * 109.47098 * 59.99864 * 4 2 1 33 33 H 1.09006 * 109.47159 * 179.97438 * 4 2 1 34 34 H 1.08995 * 113.61534 * 334.48515 * 7 5 2 35 35 H 1.08995 * 113.61283 * 105.30194 * 7 5 2 36 36 H 1.09005 * 113.61126 * 140.02136 * 8 7 5 37 37 H 1.09001 * 113.61481 * 270.92664 * 8 7 5 38 38 H 1.00901 * 110.99644 * 31.04586 * 11 9 5 39 39 H 1.09003 * 109.46868 * 299.99579 * 12 11 9 40 40 H 1.09000 * 109.47274 * 59.99855 * 12 11 9 41 41 H 1.09003 * 109.47233 * 59.99546 * 14 13 12 42 42 H 1.09000 * 109.47064 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46861 * 299.99816 * 14 13 12 44 44 H 1.09005 * 109.46996 * 59.99765 * 15 13 12 45 45 H 1.09000 * 109.47505 * 180.02562 * 15 13 12 46 46 H 1.09007 * 109.47405 * 300.00714 * 15 13 12 47 47 H 1.09000 * 109.46841 * 300.00382 * 16 13 12 48 48 H 1.09000 * 109.47127 * 59.99659 * 16 13 12 49 49 H 0.96996 * 120.00147 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1222 -0.6577 1.3625 7 6 1.4868 -2.1475 1.4061 8 6 1.3656 -1.8533 2.9107 9 6 1.2648 -0.3643 2.5285 10 1 0.2448 -0.0282 2.3415 11 7 2.0020 0.5270 3.4340 12 6 1.0809 1.2922 4.2849 13 6 1.8838 2.2073 5.2116 14 6 2.8059 1.3604 6.0910 15 6 2.7240 3.1724 4.3728 16 6 0.9244 3.0048 6.0974 17 6 1.7153 3.9057 7.0106 18 1 2.7943 3.9095 6.9636 19 6 1.0614 4.7252 7.9060 20 7 -0.2525 4.7210 7.9629 21 14 2.0417 5.8425 9.0375 22 1 3.4923 5.6606 8.7773 23 1 1.6662 7.2565 8.7837 24 1 1.7457 5.4977 10.4513 25 1 -0.3634 0.6090 0.8277 26 1 -0.3633 0.4124 -0.9414 27 1 -0.3633 -1.0214 0.1134 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 0.5272 -2.3003 0.9124 35 1 2.2127 -2.9257 1.1704 36 1 0.4571 -2.2522 3.3618 37 1 2.2639 -2.0987 3.4773 38 1 2.6129 1.1421 2.9177 39 1 0.4243 1.8959 3.6584 40 1 0.4821 0.6047 4.8822 41 1 3.4894 0.7926 5.4597 42 1 3.3782 2.0124 6.7510 43 1 2.2074 0.6729 6.6887 44 1 2.0671 3.7757 3.7461 45 1 3.2963 3.8241 5.0329 46 1 3.4075 2.6046 3.7414 47 1 0.2678 3.6081 5.4705 48 1 0.3255 2.3176 6.6950 49 1 -0.7125 5.2972 8.5932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348213395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:49 Heat of formation + Delta-G solvation = -30.769815 kcal Electronic energy + Delta-G solvation = -21806.787295 eV Core-core repulsion = 18960.415525 eV Total energy + Delta-G solvation = -2846.371770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07928 -38.80616 -36.05768 -34.78799 -33.19481 -29.01314 -28.25019 -28.20042 -27.88674 -26.96747 -26.16989 -25.06404 -23.54313 -20.93236 -19.76931 -18.91020 -18.33382 -17.15283 -16.55113 -16.41166 -15.91011 -15.26263 -15.18010 -14.93611 -14.70349 -14.35890 -14.07209 -13.85645 -13.79144 -13.31715 -13.22072 -13.15685 -12.82020 -12.71073 -12.61297 -12.42548 -12.35069 -12.29826 -12.28070 -12.25229 -12.02612 -11.84949 -11.71695 -11.39683 -11.26988 -11.07694 -10.88099 -10.71949 -10.52659 -10.51571 -9.19280 -8.14284 -6.21463 1.39835 1.40704 1.53131 2.43530 3.19590 3.36500 3.64021 3.74945 3.89550 4.06555 4.12294 4.17103 4.25237 4.30305 4.34259 4.39441 4.62667 4.66409 4.75574 4.78820 4.81762 4.86284 4.93669 4.95705 5.01567 5.03008 5.07868 5.10069 5.12683 5.18824 5.20995 5.21484 5.23566 5.37018 5.40239 5.50400 5.51704 5.53468 5.54504 5.58471 5.63642 5.70735 5.87523 5.92668 6.24636 6.39198 6.60947 6.93895 7.46005 8.98382 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032679 B = 0.003867 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.600627 B = 7238.269954 C = 7442.331720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.091 4.091 6 H 0.093 0.907 7 C -0.126 4.126 8 C -0.131 4.131 9 C 0.052 3.948 10 H 0.067 0.933 11 N -0.669 5.669 12 C 0.085 3.915 13 C -0.055 4.055 14 C -0.105 4.105 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.342 0.658 39 H 0.011 0.989 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.035 0.965 45 H 0.047 0.953 46 H 0.066 0.934 47 H -0.018 1.018 48 H -0.018 1.018 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -12.518 -18.214 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 C -0.199 4.199 4 C -0.191 4.191 5 C -0.110 4.110 6 H 0.111 0.889 7 C -0.163 4.163 8 C -0.169 4.169 9 C -0.058 4.058 10 H 0.085 0.915 11 N -0.301 5.301 12 C -0.044 4.044 13 C -0.055 4.055 14 C -0.162 4.162 15 C -0.177 4.177 16 C 0.003 3.997 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.782 3.218 22 H -0.184 1.184 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.319 -12.923 -17.665 22.524 hybrid contribution -0.653 1.616 0.535 1.823 sum 4.666 -11.307 -17.130 21.049 Atomic orbital electron populations 1.22034 0.95081 1.02040 1.01229 1.20455 0.95239 0.95048 0.95175 1.21869 1.01271 0.95697 1.01111 1.21778 1.01054 1.00327 0.95940 1.22834 0.99676 0.95967 0.92497 0.88918 1.22820 1.01797 0.96226 0.95478 1.23022 1.01678 0.95279 0.96962 1.23411 0.96678 0.93469 0.92234 0.91544 1.60681 1.20849 1.24031 1.24522 1.21801 0.93715 0.94279 0.94615 1.20493 0.95761 0.94441 0.94837 1.21484 0.98458 0.97976 0.98316 1.21665 0.98974 0.98389 0.98718 1.19005 0.93813 0.93511 0.93406 1.21650 0.93603 1.21428 1.18425 0.91560 1.25931 0.95762 0.99117 0.99333 1.70120 1.08844 1.40829 1.38221 0.85514 0.79390 0.78415 0.78467 1.18403 1.20762 1.20837 0.94077 0.92256 0.91601 0.92078 0.92337 0.94431 0.92016 0.92500 0.92455 0.89340 0.90392 0.92563 0.90200 0.83790 0.97032 0.93131 0.91389 0.94295 0.95269 0.94619 0.93416 0.91530 0.99954 0.99968 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 7.52 71.98 0.54 -2.02 16 2 C -0.06 -0.98 0.68 -52.18 -0.04 -1.02 16 3 C -0.14 -2.60 8.42 71.98 0.61 -1.99 16 4 C -0.13 -1.80 8.33 71.98 0.60 -1.20 16 5 C -0.09 -1.66 2.60 -10.27 -0.03 -1.69 16 6 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.13 -2.08 6.70 31.12 0.21 -1.88 16 8 C -0.13 -2.84 7.90 31.21 0.25 -2.60 16 9 C 0.05 1.23 3.32 45.53 0.15 1.38 16 10 H 0.07 1.72 5.45 -2.38 -0.01 1.71 16 11 N -0.67 -18.80 5.77 -488.37 -2.82 -21.62 16 12 C 0.09 3.04 4.49 86.30 0.39 3.43 16 13 C -0.05 -2.24 0.60 -52.18 -0.03 -2.27 16 14 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 15 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 16 C 0.04 2.14 4.04 29.85 0.12 2.26 16 17 C -0.51 -28.84 7.65 25.60 0.20 -28.65 16 18 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 19 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 20 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 21 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H 0.04 0.86 6.44 -2.39 -0.02 0.84 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.07 1.04 6.00 -2.38 -0.01 1.03 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.82 7.98 -2.39 -0.02 0.80 16 31 H 0.06 0.76 7.60 -2.39 -0.02 0.74 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 1.35 6.02 -2.39 -0.01 1.33 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.34 9.08 6.50 -89.69 -0.58 8.50 16 39 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 42 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 46 H 0.07 2.00 6.57 -2.38 -0.02 1.98 16 47 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 48 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -62.36 363.10 4.37 -58.00 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.30 Total: 17.98 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 4.57 Total: -43.46 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.53 Total: -79.50 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.36 4.37 -58.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348213395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds