Wall clock time and date at job start Mon Mar 30 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 C 1.53006 * 109.46916 * 240.00701 * 2 1 3 5 5 C 1.52994 * 109.47251 * 120.00642 * 2 1 3 6 6 H 1.09004 * 112.84955 * 199.23281 * 5 2 1 7 7 C 1.53786 * 113.69014 * 330.49455 * 5 2 1 8 8 C 1.53779 * 87.08065 * 139.99572 * 7 5 2 9 9 C 1.53770 * 113.61626 * 68.02943 * 5 2 1 10 10 H 1.09003 * 113.61141 * 105.30582 * 9 5 2 11 11 N 1.46892 * 113.61700 * 334.48556 * 9 5 2 12 12 C 1.46907 * 111.00393 * 150.84419 * 11 9 5 13 13 C 1.52998 * 109.47314 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.46850 * 60.00195 * 13 12 11 15 15 C 1.52996 * 109.47181 * 299.99798 * 13 12 11 16 16 C 1.53004 * 109.46829 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.46816 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99559 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99991 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99744 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46880 * 90.00372 * 21 19 17 23 23 H 1.48504 * 109.46917 * 210.00055 * 21 19 17 24 24 H 1.48500 * 109.47152 * 330.00213 * 21 19 17 25 25 H 1.09000 * 109.47614 * 304.93797 * 1 2 3 26 26 H 1.09000 * 109.47128 * 64.94510 * 1 2 3 27 27 H 1.09004 * 109.46895 * 184.93646 * 1 2 3 28 28 H 1.09001 * 109.47032 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47670 * 300.00505 * 3 2 1 30 30 H 1.09003 * 109.46803 * 60.00630 * 3 2 1 31 31 H 1.08997 * 109.47016 * 299.99303 * 4 2 1 32 32 H 1.08996 * 109.47111 * 59.99815 * 4 2 1 33 33 H 1.09001 * 109.46616 * 179.97438 * 4 2 1 34 34 H 1.09007 * 113.61319 * 254.54527 * 7 5 2 35 35 H 1.08994 * 113.61411 * 25.36142 * 7 5 2 36 36 H 1.08999 * 113.61465 * 220.02133 * 8 7 5 37 37 H 1.09002 * 113.61414 * 89.11319 * 8 7 5 38 38 H 1.00899 * 111.00243 * 274.79398 * 11 9 5 39 39 H 1.08994 * 109.47147 * 59.99387 * 12 11 9 40 40 H 1.09009 * 109.46714 * 300.00229 * 12 11 9 41 41 H 1.09004 * 109.46740 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46909 * 299.99670 * 14 13 12 43 43 H 1.08993 * 109.47408 * 59.99904 * 14 13 12 44 44 H 1.08991 * 109.47020 * 299.99842 * 15 13 12 45 45 H 1.09003 * 109.47145 * 59.99983 * 15 13 12 46 46 H 1.09004 * 109.46751 * 179.97438 * 15 13 12 47 47 H 1.09000 * 109.46936 * 60.00613 * 16 13 12 48 48 H 1.08997 * 109.47149 * 299.99820 * 16 13 12 49 49 H 0.96999 * 119.99497 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7214 1.2491 6 1 3.0753 -0.4763 1.4864 7 6 1.0905 -0.6164 2.4542 8 6 1.4274 -2.0878 2.7479 9 6 1.7484 -2.2312 1.2508 10 1 2.6257 -2.8455 1.0479 11 7 0.5873 -2.6072 0.4334 12 6 0.7358 -3.9689 -0.0974 13 6 -0.4903 -4.3241 -0.9409 14 6 -0.6146 -3.3351 -2.1017 15 6 -1.7467 -4.2500 -0.0709 16 6 -0.3353 -5.7422 -1.4941 17 6 -1.5427 -6.0918 -2.3255 18 1 -2.3405 -5.3741 -2.4474 19 6 -1.6287 -7.3277 -2.9304 20 7 -0.6573 -8.2018 -2.7815 21 14 -3.1250 -7.7608 -3.9615 22 1 -2.8859 -7.3632 -5.3722 23 1 -3.3658 -9.2246 -3.8938 24 1 -4.3125 -7.0390 -3.4381 25 1 -0.3634 0.5885 0.8424 26 1 -0.3633 0.4352 -0.9310 27 1 -0.3633 -1.0239 0.0884 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2072 -2.1393 33 1 3.1300 -0.7207 -1.2496 34 1 1.4369 0.0730 3.2243 35 1 0.0493 -0.4524 2.1767 36 1 0.5681 -2.6769 3.0685 37 1 2.2952 -2.2164 3.3948 38 1 -0.2695 -2.5152 0.9582 39 1 0.8240 -4.6735 0.7295 40 1 1.6312 -4.0218 -0.7168 41 1 -1.4883 -3.5878 -2.7023 42 1 -0.7248 -2.3247 -1.7079 43 1 0.2805 -3.3879 -2.7214 44 1 -1.6581 -4.9546 0.7559 45 1 -1.8569 -3.2396 0.3229 46 1 -2.6202 -4.5026 -0.6721 47 1 -0.2465 -6.4470 -0.6674 48 1 0.5597 -5.7945 -2.1140 49 1 -0.7177 -9.0711 -3.2074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348213397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:54 Heat of formation + Delta-G solvation = 1.228049 kcal Electronic energy + Delta-G solvation = -22392.453637 eV Core-core repulsion = 19547.469399 eV Total energy + Delta-G solvation = -2844.984238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36664 -37.09893 -34.92270 -32.92945 -31.51675 -27.37130 -27.10975 -26.87504 -26.29408 -25.37596 -25.25089 -23.75783 -22.23498 -19.88108 -18.19785 -17.72557 -16.29027 -15.75916 -15.38950 -14.73137 -14.58816 -14.14699 -13.87835 -13.57989 -13.32653 -12.87633 -12.76296 -12.56484 -12.25561 -12.14945 -11.98035 -11.90431 -11.54062 -11.15741 -11.09218 -10.97196 -10.91278 -10.77111 -10.75463 -10.64988 -10.46986 -10.31038 -10.15466 -10.11786 -9.88187 -9.79897 -9.61215 -8.99104 -8.79631 -8.30251 -7.86708 -5.94916 -3.94876 3.34218 3.40850 3.43400 4.29063 4.50850 4.63632 4.74862 4.87675 5.02622 5.22953 5.29424 5.40963 5.41639 5.64974 5.67155 5.71712 5.78909 5.80061 5.81627 5.87271 5.91920 5.98096 6.00089 6.08751 6.14955 6.21192 6.26610 6.30829 6.35603 6.42907 6.49705 6.54639 6.56221 6.66766 6.77974 6.83290 6.85202 6.99376 7.23305 7.28908 7.29535 7.46340 7.69227 7.73202 7.87675 8.05638 8.49998 9.10664 9.67968 11.16750 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.004425 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.978230 B = 6325.844351 C = 6613.967746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.036 4.036 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.092 4.092 6 H 0.081 0.919 7 C -0.141 4.141 8 C -0.171 4.171 9 C 0.072 3.928 10 H 0.076 0.924 11 N -0.653 5.653 12 C 0.066 3.934 13 C -0.057 4.057 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.340 0.660 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.012 0.988 48 H 0.014 0.986 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 15.868 9.047 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.112 4.112 6 H 0.099 0.901 7 C -0.178 4.178 8 C -0.210 4.210 9 C -0.039 4.039 10 H 0.094 0.906 11 N -0.286 5.286 12 C -0.062 4.062 13 C -0.058 4.058 14 C -0.175 4.175 15 C -0.186 4.186 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.903 15.972 8.424 18.711 hybrid contribution -0.771 -0.855 0.252 1.178 sum 4.132 15.116 8.676 17.912 Atomic orbital electron populations 1.22408 0.94707 1.04710 0.99572 1.20092 0.95878 0.93116 0.94568 1.21945 1.00221 0.96964 1.00905 1.21954 0.99080 1.03324 0.95693 1.22728 0.98330 0.95439 0.94657 0.90063 1.23116 1.00937 0.96010 0.97750 1.23551 1.01512 0.97644 0.98259 1.22630 0.94671 0.96112 0.90488 0.90616 1.60788 1.03383 1.25982 1.38416 1.22219 0.99798 0.86927 0.97291 1.20617 0.92089 0.98666 0.94394 1.21646 1.01154 0.97281 0.97391 1.21774 0.99399 0.98236 0.99230 1.19115 0.97063 0.88655 0.95506 1.21241 1.04396 0.99158 1.29626 0.92320 1.25009 0.96061 0.96696 0.96802 1.69970 1.32300 1.06854 1.44655 0.86681 0.83545 0.77447 0.80840 1.20794 1.21428 1.19959 0.94282 0.94110 0.88039 0.93488 0.93235 0.93431 0.89095 0.94023 0.94586 0.92477 0.89121 0.91717 0.90422 0.83843 0.95802 0.91508 0.92844 0.93602 0.94182 0.94141 0.94920 0.91753 0.96997 0.96724 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.01 37.16 0.26 -1.56 16 2 C -0.04 -0.41 0.69 -154.51 -0.11 -0.51 16 3 C -0.14 -1.46 8.45 37.16 0.31 -1.15 16 4 C -0.14 -1.81 8.11 37.16 0.30 -1.51 16 5 C -0.09 -0.99 3.18 -89.81 -0.29 -1.27 16 6 H 0.08 0.85 8.10 -51.93 -0.42 0.42 16 7 C -0.14 -1.40 7.02 -25.92 -0.18 -1.59 16 8 C -0.17 -1.78 7.60 -25.92 -0.20 -1.97 16 9 C 0.07 0.84 3.46 -66.91 -0.23 0.61 16 10 H 0.08 0.94 7.83 -51.93 -0.41 0.54 16 11 N -0.65 -8.49 1.24 -105.87 -0.13 -8.62 16 12 C 0.07 1.07 4.09 -3.82 -0.02 1.05 16 13 C -0.06 -1.09 0.60 -154.51 -0.09 -1.18 16 14 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 15 C -0.13 -2.31 7.89 37.16 0.29 -2.02 16 16 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 17 C -0.51 -13.70 7.65 -34.44 -0.26 -13.96 16 18 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.04 0.42 6.62 -51.93 -0.34 0.07 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 1.26 3.65 -51.93 -0.19 1.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 1.29 5.41 -51.93 -0.28 1.01 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.09 0.93 5.49 -51.93 -0.29 0.64 16 36 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.34 4.35 5.16 -39.29 -0.20 4.15 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 1.14 8.02 -51.92 -0.42 0.72 16 41 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 42 H 0.05 0.75 7.03 -51.93 -0.37 0.38 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 46 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -27.60 353.68 -8.49 -36.09 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -9.28 Total: 1.49 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -0.12 Total: -24.76 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.60 Total: -34.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.60 -8.49 -36.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348213397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.315 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds