Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46888 * 2 1 4 4 C 1.53000 * 109.46524 * 240.00738 * 2 1 3 5 5 C 1.52990 * 109.47454 * 120.00351 * 2 1 3 6 6 H 1.08999 * 112.91077 * 186.19164 * 5 2 1 7 7 C 1.53779 * 113.61545 * 317.44077 * 5 2 1 8 8 C 1.54059 * 87.07800 * 139.97560 * 7 5 2 9 9 C 1.53776 * 113.61485 * 54.93954 * 5 2 1 10 10 H 1.09001 * 113.62065 * 334.56727 * 9 5 2 11 11 N 1.46898 * 113.61784 * 105.38688 * 9 5 2 12 12 C 1.46894 * 111.00508 * 203.47318 * 11 9 5 13 13 C 1.53005 * 109.47324 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47160 * 299.99806 * 13 12 11 15 15 C 1.53003 * 109.46916 * 60.00206 * 13 12 11 16 16 C 1.53001 * 109.46975 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47187 * 180.02562 * 16 13 12 18 18 H 1.08003 * 119.99663 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00058 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00288 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46680 * 60.00235 * 21 19 17 23 23 H 1.48500 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47248 * 300.00721 * 21 19 17 25 25 H 1.09001 * 109.47157 * 306.26757 * 1 2 3 26 26 H 1.08998 * 109.47913 * 66.26805 * 1 2 3 27 27 H 1.09005 * 109.47179 * 186.27386 * 1 2 3 28 28 H 1.09002 * 109.46600 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47294 * 300.00532 * 3 2 1 30 30 H 1.08997 * 109.46879 * 60.00766 * 3 2 1 31 31 H 1.09002 * 109.46780 * 299.99451 * 4 2 1 32 32 H 1.08996 * 109.47540 * 60.00012 * 4 2 1 33 33 H 1.09002 * 109.46970 * 180.02562 * 4 2 1 34 34 H 1.08994 * 113.62055 * 254.52856 * 7 5 2 35 35 H 1.08999 * 113.61623 * 25.35136 * 7 5 2 36 36 H 1.08997 * 113.69486 * 220.05187 * 8 7 5 37 37 H 1.08998 * 113.60749 * 89.07390 * 8 7 5 38 38 H 1.00900 * 111.00174 * 79.51556 * 11 9 5 39 39 H 1.08997 * 109.47181 * 299.99685 * 12 11 9 40 40 H 1.09003 * 109.47164 * 59.99629 * 12 11 9 41 41 H 1.08998 * 109.47175 * 59.99718 * 14 13 12 42 42 H 1.09004 * 109.47257 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47210 * 299.99964 * 14 13 12 44 44 H 1.08997 * 109.47347 * 60.00129 * 15 13 12 45 45 H 1.09004 * 109.46789 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.46643 * 299.99806 * 15 13 12 47 47 H 1.08997 * 109.47539 * 300.00025 * 16 13 12 48 48 H 1.09003 * 109.47156 * 60.00182 * 16 13 12 49 49 H 0.96997 * 120.00158 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0398 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.1225 -0.6611 1.3615 7 6 1.2669 -0.3594 2.5282 8 6 1.3631 -1.8481 2.9131 9 6 1.4823 -2.1454 1.4090 10 1 0.5218 -2.2961 0.9163 11 7 2.4569 -3.1980 1.0927 12 6 1.7802 -4.4472 0.7193 13 6 2.8255 -5.5170 0.3972 14 6 3.6988 -5.0428 -0.7661 15 6 3.7023 -5.7601 1.6273 16 6 2.1205 -6.8182 0.0088 17 6 3.1501 -7.8722 -0.3079 18 1 4.2020 -7.6373 -0.2394 19 6 2.7491 -9.1360 -0.6860 20 7 1.4682 -9.4217 -0.7707 21 14 4.0254 -10.4422 -1.0792 22 1 4.8764 -10.6780 0.1148 23 1 3.3411 -11.7052 -1.4560 24 1 4.8732 -9.9819 -2.2082 25 1 -0.3633 0.6079 0.8286 26 1 -0.3635 0.4136 -0.9407 27 1 -0.3634 -1.0215 0.1123 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9565 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7488 -1.2494 32 1 1.6765 -0.2072 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 1.8166 0.3013 3.1985 35 1 0.2480 -0.0204 2.3415 36 1 0.4537 -2.2432 3.3656 37 1 2.2609 -2.0954 3.4795 38 1 3.0913 -3.3468 1.8631 39 1 1.1576 -4.7849 1.5478 40 1 1.1558 -4.2742 -0.1573 41 1 4.2010 -4.1159 -0.4890 42 1 4.4433 -5.8052 -0.9959 43 1 3.0741 -4.8697 -1.6424 44 1 3.0801 -6.0980 2.4560 45 1 4.4473 -6.5219 1.3976 46 1 4.2044 -4.8332 1.9043 47 1 1.4986 -7.1560 0.8378 48 1 1.4956 -6.6454 -0.8674 49 1 1.1861 -10.3107 -1.0371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348213398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -15.716147 kcal Electronic energy + Delta-G solvation = -21793.964300 eV Core-core repulsion = 18948.245306 eV Total energy + Delta-G solvation = -2845.718994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13726 -37.24497 -35.14770 -32.89406 -31.54667 -27.41700 -27.32937 -26.89185 -26.29354 -25.50932 -25.30728 -23.54777 -22.00464 -20.26280 -18.53498 -17.56498 -16.19312 -15.80372 -15.61819 -14.65158 -14.34907 -14.16613 -14.01701 -13.69341 -13.22265 -13.01604 -12.85147 -12.61748 -12.34782 -12.16945 -11.97101 -11.83611 -11.58038 -11.50963 -11.44169 -11.25828 -10.96907 -10.91768 -10.82563 -10.75554 -10.45689 -10.40064 -10.26487 -10.17027 -9.98024 -9.88389 -9.62908 -8.95419 -8.77784 -8.28837 -7.89705 -5.93540 -3.93590 3.36324 3.40860 3.43185 4.41617 4.52355 4.56997 4.67652 4.75111 4.93412 5.05786 5.11205 5.24821 5.42170 5.53582 5.55963 5.59081 5.67730 5.72012 5.73809 5.83159 5.86144 5.86854 5.91592 5.94434 6.00688 6.02900 6.07549 6.18450 6.25653 6.31898 6.34940 6.40073 6.52866 6.57378 6.57454 6.71068 6.84966 6.87139 7.25238 7.30301 7.31579 7.52105 7.72784 7.79508 7.90087 8.06982 8.51662 9.11697 9.69045 11.18126 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032731 B = 0.003859 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.258636 B = 7253.207799 C = 7455.979010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.085 4.085 6 H 0.089 0.911 7 C -0.141 4.141 8 C -0.173 4.173 9 C 0.073 3.927 10 H 0.096 0.904 11 N -0.673 5.673 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.338 0.662 39 H 0.021 0.979 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 19.815 4.569 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.056 4.056 3 C -0.195 4.195 4 C -0.191 4.191 5 C -0.104 4.104 6 H 0.108 0.892 7 C -0.179 4.179 8 C -0.212 4.212 9 C -0.038 4.038 10 H 0.114 0.886 11 N -0.304 5.304 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.185 4.185 16 C -0.003 4.003 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.158 0.842 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.529 19.851 3.860 20.230 hybrid contribution 0.232 -1.186 0.679 1.386 sum -0.297 18.665 4.539 19.211 Atomic orbital electron populations 1.22030 0.95267 1.01841 1.01166 1.20383 0.94989 0.94809 0.95457 1.21837 1.00834 0.95781 1.01096 1.21756 1.01102 1.00761 0.95493 1.22738 0.99752 0.94930 0.93020 0.89247 1.22984 1.01028 0.96151 0.97758 1.23661 1.01856 0.97165 0.98518 1.23168 0.95828 0.91674 0.93154 0.88642 1.60498 1.18647 1.07704 1.43509 1.22103 0.96170 0.88724 0.98763 1.20622 0.94730 0.95486 0.95027 1.21582 0.99259 0.99277 0.97075 1.21761 0.99858 0.99599 0.97325 1.19114 0.95283 0.89723 0.96214 1.21211 0.93049 0.95457 1.44783 0.92380 1.25009 0.95007 0.98570 0.95972 1.69956 1.14161 1.21034 1.48668 0.86737 0.81746 0.81195 0.78788 1.20379 1.21456 1.20310 0.92692 0.93017 0.92348 0.92870 0.93111 0.93052 0.91728 0.93763 0.92728 0.91970 0.89814 0.91919 0.90328 0.84181 0.96068 0.91833 0.93867 0.92861 0.94268 0.94186 0.91835 0.94853 0.97009 0.96758 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.53 37.16 0.28 -1.11 16 2 C -0.06 -0.56 0.68 -154.51 -0.10 -0.67 16 3 C -0.14 -1.23 8.42 37.16 0.31 -0.92 16 4 C -0.13 -1.53 8.33 37.16 0.31 -1.22 16 5 C -0.09 -0.90 2.83 -89.82 -0.25 -1.15 16 6 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 7 C -0.14 -1.34 7.24 -25.77 -0.19 -1.53 16 8 C -0.17 -1.86 7.72 -25.77 -0.20 -2.06 16 9 C 0.07 0.87 2.80 -66.90 -0.19 0.69 16 10 H 0.10 1.22 5.75 -51.93 -0.30 0.92 16 11 N -0.67 -9.52 5.82 -105.87 -0.62 -10.14 16 12 C 0.07 1.22 4.50 -3.82 -0.02 1.21 16 13 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 14 C -0.11 -2.23 8.07 37.15 0.30 -1.93 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 16 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.95 7.65 -34.44 -0.26 -14.22 16 18 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.60 6.00 -51.93 -0.31 0.29 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.42 8.05 -51.93 -0.42 0.01 16 31 H 0.06 0.85 7.61 -51.93 -0.40 0.46 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.75 5.72 -51.93 -0.30 0.46 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.84 7.83 -51.93 -0.41 0.44 16 38 H 0.34 4.69 6.25 -39.29 -0.25 4.45 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 42 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 46 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -28.29 362.73 -8.94 -37.23 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -9.48 Total: 1.08 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.02 Total: -24.04 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.12 Total: -36.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.29 -8.94 -37.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348213398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.513 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds