Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46888 * 2 1 4 4 C 1.53000 * 109.46524 * 240.00738 * 2 1 3 5 5 C 1.52990 * 109.47454 * 120.00351 * 2 1 3 6 6 H 1.08999 * 112.91077 * 186.19164 * 5 2 1 7 7 C 1.53779 * 113.61545 * 317.44077 * 5 2 1 8 8 C 1.54059 * 87.07800 * 139.97560 * 7 5 2 9 9 C 1.53776 * 113.61485 * 54.93954 * 5 2 1 10 10 H 1.09001 * 113.62065 * 334.56727 * 9 5 2 11 11 N 1.46898 * 113.61784 * 105.38688 * 9 5 2 12 12 C 1.46894 * 111.00508 * 203.47318 * 11 9 5 13 13 C 1.53005 * 109.47324 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47160 * 299.99806 * 13 12 11 15 15 C 1.53003 * 109.46916 * 60.00206 * 13 12 11 16 16 C 1.53001 * 109.46975 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47187 * 180.02562 * 16 13 12 18 18 H 1.08003 * 119.99663 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00058 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00288 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46680 * 60.00235 * 21 19 17 23 23 H 1.48500 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47248 * 300.00721 * 21 19 17 25 25 H 1.09001 * 109.47157 * 306.26757 * 1 2 3 26 26 H 1.08998 * 109.47913 * 66.26805 * 1 2 3 27 27 H 1.09005 * 109.47179 * 186.27386 * 1 2 3 28 28 H 1.09002 * 109.46600 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47294 * 300.00532 * 3 2 1 30 30 H 1.08997 * 109.46879 * 60.00766 * 3 2 1 31 31 H 1.09002 * 109.46780 * 299.99451 * 4 2 1 32 32 H 1.08996 * 109.47540 * 60.00012 * 4 2 1 33 33 H 1.09002 * 109.46970 * 180.02562 * 4 2 1 34 34 H 1.08994 * 113.62055 * 254.52856 * 7 5 2 35 35 H 1.08999 * 113.61623 * 25.35136 * 7 5 2 36 36 H 1.08997 * 113.69486 * 220.05187 * 8 7 5 37 37 H 1.08998 * 113.60749 * 89.07390 * 8 7 5 38 38 H 1.00900 * 111.00174 * 79.51556 * 11 9 5 39 39 H 1.08997 * 109.47181 * 299.99685 * 12 11 9 40 40 H 1.09003 * 109.47164 * 59.99629 * 12 11 9 41 41 H 1.08998 * 109.47175 * 59.99718 * 14 13 12 42 42 H 1.09004 * 109.47257 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47210 * 299.99964 * 14 13 12 44 44 H 1.08997 * 109.47347 * 60.00129 * 15 13 12 45 45 H 1.09004 * 109.46789 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.46643 * 299.99806 * 15 13 12 47 47 H 1.08997 * 109.47539 * 300.00025 * 16 13 12 48 48 H 1.09003 * 109.47156 * 60.00182 * 16 13 12 49 49 H 0.96997 * 120.00158 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0398 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 1 3.1225 -0.6611 1.3615 7 6 1.2669 -0.3594 2.5282 8 6 1.3631 -1.8481 2.9131 9 6 1.4823 -2.1454 1.4090 10 1 0.5218 -2.2961 0.9163 11 7 2.4569 -3.1980 1.0927 12 6 1.7802 -4.4472 0.7193 13 6 2.8255 -5.5170 0.3972 14 6 3.6988 -5.0428 -0.7661 15 6 3.7023 -5.7601 1.6273 16 6 2.1205 -6.8182 0.0088 17 6 3.1501 -7.8722 -0.3079 18 1 4.2020 -7.6373 -0.2394 19 6 2.7491 -9.1360 -0.6860 20 7 1.4682 -9.4217 -0.7707 21 14 4.0254 -10.4422 -1.0792 22 1 4.8764 -10.6780 0.1148 23 1 3.3411 -11.7052 -1.4560 24 1 4.8732 -9.9819 -2.2082 25 1 -0.3633 0.6079 0.8286 26 1 -0.3635 0.4136 -0.9407 27 1 -0.3634 -1.0215 0.1123 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9565 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7488 -1.2494 32 1 1.6765 -0.2072 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 1.8166 0.3013 3.1985 35 1 0.2480 -0.0204 2.3415 36 1 0.4537 -2.2432 3.3656 37 1 2.2609 -2.0954 3.4795 38 1 3.0913 -3.3468 1.8631 39 1 1.1576 -4.7849 1.5478 40 1 1.1558 -4.2742 -0.1573 41 1 4.2010 -4.1159 -0.4890 42 1 4.4433 -5.8052 -0.9959 43 1 3.0741 -4.8697 -1.6424 44 1 3.0801 -6.0980 2.4560 45 1 4.4473 -6.5219 1.3976 46 1 4.2044 -4.8332 1.9043 47 1 1.4986 -7.1560 0.8378 48 1 1.4956 -6.6454 -0.8674 49 1 1.1861 -10.3107 -1.0371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348213398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = -30.002660 kcal Electronic energy + Delta-G solvation = -21794.583810 eV Core-core repulsion = 18948.245306 eV Total energy + Delta-G solvation = -2846.338504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04935 -38.79911 -36.14259 -34.73313 -33.08083 -28.99728 -28.16318 -28.11126 -27.87924 -26.90678 -26.17219 -25.05176 -23.52682 -21.15254 -19.74142 -18.87490 -18.31960 -16.94052 -16.57930 -16.41475 -15.73103 -15.23011 -15.09576 -14.87746 -14.66189 -14.39211 -14.11465 -13.84897 -13.75769 -13.33990 -13.12090 -13.05306 -12.83818 -12.73476 -12.65785 -12.40982 -12.34684 -12.25971 -12.24957 -12.13883 -12.07333 -11.90261 -11.71049 -11.37284 -11.20926 -11.05408 -10.85938 -10.78625 -10.51310 -10.49835 -9.07472 -8.13623 -6.20902 1.40631 1.43043 1.50337 2.43917 3.20061 3.34694 3.71162 3.83229 3.89070 4.02930 4.16685 4.19728 4.28235 4.32166 4.39829 4.45052 4.68574 4.72997 4.80917 4.82594 4.85147 4.90371 4.95240 4.97852 4.99379 5.05976 5.09109 5.11814 5.15928 5.19928 5.22467 5.23067 5.28837 5.38928 5.45974 5.50748 5.52302 5.54456 5.59303 5.64465 5.66429 5.75237 5.88896 5.93296 6.24916 6.39813 6.64367 6.94150 7.46459 8.98599 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032731 B = 0.003859 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.258636 B = 7253.207799 C = 7455.979010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.134 4.134 4 C -0.131 4.131 5 C -0.079 4.079 6 H 0.086 0.914 7 C -0.129 4.129 8 C -0.171 4.171 9 C 0.063 3.937 10 H 0.086 0.914 11 N -0.668 5.668 12 C 0.087 3.913 13 C -0.055 4.055 14 C -0.104 4.104 15 C -0.120 4.120 16 C 0.041 3.959 17 C -0.515 4.515 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.268 1.268 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.343 0.657 39 H 0.012 0.988 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.067 0.933 47 H -0.018 1.018 48 H -0.018 1.018 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 21.637 5.390 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.192 4.192 4 C -0.188 4.188 5 C -0.098 4.098 6 H 0.105 0.895 7 C -0.167 4.167 8 C -0.210 4.210 9 C -0.047 4.047 10 H 0.104 0.896 11 N -0.299 5.299 12 C -0.043 4.043 13 C -0.055 4.055 14 C -0.161 4.161 15 C -0.178 4.178 16 C 0.003 3.997 17 C -0.553 4.553 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.193 1.193 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.163 0.837 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.845 21.695 4.690 22.212 hybrid contribution -0.239 -1.723 0.410 1.787 sum 0.606 19.972 5.099 20.622 Atomic orbital electron populations 1.22018 0.94867 1.01368 1.01932 1.20380 0.95298 0.95469 0.94397 1.21794 1.00807 0.94702 1.01855 1.21722 1.00681 0.99675 0.96759 1.22675 0.99652 0.93504 0.93944 0.89546 1.22934 1.01412 0.95385 0.96939 1.23644 1.01976 0.98209 0.97163 1.23283 0.95171 0.91767 0.94479 0.89623 1.60459 1.19011 1.06359 1.44021 1.21764 0.95081 0.89440 0.97984 1.20488 0.95310 0.93633 0.96062 1.21470 0.98506 0.99792 0.96349 1.21668 0.99105 1.00767 0.96243 1.18997 0.94568 0.92436 0.93679 1.21597 0.93747 0.96026 1.43954 0.91623 1.25921 0.97009 1.01156 0.95977 1.70105 1.16332 1.21606 1.49942 0.85638 0.79131 0.78097 0.79026 1.19228 1.21322 1.19331 0.91352 0.92718 0.93580 0.92898 0.92662 0.92022 0.94029 0.93150 0.93241 0.90589 0.89099 0.92161 0.89906 0.83678 0.96942 0.93141 0.91353 0.94438 0.95371 0.94607 0.93552 0.91393 0.99959 0.99997 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.53 71.98 0.54 -1.98 16 2 C -0.06 -1.01 0.68 -52.18 -0.04 -1.04 16 3 C -0.13 -2.04 8.42 71.98 0.61 -1.43 16 4 C -0.13 -2.88 8.33 71.98 0.60 -2.28 16 5 C -0.08 -1.49 2.83 -10.27 -0.03 -1.52 16 6 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 7 C -0.13 -2.09 7.24 31.21 0.23 -1.86 16 8 C -0.17 -3.34 7.72 31.22 0.24 -3.10 16 9 C 0.06 1.45 2.80 45.44 0.13 1.58 16 10 H 0.09 2.17 5.75 -2.39 -0.01 2.16 16 11 N -0.67 -18.16 5.82 -488.87 -2.85 -21.01 16 12 C 0.09 3.02 4.50 86.31 0.39 3.41 16 13 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 14 C -0.10 -4.02 8.07 71.98 0.58 -3.44 16 15 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 16 C 0.04 2.15 4.04 29.85 0.12 2.27 16 17 C -0.52 -28.91 7.65 25.60 0.20 -28.71 16 18 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 21 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.91 6.00 -2.38 -0.01 0.90 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.82 8.05 -2.39 -0.02 0.80 16 31 H 0.04 1.09 7.61 -2.39 -0.02 1.08 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.37 5.72 -2.39 -0.01 1.35 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 38 H 0.34 8.78 6.25 -89.69 -0.56 8.22 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 41 H 0.07 2.28 7.60 -2.39 -0.02 2.27 16 42 H 0.04 1.54 6.62 -2.38 -0.02 1.53 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.84 6.62 -2.38 -0.02 1.82 16 46 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 47 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 48 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -61.92 362.73 4.35 -57.57 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.32 Total: 18.28 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 4.56 Total: -43.92 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.56 Total: -78.82 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.92 4.35 -57.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348213398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.572 kcal (2) G-P(sol) polarization free energy of solvation -61.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds