Wall clock time and date at job start Mon Mar 30 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47519 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99991 * 2 1 3 5 5 C 1.53000 * 109.47222 * 174.99803 * 4 2 1 6 6 C 1.53001 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47680 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.47671 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00240 * 270.00099 * 9 8 7 11 11 H 1.07997 * 120.00637 * 142.01152 * 10 9 8 12 12 C 1.38820 * 119.99728 * 322.00793 * 10 9 8 13 13 N 1.31617 * 120.00002 * 156.08926 * 12 10 9 14 14 Si 1.86802 * 120.00010 * 336.09427 * 12 10 9 15 15 H 1.48507 * 109.46917 * 95.28647 * 14 12 10 16 16 H 1.48496 * 109.46914 * 215.28529 * 14 12 10 17 17 H 1.48502 * 109.47090 * 335.29092 * 14 12 10 18 18 C 1.46507 * 120.00087 * 89.99706 * 9 8 7 19 19 C 1.54266 * 110.03254 * 242.57987 * 18 9 8 20 20 C 1.54962 * 104.16081 * 217.13647 * 19 18 9 21 21 C 1.54889 * 102.77997 * 37.88795 * 20 19 18 22 22 C 1.53870 * 110.03320 * 125.36281 * 18 9 8 23 23 H 1.09001 * 109.47144 * 300.00445 * 1 2 3 24 24 H 1.09001 * 109.46988 * 60.00115 * 1 2 3 25 25 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47144 * 239.99555 * 2 1 3 27 27 H 1.08995 * 109.46849 * 59.99675 * 3 2 1 28 28 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46896 * 299.99940 * 3 2 1 30 30 H 1.09002 * 109.47457 * 54.99854 * 4 2 1 31 31 H 1.09005 * 109.46829 * 294.99946 * 4 2 1 32 32 H 1.09001 * 109.47077 * 60.00193 * 5 4 2 33 33 H 1.08999 * 109.46922 * 299.99720 * 5 4 2 34 34 H 1.09005 * 109.47386 * 59.99532 * 6 5 4 35 35 H 1.09005 * 109.46829 * 300.00143 * 6 5 4 36 36 H 1.09005 * 109.47220 * 59.99274 * 7 6 5 37 37 H 1.08999 * 109.47126 * 300.00298 * 7 6 5 38 38 H 1.08992 * 109.47577 * 59.99651 * 8 7 6 39 39 H 1.09005 * 109.46754 * 299.99935 * 8 7 6 40 40 H 0.96997 * 119.99896 * 180.02562 * 13 12 10 41 41 H 1.08997 * 110.01725 * 3.97135 * 18 9 8 42 42 H 1.08997 * 110.48506 * 335.78556 * 19 18 9 43 43 H 1.09006 * 110.48623 * 98.42714 * 19 18 9 44 44 H 1.09001 * 110.72050 * 279.57458 * 20 19 18 45 45 H 1.09003 * 110.92406 * 156.29988 * 20 19 18 46 46 H 1.08997 * 110.48998 * 203.40959 * 21 20 19 47 47 H 1.09000 * 110.59508 * 80.81413 * 21 20 19 48 48 H 1.09002 * 110.03461 * 238.57223 * 22 18 9 49 49 H 1.09004 * 110.03262 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4369 7 6 5.5996 -1.6622 2.3760 8 6 6.1094 -2.3846 3.6246 9 7 7.5695 -2.4898 3.5659 10 6 8.1544 -3.5787 2.9768 11 1 9.0509 -3.4572 2.3870 12 6 7.5949 -4.8390 3.1376 13 7 7.8286 -5.7810 2.2486 14 14 6.5104 -5.1978 4.6157 15 1 5.0857 -5.0087 4.2417 16 1 6.7244 -6.5991 5.0580 17 1 6.8590 -4.2706 5.7221 18 6 8.4038 -1.4298 4.1376 19 6 9.2520 -0.7701 3.0307 20 6 10.6087 -0.4740 3.7184 21 6 10.8088 -1.7113 4.6284 22 6 9.3930 -2.0277 5.1533 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.9994 0.1675 1.1421 33 1 3.8531 -1.3941 0.3003 34 1 3.6400 -2.5515 2.4825 35 1 3.7863 -0.9903 3.3249 36 1 6.0340 -0.6635 2.3307 37 1 5.8883 -2.2245 1.4880 38 1 5.6751 -3.3832 3.6695 39 1 5.8206 -1.8226 4.5128 40 1 7.4374 -6.6615 2.3609 41 1 7.7766 -0.6821 4.6230 42 1 9.3897 -1.4566 2.1954 43 1 8.7850 0.1549 2.6925 44 1 10.5488 0.4373 4.3133 45 1 11.4102 -0.4015 2.9832 46 1 11.4776 -1.4727 5.4553 47 1 11.1990 -2.5511 4.0534 48 1 9.2464 -1.5696 6.1314 49 1 9.2520 -3.1065 5.2213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383330282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:28 Heat of formation + Delta-G solvation = -28.742765 kcal Electronic energy + Delta-G solvation = -21269.324296 eV Core-core repulsion = 18423.040425 eV Total energy + Delta-G solvation = -2846.283870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -37.97240 -37.24980 -35.15881 -33.32275 -31.40744 -29.47196 -27.88428 -27.27859 -26.89112 -25.45700 -23.00485 -21.40335 -20.58090 -20.00325 -19.76930 -18.87245 -16.32839 -15.72514 -15.33058 -15.27694 -14.53772 -14.36831 -14.14217 -13.78017 -13.46605 -12.95719 -12.82392 -12.51270 -12.48991 -12.30947 -11.96432 -11.85107 -11.63182 -11.40926 -11.10041 -10.96650 -10.79652 -10.66770 -10.58215 -10.49230 -10.42421 -10.32421 -10.28634 -10.15021 -10.00910 -9.87104 -9.71301 -9.51850 -9.32290 -8.40248 -6.68231 -5.94392 -3.32563 3.35164 3.50456 3.56454 4.58307 4.69873 4.83513 4.89271 5.01189 5.28349 5.30804 5.37830 5.42300 5.48215 5.50777 5.56161 5.63990 5.68020 5.69065 5.75097 5.86649 5.96010 6.00404 6.05020 6.08482 6.11952 6.21928 6.24876 6.25851 6.28362 6.37068 6.40485 6.43828 6.47925 6.50770 6.56593 6.59601 6.61533 6.69488 6.78544 6.99803 7.01531 7.12864 7.21398 7.24752 8.14646 8.48499 9.10517 9.80623 10.23418 11.21618 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.004677 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.662587 B = 5985.802117 C = 7086.786939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.131 4.131 8 C 0.138 3.862 9 N -0.601 5.601 10 C -0.255 4.255 11 H 0.078 0.922 12 C 0.037 3.963 13 N -0.900 5.900 14 Si 0.869 3.131 15 H -0.287 1.287 16 H -0.304 1.304 17 H -0.269 1.269 18 C 0.173 3.827 19 C -0.134 4.134 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.134 4.134 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.042 0.958 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 12.529 -0.325 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.171 4.171 8 C 0.012 3.988 9 N -0.322 5.322 10 C -0.383 4.383 11 H 0.096 0.904 12 C -0.163 4.163 13 N -0.542 5.542 14 Si 0.700 3.300 15 H -0.215 1.215 16 H -0.232 1.232 17 H -0.194 1.194 18 C 0.066 3.934 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.173 4.173 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.742 12.339 -0.359 14.571 hybrid contribution -0.668 -0.400 0.800 1.116 sum -8.410 11.940 0.441 14.611 Atomic orbital electron populations 1.21846 0.95677 1.01538 1.01371 1.21143 0.95276 0.96448 0.98897 1.21887 1.01499 0.95964 1.01208 1.21680 0.96280 1.00138 0.97168 1.21642 0.94485 1.00612 0.98814 1.21592 0.97169 0.99974 0.97030 1.22101 0.92902 1.00427 1.01659 1.21186 0.84861 0.98276 0.94434 1.44312 0.99647 1.21355 1.66931 1.18610 1.11760 0.83759 1.24198 0.90422 1.25458 0.98050 0.95642 0.97115 1.69891 1.46422 1.04454 1.33386 0.87040 0.80096 0.76452 0.86429 1.21513 1.23198 1.19411 1.21026 0.91274 0.89714 0.91380 1.22837 0.94766 0.99528 1.00181 1.22434 0.97826 0.97453 0.98337 1.22239 0.97196 0.97794 0.98227 1.22548 0.94517 1.02924 0.97314 0.92892 0.93033 0.92817 0.91311 0.92924 0.92207 0.93194 0.92183 0.92305 0.92121 0.92116 0.92514 0.92923 0.93187 0.91461 0.93029 0.94880 0.92898 0.93273 0.90395 0.93481 0.92759 0.92755 0.93351 0.91638 0.93917 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.15 0.34 -0.98 16 2 C -0.10 -1.01 2.92 -90.62 -0.26 -1.28 16 3 C -0.15 -1.42 8.95 37.16 0.33 -1.09 16 4 C -0.12 -1.33 4.68 -26.73 -0.13 -1.45 16 5 C -0.12 -1.58 4.97 -26.73 -0.13 -1.71 16 6 C -0.12 -1.88 5.21 -26.73 -0.14 -2.02 16 7 C -0.13 -2.47 5.54 -26.74 -0.15 -2.62 16 8 C 0.14 2.98 4.51 -4.05 -0.02 2.96 16 9 N -0.60 -13.94 2.02 -164.40 -0.33 -14.27 16 10 C -0.25 -6.88 8.19 -15.06 -0.12 -7.01 16 11 H 0.08 2.29 7.09 -52.49 -0.37 1.91 16 12 C 0.04 1.06 5.27 -17.43 -0.09 0.97 16 13 N -0.90 -27.25 13.97 55.49 0.78 -26.47 16 14 Si 0.87 22.21 25.19 -169.99 -4.28 17.93 16 15 H -0.29 -7.18 6.65 56.52 0.38 -6.81 16 16 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.17 3.45 3.42 -66.81 -0.23 3.22 16 19 C -0.13 -2.45 6.43 -25.03 -0.16 -2.61 16 20 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 21 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 22 C -0.13 -2.59 6.24 -25.61 -0.16 -2.75 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.05 1.23 3.44 -51.93 -0.18 1.05 16 39 H 0.03 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 42 H 0.08 1.64 6.65 -51.93 -0.35 1.29 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.80 7.17 -51.93 -0.37 1.43 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -28.47 367.52 -9.52 -37.99 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.96 Total: -0.09 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -1.26 Total: -20.62 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.44 Total: -40.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.28 Total: 17.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.47 -9.52 -37.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383330282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.250 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds