Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 C 1.52997 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.57663 * 305.00120 * 4 3 2 6 6 C 1.50460 * 109.57537 * 65.24752 * 4 3 2 7 7 C 1.54431 * 112.96555 * 211.89010 * 6 4 3 8 8 C 1.54062 * 112.36716 * 318.48399 * 7 6 4 9 9 N 1.44273 * 111.97888 * 318.84506 * 8 7 6 10 10 C 1.46903 * 110.99917 * 219.31590 * 9 8 7 11 11 C 1.53001 * 109.47090 * 302.67434 * 10 9 8 12 12 C 1.52998 * 109.47077 * 185.03070 * 11 10 9 13 13 C 1.53001 * 109.47077 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46989 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00198 * 0.02562 * 14 13 12 16 16 C 1.37888 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99816 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47183 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47295 * 120.00118 * 18 16 14 21 21 H 1.48503 * 109.47040 * 240.00538 * 18 16 14 22 22 C 1.47804 * 109.45588 * 96.44667 * 9 8 7 23 23 C 1.45855 * 112.92306 * 276.72681 * 22 9 8 24 24 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47298 * 299.99939 * 1 2 3 26 26 H 1.08994 * 109.47306 * 60.00081 * 1 2 3 27 27 H 1.08998 * 109.47298 * 240.00061 * 2 1 3 28 28 H 1.09004 * 109.47314 * 119.99964 * 2 1 3 29 29 H 1.08998 * 109.47016 * 59.99888 * 3 2 1 30 30 H 1.08994 * 109.46995 * 300.00109 * 3 2 1 31 31 H 1.09003 * 108.77366 * 333.01090 * 6 4 3 32 32 H 1.09008 * 108.77366 * 91.17006 * 6 4 3 33 33 H 1.08999 * 108.92980 * 197.69754 * 7 6 4 34 34 H 1.08997 * 108.74563 * 79.14162 * 7 6 4 35 35 H 1.08999 * 108.97979 * 198.20568 * 8 7 6 36 36 H 1.09000 * 108.98428 * 79.49073 * 8 7 6 37 37 H 1.08995 * 109.46943 * 62.67616 * 10 9 8 38 38 H 1.09007 * 109.47028 * 182.67771 * 10 9 8 39 39 H 1.09003 * 109.47410 * 305.03377 * 11 10 9 40 40 H 1.08999 * 109.47081 * 65.02945 * 11 10 9 41 41 H 1.08994 * 109.47708 * 300.00003 * 12 11 10 42 42 H 1.09005 * 109.46872 * 60.00556 * 12 11 10 43 43 H 1.09003 * 109.47410 * 300.00307 * 13 12 11 44 44 H 1.08999 * 109.47081 * 59.99874 * 13 12 11 45 45 H 0.96999 * 119.99732 * 179.97438 * 17 16 14 46 46 H 1.08996 * 108.79072 * 155.83535 * 22 9 8 47 47 H 1.09001 * 108.70209 * 37.55261 * 22 9 8 48 48 H 1.09005 * 109.06224 * 300.78524 * 23 22 9 49 49 H 1.09000 * 109.05928 * 181.86354 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9348 0.8535 0.8422 6 6 4.0746 0.8488 -1.2864 7 6 5.4139 0.0983 -1.1195 8 6 6.3959 0.8490 -0.1999 9 7 6.3860 2.2707 -0.4453 10 6 7.7434 2.8273 -0.3708 11 6 8.3479 2.5157 0.9998 12 6 9.7101 3.2012 1.1241 13 6 10.3148 2.8891 2.4945 14 6 11.6562 3.5647 2.6172 15 1 12.0390 4.1577 1.7998 16 6 12.3945 3.4266 3.7736 17 7 11.9281 2.7048 4.7691 18 14 14.0569 4.2647 3.9260 19 1 14.3510 5.0119 2.6768 20 1 14.0324 5.2083 5.0724 21 1 15.1088 3.2407 4.1501 22 6 5.4885 2.9315 0.5255 23 6 4.0876 2.8934 0.1213 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.3258 0.1560 -1.6705 32 1 4.2123 1.6503 -2.0123 33 1 5.8734 -0.0274 -2.0998 34 1 5.2137 -0.8853 -0.6947 35 1 7.4027 0.4671 -0.3694 36 1 6.1194 0.6665 0.8385 37 1 8.3618 2.3823 -1.1503 38 1 7.7016 3.9073 -0.5124 39 1 7.6835 2.8831 1.7820 40 1 8.4724 1.4380 1.1055 41 1 10.3745 2.8338 0.3421 42 1 9.5855 4.2789 1.0185 43 1 9.6506 3.2561 3.2769 44 1 10.4394 1.8113 2.5997 45 1 12.4477 2.6074 5.5825 46 1 5.7943 3.9720 0.6345 47 1 5.5894 2.4336 1.4898 48 1 3.9817 3.3902 -0.8432 49 1 3.4890 3.4244 0.8614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385226508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = -45.732127 kcal Electronic energy + Delta-G solvation = -20871.349106 eV Core-core repulsion = 18024.328521 eV Total energy + Delta-G solvation = -2847.020584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72347 -36.86042 -34.51865 -33.17693 -32.48858 -31.81137 -29.02243 -27.33576 -25.84158 -24.22913 -23.77114 -22.15138 -21.30134 -20.30514 -19.90195 -19.01122 -16.21186 -15.92223 -15.89696 -15.14740 -14.82047 -14.60194 -14.46054 -14.24855 -13.96269 -13.30523 -13.13276 -12.93947 -12.70273 -12.26925 -12.16540 -11.96145 -11.69999 -11.60459 -11.51524 -11.40660 -11.02001 -10.93062 -10.89975 -10.63370 -10.56093 -10.51110 -10.38981 -10.36529 -10.22071 -10.01495 -9.62558 -9.39804 -9.05929 -8.33786 -8.03015 -5.98500 -4.00689 3.31352 3.38618 3.43112 4.04564 4.47059 4.47456 4.67157 4.76165 4.93561 5.01151 5.06018 5.23174 5.26767 5.29448 5.36649 5.37335 5.41524 5.45787 5.55837 5.59057 5.64491 5.69389 5.78375 5.80356 5.83760 5.89702 5.90675 6.00297 6.07114 6.08933 6.13137 6.18999 6.24505 6.27028 6.33242 6.35984 6.47616 6.51815 6.76778 6.93616 7.15735 7.26335 7.34644 7.70262 7.85312 8.02342 8.45594 9.07137 9.63307 11.12890 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039186 B = 0.002803 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.363144 B = 9985.837284 C =10162.249914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.084 4.084 5 H 0.066 0.934 6 C -0.106 4.106 7 C -0.108 4.108 8 C 0.052 3.948 9 N -0.528 5.528 10 C 0.055 3.945 11 C -0.153 4.153 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.052 3.948 23 C -0.108 4.108 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.066 0.934 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.927 -4.318 -11.539 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.103 4.103 5 H 0.085 0.915 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.077 4.077 9 N -0.250 5.250 10 C -0.073 4.073 11 C -0.192 4.192 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.075 4.075 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.073 -4.284 -11.865 24.560 hybrid contribution 1.347 0.248 1.136 1.780 sum -19.726 -4.036 -10.728 22.815 Atomic orbital electron populations 1.21779 0.96202 1.01368 1.01641 1.21614 0.95440 0.97308 1.02127 1.21668 0.95186 0.96459 1.01750 1.20959 0.94309 0.96344 0.98685 0.91528 1.21335 0.95778 0.99784 0.97420 1.21952 0.95315 0.97619 0.99776 1.21902 0.99212 0.88679 0.97869 1.61835 1.09399 1.03608 1.50201 1.22424 0.87653 1.00038 0.97183 1.22320 0.98936 1.00956 0.96970 1.21552 0.93549 0.98667 1.00741 1.19099 0.95185 0.96711 0.90648 1.21332 1.03275 1.30643 1.00452 0.92675 1.25050 0.98145 0.95481 0.95951 1.69980 1.38118 1.40144 1.05398 0.86548 0.84160 0.79358 0.78021 1.19731 1.21027 1.21018 1.20991 0.93406 0.99492 0.93632 1.20651 0.95475 0.96394 1.02045 0.92998 0.92897 0.92894 0.91708 0.92164 0.92213 0.92138 0.92693 0.91793 0.92285 0.92669 0.91694 0.94193 0.90963 0.90978 0.92601 0.92563 0.93474 0.93503 0.96881 0.96860 0.93113 0.91504 0.94417 0.91535 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.97 5.73 -26.73 -0.15 -1.13 16 3 C -0.11 -0.92 4.60 -26.73 -0.12 -1.04 16 4 C -0.08 -0.80 1.86 -91.09 -0.17 -0.97 16 5 H 0.07 0.71 7.15 -51.92 -0.37 0.33 16 6 C -0.11 -1.02 4.88 -27.25 -0.13 -1.16 16 7 C -0.11 -1.13 6.14 -25.43 -0.16 -1.29 16 8 C 0.05 0.65 4.09 -4.67 -0.02 0.63 16 9 N -0.53 -6.82 4.45 -239.56 -1.07 -7.89 16 10 C 0.05 0.78 5.05 -3.82 -0.02 0.76 16 11 C -0.15 -2.62 4.66 -26.73 -0.12 -2.74 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.05 0.64 3.95 -6.71 -0.03 0.61 16 23 C -0.11 -1.10 4.92 -29.32 -0.14 -1.24 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.49 6.25 -51.93 -0.32 0.17 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 5.76 -51.93 -0.30 0.18 16 32 H 0.06 0.68 7.39 -51.92 -0.38 0.30 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.85 6.86 -51.93 -0.36 0.49 16 36 H 0.04 0.52 6.51 -51.93 -0.34 0.18 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.07 1.02 7.93 -51.93 -0.41 0.60 16 39 H 0.06 0.98 6.89 -51.93 -0.36 0.63 16 40 H 0.06 0.99 6.90 -51.93 -0.36 0.63 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.83 7.67 -51.93 -0.40 0.44 16 47 H 0.04 0.50 6.76 -51.93 -0.35 0.15 16 48 H 0.07 0.69 7.59 -51.93 -0.39 0.30 16 49 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -29.80 362.51 -11.07 -40.86 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -9.79 Total: -4.58 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.39 Total: -24.06 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.33 Total: -34.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.80 -11.07 -40.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.868 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds