Wall clock time and date at job start Mon Mar 30 2020 07:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 C 1.52997 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.57663 * 305.00120 * 4 3 2 6 6 C 1.50460 * 109.57537 * 65.24752 * 4 3 2 7 7 C 1.54431 * 112.96555 * 211.89010 * 6 4 3 8 8 C 1.54062 * 112.36716 * 318.48399 * 7 6 4 9 9 N 1.44273 * 111.97888 * 318.84506 * 8 7 6 10 10 C 1.46903 * 110.99917 * 219.31590 * 9 8 7 11 11 C 1.53001 * 109.47090 * 302.67434 * 10 9 8 12 12 C 1.52998 * 109.47077 * 185.03070 * 11 10 9 13 13 C 1.53001 * 109.47077 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46989 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00198 * 0.02562 * 14 13 12 16 16 C 1.37888 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99816 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47183 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47295 * 120.00118 * 18 16 14 21 21 H 1.48503 * 109.47040 * 240.00538 * 18 16 14 22 22 C 1.47804 * 109.45588 * 96.44667 * 9 8 7 23 23 C 1.45855 * 112.92306 * 276.72681 * 22 9 8 24 24 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47298 * 299.99939 * 1 2 3 26 26 H 1.08994 * 109.47306 * 60.00081 * 1 2 3 27 27 H 1.08998 * 109.47298 * 240.00061 * 2 1 3 28 28 H 1.09004 * 109.47314 * 119.99964 * 2 1 3 29 29 H 1.08998 * 109.47016 * 59.99888 * 3 2 1 30 30 H 1.08994 * 109.46995 * 300.00109 * 3 2 1 31 31 H 1.09003 * 108.77366 * 333.01090 * 6 4 3 32 32 H 1.09008 * 108.77366 * 91.17006 * 6 4 3 33 33 H 1.08999 * 108.92980 * 197.69754 * 7 6 4 34 34 H 1.08997 * 108.74563 * 79.14162 * 7 6 4 35 35 H 1.08999 * 108.97979 * 198.20568 * 8 7 6 36 36 H 1.09000 * 108.98428 * 79.49073 * 8 7 6 37 37 H 1.08995 * 109.46943 * 62.67616 * 10 9 8 38 38 H 1.09007 * 109.47028 * 182.67771 * 10 9 8 39 39 H 1.09003 * 109.47410 * 305.03377 * 11 10 9 40 40 H 1.08999 * 109.47081 * 65.02945 * 11 10 9 41 41 H 1.08994 * 109.47708 * 300.00003 * 12 11 10 42 42 H 1.09005 * 109.46872 * 60.00556 * 12 11 10 43 43 H 1.09003 * 109.47410 * 300.00307 * 13 12 11 44 44 H 1.08999 * 109.47081 * 59.99874 * 13 12 11 45 45 H 0.96999 * 119.99732 * 179.97438 * 17 16 14 46 46 H 1.08996 * 108.79072 * 155.83535 * 22 9 8 47 47 H 1.09001 * 108.70209 * 37.55261 * 22 9 8 48 48 H 1.09005 * 109.06224 * 300.78524 * 23 22 9 49 49 H 1.09000 * 109.05928 * 181.86354 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9348 0.8535 0.8422 6 6 4.0746 0.8488 -1.2864 7 6 5.4139 0.0983 -1.1195 8 6 6.3959 0.8490 -0.1999 9 7 6.3860 2.2707 -0.4453 10 6 7.7434 2.8273 -0.3708 11 6 8.3479 2.5157 0.9998 12 6 9.7101 3.2012 1.1241 13 6 10.3148 2.8891 2.4945 14 6 11.6562 3.5647 2.6172 15 1 12.0390 4.1577 1.7998 16 6 12.3945 3.4266 3.7736 17 7 11.9281 2.7048 4.7691 18 14 14.0569 4.2647 3.9260 19 1 14.3510 5.0119 2.6768 20 1 14.0324 5.2083 5.0724 21 1 15.1088 3.2407 4.1501 22 6 5.4885 2.9315 0.5255 23 6 4.0876 2.8934 0.1213 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.3258 0.1560 -1.6705 32 1 4.2123 1.6503 -2.0123 33 1 5.8734 -0.0274 -2.0998 34 1 5.2137 -0.8853 -0.6947 35 1 7.4027 0.4671 -0.3694 36 1 6.1194 0.6665 0.8385 37 1 8.3618 2.3823 -1.1503 38 1 7.7016 3.9073 -0.5124 39 1 7.6835 2.8831 1.7820 40 1 8.4724 1.4380 1.1055 41 1 10.3745 2.8338 0.3421 42 1 9.5855 4.2789 1.0185 43 1 9.6506 3.2561 3.2769 44 1 10.4394 1.8113 2.5997 45 1 12.4477 2.6074 5.5825 46 1 5.7943 3.9720 0.6345 47 1 5.5894 2.4336 1.4898 48 1 3.9817 3.3902 -0.8432 49 1 3.4890 3.4244 0.8614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385226508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:06 Heat of formation + Delta-G solvation = -60.591273 kcal Electronic energy + Delta-G solvation = -20871.993447 eV Core-core repulsion = 18024.328521 eV Total energy + Delta-G solvation = -2847.664925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68927 -37.84436 -36.12198 -34.56927 -33.39060 -33.33810 -30.42630 -28.53453 -27.00011 -25.70901 -24.68513 -23.50552 -22.08534 -21.96178 -20.88160 -20.00308 -18.44899 -16.96332 -16.85377 -16.48093 -16.17614 -15.75711 -15.65108 -15.23470 -14.83838 -14.61351 -14.26271 -13.98280 -13.86139 -13.68259 -13.54836 -13.26835 -12.89777 -12.79922 -12.66337 -12.50030 -12.36135 -12.18035 -12.08281 -11.98715 -11.78842 -11.64591 -11.46031 -11.42058 -11.31114 -11.27138 -11.12406 -11.03303 -10.80183 -10.59402 -9.18939 -8.22855 -6.34830 1.37699 1.38188 1.51931 2.38607 3.00634 3.09625 3.69943 3.90989 3.96296 4.04170 4.09266 4.19642 4.26997 4.33839 4.35539 4.42110 4.46216 4.58616 4.59690 4.67840 4.73277 4.79166 4.82665 4.89217 4.92818 4.96815 4.97746 5.04700 5.10187 5.14556 5.19442 5.21059 5.27586 5.30893 5.33320 5.38466 5.40028 5.47359 5.49449 5.51257 5.60675 5.69481 5.72622 5.82962 6.16466 6.22493 6.26803 6.82943 7.34834 8.89110 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039186 B = 0.002803 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.363144 B = 9985.837284 C =10162.249914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.081 4.081 5 H 0.054 0.946 6 C -0.101 4.101 7 C -0.105 4.105 8 C 0.051 3.949 9 N -0.523 5.523 10 C 0.064 3.936 11 C -0.140 4.140 12 C -0.095 4.095 13 C 0.023 3.977 14 C -0.543 4.543 15 H 0.061 0.939 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.053 3.947 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.052 0.948 43 H -0.015 1.015 44 H -0.014 1.014 45 H 0.264 0.736 46 H 0.064 0.936 47 H 0.023 0.977 48 H 0.069 0.931 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.316 -3.788 -12.867 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.100 4.100 5 H 0.072 0.928 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.078 4.078 9 N -0.245 5.245 10 C -0.064 4.064 11 C -0.179 4.179 12 C -0.133 4.133 13 C -0.014 4.014 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.075 4.075 23 C -0.143 4.143 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.087 0.913 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.478 -3.756 -13.207 25.492 hybrid contribution 1.453 0.051 1.596 2.159 sum -20.025 -3.705 -11.612 23.443 Atomic orbital electron populations 1.21769 0.95472 1.01780 1.01876 1.21601 0.96085 0.96820 1.01913 1.21618 0.93946 0.96938 1.02038 1.20916 0.95343 0.95567 0.98137 0.92778 1.21301 0.95585 0.99738 0.97235 1.21928 0.95248 0.97787 0.99362 1.21948 0.99440 0.88529 0.97891 1.61944 1.08486 1.03910 1.50175 1.22323 0.88372 1.00630 0.95104 1.22175 0.96858 0.99935 0.98901 1.21371 0.95244 0.99384 0.97292 1.19026 0.94595 0.94598 0.93165 1.21771 1.04374 1.31032 1.00937 0.92080 1.26059 1.02610 0.96061 0.95473 1.70115 1.40000 1.41429 1.06083 0.85357 0.78624 0.78317 0.78507 1.18439 1.20273 1.20265 1.21047 0.94519 0.98983 0.92909 1.20620 0.94174 0.97113 1.02363 0.92541 0.92884 0.92447 0.91538 0.92765 0.92146 0.91598 0.91399 0.92451 0.91984 0.91820 0.92532 0.95248 0.90281 0.90291 0.93424 0.93309 0.92909 0.92942 0.99614 0.99581 0.92760 0.91790 0.95825 0.91281 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.13 -1.74 5.73 30.59 0.18 -1.56 16 3 C -0.11 -1.58 4.60 30.59 0.14 -1.44 16 4 C -0.08 -1.44 1.86 -11.10 -0.02 -1.46 16 5 H 0.05 1.11 7.15 -2.38 -0.02 1.10 16 6 C -0.10 -1.79 4.88 30.26 0.15 -1.64 16 7 C -0.11 -2.07 6.14 31.44 0.19 -1.87 16 8 C 0.05 1.24 4.09 87.15 0.36 1.60 16 9 N -0.52 -13.11 4.45 -911.82 -4.06 -17.17 16 10 C 0.06 1.76 5.05 86.30 0.44 2.20 16 11 C -0.14 -4.82 4.66 30.59 0.14 -4.68 16 12 C -0.09 -3.97 5.15 30.59 0.16 -3.82 16 13 C 0.02 1.28 4.97 29.85 0.15 1.43 16 14 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 17 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 18 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 C 0.05 1.26 3.95 83.94 0.33 1.59 16 23 C -0.10 -2.02 4.92 28.92 0.14 -1.88 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.89 6.25 -2.39 -0.01 0.87 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.88 8.06 -2.39 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.04 5.76 -2.39 -0.01 1.03 16 32 H 0.06 1.11 7.39 -2.38 -0.02 1.10 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.47 6.86 -2.39 -0.02 1.45 16 36 H 0.03 0.78 6.51 -2.39 -0.02 0.76 16 37 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 38 H 0.08 2.10 7.93 -2.38 -0.02 2.08 16 39 H 0.05 1.71 6.89 -2.39 -0.02 1.70 16 40 H 0.05 1.75 6.90 -2.39 -0.02 1.73 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 43 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.06 1.56 7.67 -2.39 -0.02 1.54 16 47 H 0.02 0.63 6.76 -2.39 -0.02 0.61 16 48 H 0.07 1.32 7.59 -2.38 -0.02 1.30 16 49 H 0.07 1.25 7.96 -2.39 -0.02 1.23 16 Total: -1.00 -63.90 362.51 2.87 -61.03 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.86 Total: 11.27 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 3.76 Total: -44.07 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -3.78 Total: -75.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.90 2.87 -61.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.441 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds