Wall clock time and date at job start Mon Mar 30 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.57987 * 55.24283 * 4 3 2 6 6 C 1.54526 * 109.57084 * 294.99397 * 4 3 2 7 7 C 1.45871 * 111.67294 * 162.95941 * 6 4 3 8 8 C 1.53985 * 112.67094 * 61.49644 * 7 6 4 9 9 N 1.44299 * 108.31260 * 278.59826 * 8 7 6 10 10 C 1.46897 * 110.99859 * 221.34329 * 9 8 7 11 11 C 1.53002 * 109.47319 * 66.04692 * 10 9 8 12 12 C 1.52997 * 109.47464 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46757 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00255 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99702 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99982 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46969 * 119.99919 * 18 16 14 21 21 H 1.48493 * 109.47407 * 239.99968 * 18 16 14 22 22 C 1.47938 * 113.64334 * 95.39624 * 9 8 7 23 23 C 1.50534 * 109.57516 * 175.62285 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08996 * 109.04407 * 283.52683 * 6 4 3 32 32 H 1.09004 * 109.04024 * 42.47217 * 6 4 3 33 33 H 1.09003 * 108.85038 * 182.32240 * 7 6 4 34 34 H 1.09000 * 108.84521 * 300.68034 * 7 6 4 35 35 H 1.09006 * 109.69195 * 38.30462 * 8 7 6 36 36 H 1.09003 * 109.69559 * 158.88768 * 8 7 6 37 37 H 1.09000 * 109.47673 * 186.04672 * 10 9 8 38 38 H 1.09003 * 109.47033 * 306.04839 * 10 9 8 39 39 H 1.09007 * 109.47096 * 299.99976 * 11 10 9 40 40 H 1.08997 * 109.47265 * 59.99480 * 11 10 9 41 41 H 1.08999 * 109.46923 * 299.99642 * 12 11 10 42 42 H 1.08997 * 109.47566 * 59.99929 * 12 11 10 43 43 H 1.08999 * 109.46801 * 299.99558 * 13 12 11 44 44 H 1.08989 * 109.47235 * 59.99810 * 13 12 11 45 45 H 0.96999 * 119.99808 * 180.02562 * 17 16 14 46 46 H 1.08996 * 108.71612 * 79.13232 * 22 9 8 47 47 H 1.09001 * 108.71313 * 197.27140 * 22 9 8 48 48 H 1.09007 * 108.78896 * 332.45129 * 23 4 3 49 49 H 1.09003 * 108.78909 * 90.66212 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9349 0.8571 -0.8446 6 6 4.0881 0.8271 1.3187 7 6 5.4897 0.4359 1.2168 8 6 6.4192 1.6289 0.9268 9 7 6.3777 1.9023 -0.4894 10 6 7.7185 2.2072 -1.0062 11 6 8.6008 0.9615 -0.9017 12 6 9.9976 1.2792 -1.4393 13 6 10.8796 0.0334 -1.3354 14 6 12.2552 0.3462 -1.8656 15 1 12.4779 1.3346 -2.2397 16 6 13.2294 -0.6295 -1.8731 17 7 12.9580 -1.8332 -1.4180 18 14 14.9343 -0.2420 -2.5309 19 1 14.9817 1.1725 -2.9805 20 1 15.9388 -0.4537 -1.4578 21 1 15.2379 -1.1365 -3.6766 22 6 5.4130 2.9604 -0.8614 23 6 4.0743 2.8567 -0.1089 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9805 1.5592 2.1190 32 1 3.4912 -0.0527 1.5593 33 1 5.7949 -0.0283 2.1546 34 1 5.5940 -0.2945 0.4145 35 1 6.0775 2.5037 1.4801 36 1 7.4384 1.3811 1.2235 37 1 7.6449 2.5136 -2.0496 38 1 8.1587 3.0144 -0.4207 39 1 8.6747 0.6551 0.1418 40 1 8.1607 0.1543 -1.4871 41 1 9.9241 1.5859 -2.4827 42 1 10.4376 2.0862 -0.8536 43 1 10.9531 -0.2737 -0.2921 44 1 10.4395 -0.7733 -1.9214 45 1 13.6435 -2.5194 -1.4229 46 1 5.8596 3.9315 -0.6482 47 1 5.2165 2.8940 -1.9315 48 1 3.3297 3.4558 -0.6330 49 1 4.2036 3.2611 0.8950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385226509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:09 Heat of formation + Delta-G solvation = -46.449413 kcal Electronic energy + Delta-G solvation = -20756.090250 eV Core-core repulsion = 17909.038562 eV Total energy + Delta-G solvation = -2847.051688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.57497 -36.71511 -34.57785 -33.36618 -32.49261 -31.83826 -28.98872 -27.25976 -26.00351 -24.42428 -23.55369 -21.62998 -21.16109 -20.19069 -19.92382 -19.48798 -16.24644 -16.10885 -15.59735 -15.44425 -14.86915 -14.45564 -14.41752 -14.18947 -13.89952 -13.39948 -13.02074 -12.96497 -12.73012 -12.36367 -12.25251 -12.06942 -11.70061 -11.64121 -11.43047 -11.28900 -10.94750 -10.94009 -10.80570 -10.71586 -10.55507 -10.46496 -10.39352 -10.33853 -10.19944 -10.11579 -9.55102 -9.21349 -8.95496 -8.30129 -8.03173 -5.95055 -3.96984 3.33525 3.40732 3.45120 3.97806 4.49009 4.50712 4.57536 4.74192 4.86046 4.98933 5.09970 5.12255 5.16696 5.31959 5.40351 5.41973 5.44445 5.46930 5.57565 5.58265 5.64751 5.66721 5.71299 5.80213 5.81862 5.87627 5.97757 5.97943 6.00522 6.08222 6.15194 6.20512 6.23176 6.30392 6.35899 6.38417 6.51825 6.60630 6.89210 7.03625 7.17416 7.35884 7.42967 7.75045 7.91277 8.06680 8.49589 9.10889 9.66703 11.16348 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036272 B = 0.002780 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.750746 B =10071.049729 C =10396.076521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.081 4.081 5 H 0.082 0.918 6 C -0.109 4.109 7 C -0.116 4.116 8 C 0.060 3.940 9 N -0.547 5.547 10 C 0.061 3.939 11 C -0.113 4.113 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.054 3.946 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.063 3.937 23 C -0.113 4.113 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.259 0.741 46 H 0.027 0.973 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.513 7.591 4.816 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.099 4.099 5 H 0.101 0.899 6 C -0.146 4.146 7 C -0.154 4.154 8 C -0.069 4.069 9 N -0.272 5.272 10 C -0.067 4.067 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.064 4.064 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.600 7.033 4.636 25.059 hybrid contribution 1.285 0.887 0.054 1.563 sum -22.315 7.920 4.690 24.139 Atomic orbital electron populations 1.21783 0.96291 1.01404 1.01520 1.21604 0.95331 0.97213 1.02314 1.21710 0.95333 0.96604 1.01461 1.20922 0.93849 0.96212 0.98931 0.89940 1.20667 0.96720 1.00469 0.96791 1.20479 0.94668 0.98630 1.01616 1.21842 1.00071 0.97035 0.87911 1.60752 1.07896 1.43937 1.14614 1.22207 0.87261 0.97709 0.99480 1.21694 0.95505 0.96550 1.01297 1.21597 0.93347 1.00613 0.99187 1.19088 0.93450 0.92022 0.97023 1.21336 0.96386 0.97157 1.40784 0.92750 1.25041 0.98827 0.95131 0.95612 1.69982 1.33753 1.02798 1.47046 0.86561 0.84588 0.78368 0.78632 1.19790 1.21068 1.21031 1.22345 0.91994 0.92129 0.99963 1.21443 0.95973 0.97334 1.00344 0.93000 0.92944 0.92949 0.91948 0.91716 0.92256 0.92441 0.93088 0.92093 0.92559 0.90932 0.94613 0.90783 0.91307 0.95397 0.92561 0.91755 0.93533 0.93783 0.96769 0.96620 0.93132 0.95426 0.91315 0.91741 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.99 5.73 -26.73 -0.15 -1.14 16 3 C -0.11 -0.90 4.52 -26.73 -0.12 -1.02 16 4 C -0.08 -0.75 1.89 -91.05 -0.17 -0.92 16 5 H 0.08 0.92 7.80 -51.93 -0.40 0.51 16 6 C -0.11 -1.05 4.69 -29.30 -0.14 -1.18 16 7 C -0.12 -1.30 5.37 -29.59 -0.16 -1.46 16 8 C 0.06 0.74 5.10 -4.70 -0.02 0.72 16 9 N -0.55 -7.16 4.01 -234.64 -0.94 -8.10 16 10 C 0.06 0.89 4.81 -3.82 -0.02 0.87 16 11 C -0.11 -1.98 5.17 -26.73 -0.14 -2.12 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.06 0.70 5.38 -2.78 -0.01 0.68 16 23 C -0.11 -1.06 4.83 -27.49 -0.13 -1.19 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 6.27 -51.93 -0.33 0.18 16 29 H 0.06 0.46 7.98 -51.93 -0.41 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.48 7.59 -51.93 -0.39 0.08 16 32 H 0.06 0.55 5.98 -51.93 -0.31 0.24 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.04 0.42 6.79 -51.93 -0.35 0.07 16 36 H 0.07 1.01 5.87 -51.93 -0.30 0.70 16 37 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.06 1.00 6.39 -51.92 -0.33 0.66 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.94 -0.42 0.01 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.03 0.31 8.02 -51.93 -0.42 -0.11 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.53 7.62 -51.93 -0.40 0.13 16 49 H 0.06 0.53 6.66 -51.93 -0.35 0.18 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -29.85 365.21 -10.98 -40.83 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -9.87 Total: -5.13 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -1.39 Total: -23.34 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.20 Total: -34.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.85 -10.98 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.623 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds