Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.57987 * 55.24283 * 4 3 2 6 6 C 1.54526 * 109.57084 * 294.99397 * 4 3 2 7 7 C 1.45871 * 111.67294 * 162.95941 * 6 4 3 8 8 C 1.53985 * 112.67094 * 61.49644 * 7 6 4 9 9 N 1.44299 * 108.31260 * 278.59826 * 8 7 6 10 10 C 1.46897 * 110.99859 * 221.34329 * 9 8 7 11 11 C 1.53002 * 109.47319 * 66.04692 * 10 9 8 12 12 C 1.52997 * 109.47464 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46757 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00255 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99702 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99982 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46969 * 119.99919 * 18 16 14 21 21 H 1.48493 * 109.47407 * 239.99968 * 18 16 14 22 22 C 1.47938 * 113.64334 * 95.39624 * 9 8 7 23 23 C 1.50534 * 109.57516 * 175.62285 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08996 * 109.04407 * 283.52683 * 6 4 3 32 32 H 1.09004 * 109.04024 * 42.47217 * 6 4 3 33 33 H 1.09003 * 108.85038 * 182.32240 * 7 6 4 34 34 H 1.09000 * 108.84521 * 300.68034 * 7 6 4 35 35 H 1.09006 * 109.69195 * 38.30462 * 8 7 6 36 36 H 1.09003 * 109.69559 * 158.88768 * 8 7 6 37 37 H 1.09000 * 109.47673 * 186.04672 * 10 9 8 38 38 H 1.09003 * 109.47033 * 306.04839 * 10 9 8 39 39 H 1.09007 * 109.47096 * 299.99976 * 11 10 9 40 40 H 1.08997 * 109.47265 * 59.99480 * 11 10 9 41 41 H 1.08999 * 109.46923 * 299.99642 * 12 11 10 42 42 H 1.08997 * 109.47566 * 59.99929 * 12 11 10 43 43 H 1.08999 * 109.46801 * 299.99558 * 13 12 11 44 44 H 1.08989 * 109.47235 * 59.99810 * 13 12 11 45 45 H 0.96999 * 119.99808 * 180.02562 * 17 16 14 46 46 H 1.08996 * 108.71612 * 79.13232 * 22 9 8 47 47 H 1.09001 * 108.71313 * 197.27140 * 22 9 8 48 48 H 1.09007 * 108.78896 * 332.45129 * 23 4 3 49 49 H 1.09003 * 108.78909 * 90.66212 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9349 0.8571 -0.8446 6 6 4.0881 0.8271 1.3187 7 6 5.4897 0.4359 1.2168 8 6 6.4192 1.6289 0.9268 9 7 6.3777 1.9023 -0.4894 10 6 7.7185 2.2072 -1.0062 11 6 8.6008 0.9615 -0.9017 12 6 9.9976 1.2792 -1.4393 13 6 10.8796 0.0334 -1.3354 14 6 12.2552 0.3462 -1.8656 15 1 12.4779 1.3346 -2.2397 16 6 13.2294 -0.6295 -1.8731 17 7 12.9580 -1.8332 -1.4180 18 14 14.9343 -0.2420 -2.5309 19 1 14.9817 1.1725 -2.9805 20 1 15.9388 -0.4537 -1.4578 21 1 15.2379 -1.1365 -3.6766 22 6 5.4130 2.9604 -0.8614 23 6 4.0743 2.8567 -0.1089 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9805 1.5592 2.1190 32 1 3.4912 -0.0527 1.5593 33 1 5.7949 -0.0283 2.1546 34 1 5.5940 -0.2945 0.4145 35 1 6.0775 2.5037 1.4801 36 1 7.4384 1.3811 1.2235 37 1 7.6449 2.5136 -2.0496 38 1 8.1587 3.0144 -0.4207 39 1 8.6747 0.6551 0.1418 40 1 8.1607 0.1543 -1.4871 41 1 9.9241 1.5859 -2.4827 42 1 10.4376 2.0862 -0.8536 43 1 10.9531 -0.2737 -0.2921 44 1 10.4395 -0.7733 -1.9214 45 1 13.6435 -2.5194 -1.4229 46 1 5.8596 3.9315 -0.6482 47 1 5.2165 2.8940 -1.9315 48 1 3.3297 3.4558 -0.6330 49 1 4.2036 3.2611 0.8950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385226509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -60.844353 kcal Electronic energy + Delta-G solvation = -20756.714462 eV Core-core repulsion = 17909.038562 eV Total energy + Delta-G solvation = -2847.675900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47958 -37.73176 -36.14246 -34.65716 -33.77483 -33.06326 -30.48240 -28.36127 -27.10941 -25.91541 -24.55231 -22.94130 -22.14929 -21.59209 -21.00280 -20.37887 -18.43285 -17.18437 -16.68295 -16.44685 -16.14001 -16.05576 -15.50403 -15.07070 -14.70499 -14.50975 -14.35329 -14.11897 -13.78804 -13.67574 -13.45359 -13.25637 -12.99871 -12.87917 -12.78752 -12.37235 -12.31712 -12.21120 -12.09720 -11.89858 -11.74690 -11.60585 -11.50818 -11.36602 -11.30923 -11.25110 -11.00918 -10.93575 -10.86370 -10.56258 -9.05840 -8.20153 -6.31663 1.39122 1.39736 1.53284 2.40570 2.95238 3.12432 3.73059 3.86150 4.00207 4.02553 4.15388 4.19417 4.24234 4.33334 4.41060 4.42881 4.55300 4.59181 4.61639 4.71763 4.72131 4.76555 4.82233 4.88599 4.92221 4.98262 5.00521 5.05683 5.07345 5.17750 5.24266 5.25416 5.29285 5.29824 5.35846 5.37278 5.41819 5.47360 5.52436 5.55831 5.61420 5.72700 5.77999 5.86859 6.23807 6.25950 6.42442 6.86083 7.37627 8.92027 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036272 B = 0.002780 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.750746 B =10071.049729 C =10396.076521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.107 4.107 4 C -0.077 4.077 5 H 0.062 0.938 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.060 3.940 9 N -0.556 5.556 10 C 0.071 3.929 11 C -0.101 4.101 12 C -0.096 4.096 13 C 0.024 3.976 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.061 3.939 23 C -0.109 4.109 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.049 0.951 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.264 0.736 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.224 9.204 4.743 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.145 4.145 4 C -0.095 4.095 5 H 0.080 0.920 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.068 4.068 9 N -0.281 5.281 10 C -0.057 4.057 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.065 4.065 23 C -0.146 4.146 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.330 8.658 4.565 26.225 hybrid contribution 1.489 0.335 0.092 1.529 sum -22.841 8.993 4.656 24.985 Atomic orbital electron populations 1.21768 0.95451 1.01703 1.01920 1.21599 0.96080 0.97102 1.01762 1.21651 0.94053 0.96723 1.02034 1.20858 0.94890 0.95913 0.97872 0.91978 1.20639 0.95482 1.01016 0.97277 1.20442 0.95735 0.97739 1.01001 1.21844 0.99463 0.97819 0.87703 1.60710 1.07290 1.45092 1.14981 1.21985 0.87764 0.95819 1.00087 1.21503 0.94117 0.97812 1.00431 1.21399 0.94272 0.97928 0.99841 1.19011 0.94005 0.93668 0.94647 1.21770 0.97618 0.97584 1.41120 0.92188 1.26042 1.03606 0.94833 0.95688 1.70117 1.35462 1.03942 1.48014 0.85367 0.78689 0.78726 0.78070 1.18528 1.20289 1.20280 1.22421 0.92296 0.91476 1.00347 1.21423 0.95276 0.97464 1.00475 0.92441 0.92679 0.92765 0.92884 0.91941 0.91797 0.91651 0.92215 0.91497 0.92181 0.92912 0.93531 0.92406 0.90730 0.94995 0.93055 0.92934 0.93047 0.93242 0.99345 0.99330 0.92774 0.95031 0.91222 0.90112 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.83 5.73 30.59 0.18 -1.65 16 3 C -0.11 -1.49 4.52 30.59 0.14 -1.35 16 4 C -0.08 -1.32 1.89 -11.07 -0.02 -1.34 16 5 H 0.06 1.35 7.80 -2.39 -0.02 1.33 16 6 C -0.11 -1.91 4.69 28.93 0.14 -1.77 16 7 C -0.11 -2.46 5.37 28.74 0.15 -2.31 16 8 C 0.06 1.45 5.10 87.12 0.44 1.90 16 9 N -0.56 -14.12 4.01 -896.26 -3.59 -17.71 16 10 C 0.07 2.03 4.81 86.30 0.42 2.45 16 11 C -0.10 -3.59 5.17 30.59 0.16 -3.44 16 12 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 13 C 0.02 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 17 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 18 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 C 0.06 1.26 5.38 86.41 0.46 1.72 16 23 C -0.11 -1.79 4.83 30.11 0.15 -1.64 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 6.27 -2.39 -0.01 0.90 16 29 H 0.06 0.85 7.98 -2.39 -0.02 0.83 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.98 7.59 -2.39 -0.02 0.97 16 32 H 0.07 1.12 5.98 -2.39 -0.01 1.11 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.05 1.02 6.79 -2.38 -0.02 1.01 16 36 H 0.06 1.58 5.87 -2.39 -0.01 1.57 16 37 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.03 0.89 8.12 -2.39 -0.02 0.88 16 39 H 0.05 1.87 6.39 -2.38 -0.02 1.85 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.03 0.63 8.02 -2.39 -0.02 0.61 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.09 7.62 -2.38 -0.02 1.08 16 49 H 0.06 0.95 6.66 -2.39 -0.02 0.94 16 Total: -1.00 -64.22 365.21 3.50 -60.72 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.85 Total: 10.51 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.93 Total: -42.55 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.31 Total: -75.92 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.22 3.50 -60.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385226509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.123 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds