Wall clock time and date at job start Mon Mar 30 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46866 * 2 1 4 4 C 1.53001 * 109.46958 * 120.00199 * 2 1 3 5 5 H 1.09000 * 109.56875 * 301.15710 * 4 2 1 6 6 C 1.54514 * 109.56876 * 180.91028 * 4 2 1 7 7 C 1.45879 * 111.67343 * 162.94572 * 6 4 2 8 8 C 1.53980 * 112.66308 * 61.49206 * 7 6 4 9 9 N 1.44300 * 108.32070 * 278.60274 * 8 7 6 10 10 C 1.46894 * 111.00356 * 221.34702 * 9 8 7 11 11 C 1.53001 * 109.46813 * 66.05087 * 10 9 8 12 12 C 1.53007 * 109.47314 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47061 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47302 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99307 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00281 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99634 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46989 * 90.00329 * 18 16 14 20 20 H 1.48498 * 109.46661 * 210.00138 * 18 16 14 21 21 H 1.48501 * 109.47232 * 329.99853 * 18 16 14 22 22 C 1.47948 * 113.64930 * 95.39502 * 9 8 7 23 23 C 1.50531 * 109.57130 * 61.52712 * 4 2 1 24 24 H 1.09002 * 109.47468 * 293.39647 * 1 2 3 25 25 H 1.09005 * 109.47111 * 53.39028 * 1 2 3 26 26 H 1.09003 * 109.47360 * 173.39414 * 1 2 3 27 27 H 1.08997 * 109.46686 * 240.00135 * 2 1 3 28 28 H 1.08999 * 109.46699 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47588 * 299.99855 * 3 2 1 30 30 H 1.09000 * 109.46951 * 60.00249 * 3 2 1 31 31 H 1.08998 * 109.04295 * 42.37837 * 6 4 2 32 32 H 1.09003 * 108.98222 * 283.46488 * 6 4 2 33 33 H 1.09007 * 108.84043 * 300.67924 * 7 6 4 34 34 H 1.08993 * 108.84863 * 182.31926 * 7 6 4 35 35 H 1.09008 * 109.69476 * 158.89520 * 8 7 6 36 36 H 1.09000 * 109.72679 * 38.33416 * 8 7 6 37 37 H 1.08997 * 109.47343 * 306.05318 * 10 9 8 38 38 H 1.08999 * 109.47511 * 186.04548 * 10 9 8 39 39 H 1.08995 * 109.47690 * 59.99816 * 11 10 9 40 40 H 1.09009 * 109.47131 * 299.99773 * 11 10 9 41 41 H 1.08996 * 109.46832 * 59.99699 * 12 11 10 42 42 H 1.08999 * 109.46571 * 299.99677 * 12 11 10 43 43 H 1.09009 * 109.47210 * 299.99431 * 13 12 11 44 44 H 1.08995 * 109.47863 * 59.99629 * 13 12 11 45 45 H 0.96991 * 120.00131 * 180.02562 * 17 16 14 46 46 H 1.08996 * 108.71205 * 79.13007 * 22 9 8 47 47 H 1.08999 * 108.71574 * 197.14825 * 22 9 8 48 48 H 1.08995 * 108.79533 * 332.45969 * 23 4 2 49 49 H 1.09006 * 108.78852 * 90.78975 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6607 -0.2209 2.1402 6 6 3.5850 -0.7026 1.2632 7 6 4.1155 -1.0069 2.5876 8 6 3.7169 -2.4110 3.0781 9 7 2.3790 -2.3413 3.6143 10 6 2.2642 -3.1311 4.8476 11 6 3.1278 -2.4983 5.9406 12 6 3.0088 -3.3212 7.2250 13 6 3.8718 -2.6880 8.3182 14 6 3.7542 -3.4982 9.5834 15 1 3.1263 -4.3766 9.6056 16 6 4.4482 -3.1180 10.7126 17 7 5.2124 -2.0481 10.6856 18 14 4.3028 -4.1228 12.2807 19 1 5.3505 -5.1750 12.2932 20 1 4.4802 -3.2335 13.4565 21 1 2.9619 -4.7585 12.3387 22 6 1.3297 -2.7201 2.6426 23 6 1.5705 -2.1514 1.2327 24 1 -0.3634 0.4081 0.9432 25 1 -0.3633 0.6129 -0.8250 26 1 -0.3634 -1.0208 -0.1182 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9314 0.2852 0.9597 32 1 3.9549 -1.4426 0.5534 33 1 3.7410 -0.2673 3.2953 34 1 5.2029 -0.9409 2.5550 35 1 4.4075 -2.7384 3.8554 36 1 3.7425 -3.1130 2.2447 37 1 2.6044 -4.1494 4.6598 38 1 1.2237 -3.1495 5.1718 39 1 2.7877 -1.4799 6.1284 40 1 4.1684 -2.4799 5.6165 41 1 3.3492 -4.3394 7.0369 42 1 1.9683 -3.3400 7.5493 43 1 4.9125 -2.6689 7.9941 44 1 3.5311 -1.6699 8.5061 45 1 5.7008 -1.7809 11.4798 46 1 1.2884 -3.8074 2.5787 47 1 0.3685 -2.3571 3.0065 48 1 0.6405 -2.2093 0.6672 49 1 2.3228 -2.7622 0.7334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385248171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:13 Heat of formation + Delta-G solvation = -55.047610 kcal Electronic energy + Delta-G solvation = -21022.049407 eV Core-core repulsion = 18174.624873 eV Total energy + Delta-G solvation = -2847.424534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61375 -37.98078 -36.19839 -34.60974 -33.84210 -32.37836 -30.10069 -28.39526 -27.17315 -26.10491 -25.51083 -22.89001 -21.90244 -21.61660 -20.97949 -20.21392 -18.42927 -17.28461 -16.68816 -16.46754 -16.09516 -15.71236 -15.37611 -15.28015 -14.70753 -14.48389 -14.37529 -14.18838 -13.68238 -13.52788 -13.40673 -13.16456 -12.93395 -12.83098 -12.71005 -12.57599 -12.33514 -12.23570 -12.17154 -11.92708 -11.80003 -11.63795 -11.55776 -11.33112 -11.29026 -11.22812 -10.98852 -10.94662 -10.75784 -10.55631 -9.05518 -8.19942 -6.31612 1.39032 1.40980 1.52166 2.40661 2.95426 3.12602 3.70729 3.88220 3.97944 4.02585 4.15042 4.18614 4.23308 4.31109 4.40592 4.50328 4.57027 4.59252 4.65904 4.72662 4.77144 4.81682 4.84342 4.86652 4.91922 4.97573 4.97906 5.05185 5.07890 5.19803 5.24835 5.25162 5.28058 5.31512 5.34787 5.37415 5.45640 5.46195 5.52847 5.55753 5.65465 5.75796 5.78045 5.86801 6.24035 6.26051 6.42770 6.85933 7.37685 8.92065 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037751 B = 0.002907 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.520419 B = 9630.250310 C = 9867.752238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.069 4.069 5 H 0.061 0.939 6 C -0.110 4.110 7 C -0.110 4.110 8 C 0.060 3.940 9 N -0.555 5.555 10 C 0.071 3.929 11 C -0.101 4.101 12 C -0.096 4.096 13 C 0.025 3.975 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.062 3.938 23 C -0.113 4.113 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.051 0.949 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.264 0.736 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 2.010 -24.839 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.088 4.088 5 H 0.079 0.921 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.068 4.068 9 N -0.280 5.280 10 C -0.056 4.056 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.064 4.064 23 C -0.150 4.150 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.888 2.572 -24.650 26.009 hybrid contribution 0.451 -1.025 1.067 1.547 sum -7.437 1.547 -23.583 24.776 Atomic orbital electron populations 1.21898 0.95055 1.01928 1.01606 1.21130 0.95810 0.96084 0.97677 1.21914 1.01260 0.95953 1.01513 1.20873 0.94839 0.95257 0.97826 0.92051 1.20688 0.95469 1.01973 0.96599 1.20433 0.99871 0.96685 0.97858 1.21841 0.89517 0.97207 0.98256 1.60710 1.04280 1.57283 1.05764 1.21980 1.00215 0.94058 0.89390 1.21507 0.99240 0.99171 0.93964 1.21398 0.99345 0.98416 0.94263 1.19002 0.93992 0.94813 0.93455 1.21744 1.27536 1.11645 0.97343 0.92197 1.26031 0.94808 0.96343 1.02882 1.70104 1.30587 1.26347 1.30473 0.85427 0.79019 0.78381 0.78102 1.19672 1.20646 1.18679 1.22413 0.94477 0.97469 0.92088 1.21515 1.02410 0.96233 0.94865 0.93382 0.92259 0.92020 0.90997 0.92246 0.92255 0.93481 0.91204 0.92251 0.92938 0.92168 0.92428 0.93565 0.95014 0.90759 0.92939 0.93049 0.93242 0.93068 0.99362 0.99347 0.92761 0.95126 0.91299 0.89656 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.80 71.98 0.63 -1.29 16 2 C -0.09 -1.24 2.48 -10.79 -0.03 -1.27 16 3 C -0.15 -2.09 8.88 71.98 0.64 -1.45 16 4 C -0.07 -1.20 1.47 -11.08 -0.02 -1.22 16 5 H 0.06 1.35 7.80 -2.39 -0.02 1.33 16 6 C -0.11 -1.97 4.67 28.93 0.14 -1.84 16 7 C -0.11 -2.45 5.37 28.74 0.15 -2.30 16 8 C 0.06 1.46 5.10 87.12 0.44 1.91 16 9 N -0.56 -14.16 4.01 -896.24 -3.59 -17.75 16 10 C 0.07 2.04 4.81 86.30 0.42 2.46 16 11 C -0.10 -3.61 5.18 30.60 0.16 -3.45 16 12 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 13 C 0.02 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 18 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.06 1.29 5.38 86.41 0.46 1.75 16 23 C -0.11 -1.87 4.71 30.11 0.14 -1.73 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.06 0.73 6.32 -2.39 -0.02 0.71 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.82 6.07 -2.39 -0.01 0.81 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.17 5.67 -2.39 -0.01 1.15 16 32 H 0.06 0.98 7.58 -2.39 -0.02 0.97 16 33 H 0.05 1.37 8.08 -2.38 -0.02 1.35 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.58 5.87 -2.38 -0.01 1.56 16 36 H 0.05 1.02 6.79 -2.39 -0.02 1.01 16 37 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 38 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.88 6.39 -2.38 -0.02 1.86 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 43 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 44 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.26 15.42 8.31 -92.72 -0.77 14.65 16 46 H 0.03 0.62 8.02 -2.39 -0.02 0.60 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.18 5.62 -2.39 -0.01 1.17 16 49 H 0.06 0.95 6.65 -2.38 -0.02 0.93 16 Total: -1.00 -64.24 360.45 3.73 -60.51 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.86 Total: 10.72 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 4.14 Total: -42.46 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.30 Total: -75.98 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.24 3.73 -60.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385248171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.462 kcal (2) G-P(sol) polarization free energy of solvation -64.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds