Wall clock time and date at job start Mon Mar 30 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46676 * 2 1 4 4 C 1.52992 * 109.46987 * 119.99680 * 2 1 3 5 5 H 1.09008 * 109.47101 * 183.93364 * 4 2 1 6 6 C 1.52998 * 109.47410 * 303.93522 * 4 2 1 7 7 C 1.53005 * 109.47016 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46991 * 299.99902 * 7 6 4 9 9 C 1.52998 * 109.47160 * 60.00186 * 8 7 6 10 10 C 1.53001 * 109.47502 * 299.99977 * 9 8 7 11 11 H 1.09006 * 109.46538 * 300.00288 * 10 9 8 12 12 N 1.46900 * 109.47580 * 179.97438 * 10 9 8 13 13 C 1.46902 * 110.99807 * 86.87909 * 12 10 9 14 14 C 1.53000 * 109.46988 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47426 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47242 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47113 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99709 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99955 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00341 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99513 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47469 * 60.00317 * 21 19 17 23 23 H 1.48508 * 109.46945 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47452 * 299.99585 * 21 19 17 25 25 H 1.09004 * 109.47469 * 299.99908 * 1 2 3 26 26 H 1.09002 * 109.47247 * 59.99967 * 1 2 3 27 27 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47029 * 240.00301 * 2 1 3 29 29 H 1.08998 * 109.47190 * 294.15141 * 3 2 1 30 30 H 1.08996 * 109.47296 * 54.15248 * 3 2 1 31 31 H 1.09002 * 109.46567 * 174.15404 * 3 2 1 32 32 H 1.08995 * 109.47044 * 60.00502 * 6 4 2 33 33 H 1.08997 * 109.47065 * 299.99930 * 6 4 2 34 34 H 1.08999 * 109.46954 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47539 * 59.99835 * 7 6 4 36 36 H 1.09002 * 109.47114 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47416 * 300.00497 * 8 7 6 38 38 H 1.09006 * 109.47459 * 59.99701 * 9 8 7 39 39 H 1.09006 * 109.47329 * 179.97438 * 9 8 7 40 40 H 1.00897 * 110.99617 * 210.83612 * 12 10 9 41 41 H 1.09002 * 109.46866 * 299.99798 * 13 12 10 42 42 H 1.08994 * 109.46985 * 60.00009 * 13 12 10 43 43 H 1.09008 * 109.46713 * 300.00168 * 14 13 12 44 44 H 1.08998 * 109.47091 * 59.99404 * 14 13 12 45 45 H 1.09005 * 109.46894 * 300.00133 * 15 14 13 46 46 H 1.09002 * 109.47094 * 59.99452 * 15 14 13 47 47 H 1.08996 * 109.47290 * 300.00185 * 16 15 14 48 48 H 1.09006 * 109.46980 * 60.00068 * 16 15 14 49 49 H 0.96995 * 120.00541 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2492 5 1 3.1277 -0.6605 1.2852 6 6 1.4507 -0.0593 2.4965 7 6 1.9613 -0.7802 3.7458 8 6 1.5342 -2.2486 3.6976 9 6 2.1234 -2.9104 2.4503 10 6 1.6130 -2.1896 1.2010 11 1 0.5252 -2.2507 1.1653 12 7 2.1792 -2.8247 0.0035 13 6 1.3480 -3.9531 -0.4368 14 6 1.9686 -4.5879 -1.6829 15 6 1.1028 -5.7629 -2.1419 16 6 1.7230 -6.3972 -3.3883 17 6 0.8705 -7.5549 -3.8400 18 1 -0.0240 -7.8126 -3.2924 19 6 1.2330 -8.2856 -4.9516 20 7 2.3225 -7.9721 -5.6180 21 14 0.1766 -9.7210 -5.5109 22 1 -1.1896 -9.2350 -5.8311 23 1 0.7785 -10.3367 -6.7209 24 1 0.1007 -10.7322 -4.4260 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.7646 1.9253 -0.9377 30 1 1.5936 1.9857 0.8330 31 1 3.1249 1.4444 0.1047 32 1 0.3631 -0.1201 2.4606 33 1 1.7554 0.9867 2.5310 34 1 1.5412 -0.3089 4.6343 35 1 3.0490 -0.7192 3.7815 36 1 1.8975 -2.7620 4.5878 37 1 0.4465 -2.3097 3.6618 38 1 3.2112 -2.8494 2.4860 39 1 1.8195 -3.9567 2.4162 40 1 2.2995 -2.1527 -0.7395 41 1 1.2923 -4.6956 0.3593 42 1 0.3454 -3.5960 -0.6715 43 1 2.0248 -3.8456 -2.4791 44 1 2.9713 -4.9450 -1.4477 45 1 1.0462 -6.5053 -1.3457 46 1 0.1003 -5.4053 -2.3771 47 1 1.7793 -5.6546 -4.1842 48 1 2.7256 -6.7547 -3.1534 49 1 2.5778 -8.4863 -6.3997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385366838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:29 Heat of formation + Delta-G solvation = -57.331454 kcal Electronic energy + Delta-G solvation = -20993.596724 eV Core-core repulsion = 18146.073155 eV Total energy + Delta-G solvation = -2847.523569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95959 -36.02434 -35.16056 -33.87474 -32.09253 -29.85430 -29.31317 -27.43600 -27.12841 -24.32708 -23.74892 -21.85086 -21.10570 -20.50656 -19.96535 -18.92592 -16.35559 -16.03255 -15.43994 -15.23808 -14.73070 -14.60232 -14.39708 -14.35350 -13.79751 -13.40604 -13.03834 -12.96707 -12.66422 -12.33979 -12.25558 -12.10158 -11.75504 -11.61251 -11.54504 -11.34421 -11.22241 -11.08527 -10.93567 -10.91512 -10.59027 -10.51852 -10.38175 -10.37704 -10.13940 -9.97769 -9.58361 -9.20875 -8.96680 -8.29993 -8.24841 -5.94767 -3.96971 3.36060 3.40089 3.42774 4.16422 4.44703 4.47929 4.50187 4.59190 4.82931 4.95466 4.98594 5.13207 5.23665 5.27968 5.32413 5.39856 5.40480 5.46104 5.47570 5.50460 5.58566 5.62422 5.67856 5.71861 5.76766 5.86581 5.88059 5.96560 5.98445 6.00831 6.09452 6.14457 6.18212 6.19926 6.22852 6.33766 6.40574 6.57620 6.88076 7.02164 7.14919 7.31531 7.54650 7.74315 7.90985 8.06603 8.49480 9.10418 9.66610 11.16604 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.003012 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.507262 B = 9292.607430 C = 9781.899448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.083 4.083 5 H 0.077 0.923 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.107 4.107 10 C 0.092 3.908 11 H 0.045 0.955 12 N -0.689 5.689 13 C 0.061 3.939 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.339 0.661 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 18.944 17.531 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.102 4.102 5 H 0.095 0.905 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.146 4.146 10 C -0.018 4.018 11 H 0.062 0.938 12 N -0.322 5.322 13 C -0.068 4.068 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.159 0.841 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.856 18.494 17.715 25.624 hybrid contribution -1.307 -0.428 -0.835 1.609 sum -2.163 18.066 16.880 24.820 Atomic orbital electron populations 1.21961 0.95372 1.01886 1.01694 1.21197 0.95932 0.96379 0.98172 1.21848 1.00985 0.95870 1.01576 1.21349 1.00798 0.93775 0.94285 0.90476 1.21653 1.00669 0.99038 0.93839 1.21546 1.00977 0.95647 0.97537 1.21542 1.00577 0.95603 0.98038 1.21528 1.01095 0.99095 0.92851 1.21548 0.96784 0.92300 0.91176 0.93752 1.60579 1.51277 1.12415 1.07923 1.22091 0.93750 0.92892 0.98056 1.21632 1.00301 0.98248 0.95130 1.21585 0.97967 0.95351 0.99777 1.19082 0.96004 0.95063 0.91394 1.21264 1.09314 1.14079 1.11237 0.92846 1.25031 0.95221 0.97609 0.96655 1.69953 1.24053 1.40488 1.19101 0.86675 0.80606 0.82762 0.78043 1.20298 1.21301 1.20256 0.92348 0.92836 0.92653 0.91013 0.92838 0.92624 0.92636 0.91738 0.91810 0.92353 0.92013 0.92088 0.92326 0.91431 0.92057 0.84051 0.91442 0.95812 0.92902 0.91701 0.93499 0.93762 0.96772 0.96631 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.47 37.16 0.31 -1.02 16 2 C -0.10 -0.86 2.56 -90.62 -0.23 -1.09 16 3 C -0.15 -1.11 8.77 37.16 0.33 -0.78 16 4 C -0.08 -0.75 1.63 -90.62 -0.15 -0.90 16 5 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 6 C -0.11 -0.89 4.48 -26.73 -0.12 -1.01 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 8 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 9 C -0.11 -1.14 5.45 -26.73 -0.15 -1.28 16 10 C 0.09 0.99 1.71 -67.71 -0.12 0.87 16 11 H 0.04 0.51 6.17 -51.93 -0.32 0.19 16 12 N -0.69 -8.83 6.31 -106.72 -0.67 -9.50 16 13 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 14 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 15 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 16 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 17 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.46 6.36 -51.93 -0.33 0.13 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.54 6.54 -51.93 -0.34 0.21 16 28 H 0.07 0.70 6.07 -51.93 -0.32 0.38 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 6.83 -51.93 -0.35 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 33 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 40 H 0.34 4.18 6.10 -39.29 -0.24 3.94 16 41 H 0.07 1.01 7.57 -51.93 -0.39 0.62 16 42 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 43 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -29.91 363.50 -10.44 -40.34 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -9.66 Total: -1.74 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -1.29 Total: -24.78 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.06 Total: -36.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.91 -10.44 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.987 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds