Wall clock time and date at job start Mon Mar 30 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46676 * 2 1 4 4 C 1.52992 * 109.46987 * 119.99680 * 2 1 3 5 5 H 1.09008 * 109.47101 * 183.93364 * 4 2 1 6 6 C 1.52998 * 109.47410 * 303.93522 * 4 2 1 7 7 C 1.53005 * 109.47016 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46991 * 299.99902 * 7 6 4 9 9 C 1.52998 * 109.47160 * 60.00186 * 8 7 6 10 10 C 1.53001 * 109.47502 * 299.99977 * 9 8 7 11 11 H 1.09006 * 109.46538 * 300.00288 * 10 9 8 12 12 N 1.46900 * 109.47580 * 179.97438 * 10 9 8 13 13 C 1.46902 * 110.99807 * 86.87909 * 12 10 9 14 14 C 1.53000 * 109.46988 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47426 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47242 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47113 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99709 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99955 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00341 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99513 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47469 * 60.00317 * 21 19 17 23 23 H 1.48508 * 109.46945 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47452 * 299.99585 * 21 19 17 25 25 H 1.09004 * 109.47469 * 299.99908 * 1 2 3 26 26 H 1.09002 * 109.47247 * 59.99967 * 1 2 3 27 27 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47029 * 240.00301 * 2 1 3 29 29 H 1.08998 * 109.47190 * 294.15141 * 3 2 1 30 30 H 1.08996 * 109.47296 * 54.15248 * 3 2 1 31 31 H 1.09002 * 109.46567 * 174.15404 * 3 2 1 32 32 H 1.08995 * 109.47044 * 60.00502 * 6 4 2 33 33 H 1.08997 * 109.47065 * 299.99930 * 6 4 2 34 34 H 1.08999 * 109.46954 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47539 * 59.99835 * 7 6 4 36 36 H 1.09002 * 109.47114 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47416 * 300.00497 * 8 7 6 38 38 H 1.09006 * 109.47459 * 59.99701 * 9 8 7 39 39 H 1.09006 * 109.47329 * 179.97438 * 9 8 7 40 40 H 1.00897 * 110.99617 * 210.83612 * 12 10 9 41 41 H 1.09002 * 109.46866 * 299.99798 * 13 12 10 42 42 H 1.08994 * 109.46985 * 60.00009 * 13 12 10 43 43 H 1.09008 * 109.46713 * 300.00168 * 14 13 12 44 44 H 1.08998 * 109.47091 * 59.99404 * 14 13 12 45 45 H 1.09005 * 109.46894 * 300.00133 * 15 14 13 46 46 H 1.09002 * 109.47094 * 59.99452 * 15 14 13 47 47 H 1.08996 * 109.47290 * 300.00185 * 16 15 14 48 48 H 1.09006 * 109.46980 * 60.00068 * 16 15 14 49 49 H 0.96995 * 120.00541 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2492 5 1 3.1277 -0.6605 1.2852 6 6 1.4507 -0.0593 2.4965 7 6 1.9613 -0.7802 3.7458 8 6 1.5342 -2.2486 3.6976 9 6 2.1234 -2.9104 2.4503 10 6 1.6130 -2.1896 1.2010 11 1 0.5252 -2.2507 1.1653 12 7 2.1792 -2.8247 0.0035 13 6 1.3480 -3.9531 -0.4368 14 6 1.9686 -4.5879 -1.6829 15 6 1.1028 -5.7629 -2.1419 16 6 1.7230 -6.3972 -3.3883 17 6 0.8705 -7.5549 -3.8400 18 1 -0.0240 -7.8126 -3.2924 19 6 1.2330 -8.2856 -4.9516 20 7 2.3225 -7.9721 -5.6180 21 14 0.1766 -9.7210 -5.5109 22 1 -1.1896 -9.2350 -5.8311 23 1 0.7785 -10.3367 -6.7209 24 1 0.1007 -10.7322 -4.4260 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.7646 1.9253 -0.9377 30 1 1.5936 1.9857 0.8330 31 1 3.1249 1.4444 0.1047 32 1 0.3631 -0.1201 2.4606 33 1 1.7554 0.9867 2.5310 34 1 1.5412 -0.3089 4.6343 35 1 3.0490 -0.7192 3.7815 36 1 1.8975 -2.7620 4.5878 37 1 0.4465 -2.3097 3.6618 38 1 3.2112 -2.8494 2.4860 39 1 1.8195 -3.9567 2.4162 40 1 2.2995 -2.1527 -0.7395 41 1 1.2923 -4.6956 0.3593 42 1 0.3454 -3.5960 -0.6715 43 1 2.0248 -3.8456 -2.4791 44 1 2.9713 -4.9450 -1.4477 45 1 1.0462 -6.5053 -1.3457 46 1 0.1003 -5.4053 -2.3771 47 1 1.7793 -5.6546 -4.1842 48 1 2.7256 -6.7547 -3.1534 49 1 2.5778 -8.4863 -6.3997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385366838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:28 Heat of formation + Delta-G solvation = -72.701155 kcal Electronic energy + Delta-G solvation = -20994.263205 eV Core-core repulsion = 18146.073155 eV Total energy + Delta-G solvation = -2848.190049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74904 -37.36718 -35.87490 -35.58404 -33.90934 -30.99029 -30.30736 -28.57518 -28.08598 -26.01552 -24.56972 -23.15447 -22.21614 -21.73372 -21.21472 -19.68455 -18.44014 -17.17577 -16.55902 -16.44317 -16.06657 -15.77656 -15.49672 -15.15963 -14.69941 -14.54255 -14.22648 -14.11803 -13.81600 -13.62172 -13.51207 -13.08707 -12.94154 -12.83000 -12.76237 -12.50075 -12.35487 -12.28170 -12.17295 -12.08386 -11.89368 -11.76105 -11.61766 -11.40047 -11.33169 -11.17388 -11.11363 -10.78218 -10.70188 -10.55762 -9.29744 -8.20342 -6.32217 1.38748 1.42455 1.50419 2.40447 3.12084 3.17286 3.71569 3.74342 3.87847 4.10498 4.15549 4.18018 4.28350 4.29865 4.45511 4.46004 4.49415 4.55186 4.64675 4.65970 4.68598 4.78211 4.80854 4.83293 4.90365 4.97486 5.01433 5.03510 5.08884 5.17260 5.21793 5.22185 5.27000 5.29517 5.33337 5.34428 5.38543 5.41969 5.47943 5.53403 5.54683 5.62928 5.76707 5.85787 6.19635 6.25207 6.52309 6.85015 7.37052 8.91459 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.003012 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.507262 B = 9292.607430 C = 9781.899448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.077 4.077 5 H 0.070 0.930 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.107 4.107 10 C 0.093 3.907 11 H 0.041 0.959 12 N -0.694 5.694 13 C 0.074 3.926 14 C -0.104 4.104 15 C -0.096 4.096 16 C 0.024 3.976 17 C -0.547 4.547 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.342 0.658 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.049 0.951 47 H -0.011 1.011 48 H -0.012 1.012 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 19.632 18.733 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.095 4.095 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.145 4.145 10 C -0.016 4.016 11 H 0.059 0.941 12 N -0.328 5.328 13 C -0.055 4.055 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.013 4.013 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.163 0.837 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.058 19.196 18.935 27.042 hybrid contribution -0.887 -0.629 -1.220 1.635 sum -2.945 18.567 17.715 25.831 Atomic orbital electron populations 1.21939 0.95232 1.01174 1.02311 1.21180 0.95996 0.97047 0.97423 1.21819 1.01050 0.94978 1.02106 1.21284 1.00396 0.92585 0.95271 0.91161 1.21639 1.00638 0.99545 0.93009 1.21542 1.01016 0.94875 0.98070 1.21519 1.00503 0.96275 0.97121 1.21521 1.00651 0.98537 0.93831 1.21597 0.96453 0.93425 0.90170 0.94098 1.60549 1.51117 1.12371 1.08722 1.21840 0.93818 0.93482 0.96373 1.21457 0.99210 0.96995 0.96578 1.21394 0.98333 0.96425 0.97307 1.19006 0.94871 0.94356 0.93066 1.21721 1.09907 1.15035 1.11844 0.92210 1.26031 0.96581 1.00754 0.96653 1.70093 1.25840 1.41930 1.19609 0.85480 0.78845 0.78831 0.77769 1.19074 1.20702 1.19103 0.91220 0.92752 0.93977 0.92335 0.92731 0.91579 0.92583 0.91577 0.90580 0.90912 0.92096 0.91444 0.92198 0.92246 0.93465 0.83738 0.91540 0.95367 0.93001 0.92715 0.93188 0.93209 0.99233 0.99318 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.47 71.98 0.61 -1.80 16 2 C -0.10 -1.59 2.56 -10.79 -0.03 -1.62 16 3 C -0.14 -1.92 8.77 71.98 0.63 -1.29 16 4 C -0.08 -1.28 1.63 -10.80 -0.02 -1.30 16 5 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 6 C -0.11 -1.48 4.48 30.60 0.14 -1.34 16 7 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 8 C -0.12 -1.83 5.92 30.59 0.18 -1.64 16 9 C -0.11 -2.19 5.45 30.59 0.17 -2.02 16 10 C 0.09 1.93 1.71 44.92 0.08 2.01 16 11 H 0.04 0.90 6.17 -2.38 -0.01 0.89 16 12 N -0.69 -17.56 6.31 -491.55 -3.10 -20.67 16 13 C 0.07 2.15 5.48 86.30 0.47 2.62 16 14 C -0.10 -3.72 5.47 30.59 0.17 -3.56 16 15 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 16 C 0.02 1.33 4.97 29.85 0.15 1.48 16 17 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 20 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H 0.07 0.96 6.36 -2.39 -0.02 0.94 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 0.79 6.54 -2.39 -0.02 0.77 16 28 H 0.06 1.11 6.07 -2.39 -0.01 1.10 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.76 6.83 -2.39 -0.02 0.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.89 6.36 -2.39 -0.02 0.87 16 33 H 0.08 0.87 6.67 -2.39 -0.02 0.85 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.05 1.08 7.58 -2.38 -0.02 1.06 16 40 H 0.34 8.34 6.10 -89.70 -0.55 7.79 16 41 H 0.07 1.95 7.57 -2.39 -0.02 1.93 16 42 H 0.03 0.80 8.05 -2.39 -0.02 0.78 16 43 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 48 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 49 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -64.22 363.50 3.11 -61.11 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.33 Total: 16.18 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 3.58 Total: -45.62 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.82 Total: -78.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.22 3.11 -61.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.596 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds