Wall clock time and date at job start Mon Mar 30 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47012 * 119.99701 * 2 1 3 5 5 H 1.08993 * 109.47411 * 300.00187 * 4 2 1 6 6 C 1.53003 * 109.47001 * 60.00309 * 4 2 1 7 7 C 1.52997 * 109.47371 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47434 * 300.00226 * 7 6 4 9 9 C 1.53003 * 109.47027 * 59.99563 * 8 7 6 10 10 C 1.53000 * 109.47012 * 180.02562 * 4 2 1 11 11 H 1.09000 * 109.47284 * 60.00687 * 10 4 2 12 12 N 1.46901 * 109.47187 * 300.00118 * 10 4 2 13 13 C 1.46905 * 110.99870 * 154.99992 * 12 10 4 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.47360 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47393 * 180.02562 * 16 15 14 18 18 H 1.08010 * 119.99765 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00736 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00590 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99710 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47096 * 89.99542 * 21 19 17 23 23 H 1.48493 * 109.47219 * 210.00086 * 21 19 17 24 24 H 1.48504 * 109.46764 * 330.00180 * 21 19 17 25 25 H 1.08997 * 109.47106 * 300.00485 * 1 2 3 26 26 H 1.09007 * 109.47095 * 59.99754 * 1 2 3 27 27 H 1.09000 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47220 * 240.00229 * 2 1 3 29 29 H 1.08998 * 109.47192 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47280 * 299.99622 * 3 2 1 31 31 H 1.09002 * 109.46954 * 60.00066 * 3 2 1 32 32 H 1.08998 * 109.47192 * 299.99849 * 6 4 2 33 33 H 1.09002 * 109.46954 * 59.99641 * 6 4 2 34 34 H 1.09006 * 109.46668 * 59.99772 * 7 6 4 35 35 H 1.08996 * 109.47619 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47486 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.46901 * 299.99962 * 8 7 6 38 38 H 1.09007 * 109.47206 * 180.02562 * 9 8 7 39 39 H 1.08993 * 109.47138 * 60.00363 * 9 8 7 40 40 H 1.00901 * 111.00067 * 278.95167 * 12 10 4 41 41 H 1.09001 * 109.46798 * 300.00327 * 13 12 10 42 42 H 1.08998 * 109.46961 * 60.00043 * 13 12 10 43 43 H 1.09001 * 109.47393 * 299.99719 * 14 13 12 44 44 H 1.08998 * 109.47408 * 60.00073 * 14 13 12 45 45 H 1.09001 * 109.46514 * 300.00105 * 15 14 13 46 46 H 1.08998 * 109.46924 * 59.99625 * 15 14 13 47 47 H 1.09001 * 109.47393 * 299.99567 * 16 15 14 48 48 H 1.08998 * 109.47408 * 59.99921 * 16 15 14 49 49 H 0.97002 * 120.00416 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 2.0404 -2.8852 2.4982 8 6 3.5704 -2.8851 2.4977 9 6 4.0804 -1.4426 2.4977 10 6 3.5700 -0.7206 1.2496 11 1 3.9329 0.3072 1.2499 12 7 4.0601 -1.4128 0.0502 13 6 5.4074 -0.9513 -0.3103 14 6 5.8827 -1.6926 -1.5614 15 6 7.2861 -1.2124 -1.9366 16 6 7.7616 -1.9541 -3.1873 17 6 9.1442 -1.4817 -3.5565 18 1 9.6346 -0.7274 -2.9589 19 6 9.7832 -2.0122 -4.6569 20 7 10.9896 -1.5995 -4.9793 21 14 8.9349 -3.3163 -5.6910 22 1 8.1536 -2.6611 -6.7705 23 1 9.9551 -4.2123 -6.2922 24 1 8.0215 -4.1121 -4.8321 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4400 -2.1638 1.2492 33 1 1.8933 -2.6775 0.3592 34 1 1.6774 -2.3714 3.3884 35 1 1.6768 -3.9127 2.4984 36 1 3.9341 -3.3987 3.3877 37 1 3.9334 -3.3988 1.6075 38 1 5.1704 -1.4426 2.4969 39 1 3.7174 -0.9289 3.3878 40 1 4.0428 -2.4136 0.1777 41 1 5.3831 0.1199 -0.5103 42 1 6.0926 -1.1516 0.5134 43 1 5.9069 -2.7639 -1.3619 44 1 5.1974 -1.4918 -2.3850 45 1 7.2623 -0.1411 -2.1360 46 1 7.9711 -1.4135 -1.1129 47 1 7.7856 -3.0254 -2.9875 48 1 7.0767 -1.7535 -4.0112 49 1 11.4393 -1.9731 -5.7534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385366840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:33 Heat of formation + Delta-G solvation = -53.642476 kcal Electronic energy + Delta-G solvation = -21229.371622 eV Core-core repulsion = 18382.008020 eV Total energy + Delta-G solvation = -2847.363603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00499 -36.00964 -35.08990 -33.70049 -32.06893 -30.20108 -29.53395 -27.60864 -27.20919 -24.20200 -23.20869 -22.31215 -21.27068 -20.04898 -19.96352 -18.97207 -16.64913 -16.34100 -15.71038 -14.84812 -14.79987 -14.51319 -14.15906 -14.03423 -13.60078 -13.53997 -13.38979 -12.85915 -12.63393 -12.40627 -12.32416 -12.26001 -11.90012 -11.69091 -11.49706 -11.38566 -11.28168 -11.19114 -11.06744 -10.75472 -10.65906 -10.53864 -10.42545 -10.13795 -9.95465 -9.83899 -9.64047 -9.41756 -9.11119 -8.49587 -8.25371 -6.00274 -3.97712 3.34145 3.41008 3.45674 4.22090 4.48297 4.49320 4.59045 4.60298 4.89538 4.97123 5.03850 5.19585 5.22570 5.30176 5.32114 5.34248 5.41286 5.46326 5.50652 5.56761 5.58871 5.65450 5.75279 5.77103 5.81156 5.88014 5.89126 5.93773 5.94718 6.02866 6.09710 6.12210 6.17073 6.24112 6.26238 6.38152 6.43389 6.54801 6.71858 6.81682 6.96697 7.20602 7.38570 7.48668 7.52192 7.85289 8.59242 9.05095 9.62877 11.13395 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.003430 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.549976 B = 8162.218793 C = 8481.611078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.066 4.066 5 H 0.063 0.937 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.151 4.151 10 C 0.089 3.911 11 H 0.078 0.922 12 N -0.681 5.681 13 C 0.059 3.941 14 C -0.117 4.117 15 C -0.101 4.101 16 C -0.014 4.014 17 C -0.519 4.519 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.338 0.662 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.013 0.987 48 H 0.011 0.989 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.907 0.474 15.881 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.085 4.085 5 H 0.082 0.918 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.190 4.190 10 C -0.021 4.021 11 H 0.096 0.904 12 N -0.313 5.313 13 C -0.070 4.070 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.088 0.912 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.078 0.878 15.307 26.880 hybrid contribution 0.338 -1.075 0.128 1.134 sum -21.740 -0.198 15.435 26.663 Atomic orbital electron populations 1.21925 0.96269 1.01382 1.01091 1.21024 0.94253 0.95850 0.99197 1.21847 1.01418 0.96181 1.00837 1.21135 0.94084 0.95597 0.97671 0.91839 1.21624 1.00010 0.95632 0.98110 1.21538 0.95417 1.00194 0.98492 1.21523 0.95938 0.96657 1.01722 1.22201 1.00667 0.96553 0.99618 1.21601 0.94779 0.97904 0.87823 0.90359 1.60673 1.24962 1.10330 1.35312 1.22059 0.87905 1.00044 0.96948 1.21655 0.98136 0.99104 0.96642 1.21408 0.93289 1.00026 0.99170 1.19565 0.96679 0.95661 0.93218 1.21199 0.99338 1.23323 1.11860 0.91166 1.25051 0.94738 0.96572 0.97299 1.69921 1.13355 1.43733 1.27551 0.86756 0.79457 0.82222 0.80723 1.20303 1.21472 1.19023 0.93370 0.93128 0.92686 0.89510 0.92346 0.93148 0.93598 0.92091 0.91165 0.92370 0.92285 0.92179 0.91903 0.92032 0.91773 0.84120 0.91357 0.95631 0.92962 0.91726 0.92906 0.93150 0.96827 0.97108 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.84 37.16 0.33 -0.91 16 2 C -0.08 -0.79 2.35 -90.62 -0.21 -1.01 16 3 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 4 C -0.07 -0.58 1.60 -90.62 -0.14 -0.73 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.12 -0.97 4.61 -26.73 -0.12 -1.10 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.12 -1.03 5.67 -26.73 -0.15 -1.18 16 9 C -0.15 -1.38 5.51 -26.75 -0.15 -1.53 16 10 C 0.09 0.87 1.95 -67.73 -0.13 0.74 16 11 H 0.08 0.82 6.09 -51.93 -0.32 0.51 16 12 N -0.68 -7.69 5.00 -106.75 -0.53 -8.23 16 13 C 0.06 0.79 5.48 -3.82 -0.02 0.77 16 14 C -0.12 -1.89 5.47 -26.73 -0.15 -2.03 16 15 C -0.10 -2.02 5.15 -26.73 -0.14 -2.15 16 16 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 17 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 21 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.09 0.98 7.60 -51.93 -0.39 0.58 16 29 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 33 H 0.07 0.66 7.21 -51.93 -0.37 0.29 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.58 6.26 -51.93 -0.32 0.25 16 38 H 0.06 0.62 7.45 -51.92 -0.39 0.23 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.34 3.76 5.56 -39.29 -0.22 3.54 16 41 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.03 0.34 7.43 -51.93 -0.39 -0.04 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 48 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -29.89 359.61 -9.94 -39.83 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -9.67 Total: -1.38 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.26 Total: -25.45 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.24 Total: -35.99 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.89 -9.94 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.810 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds