Wall clock time and date at job start Mon Mar 30 2020 07:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47060 * 2 1 4 4 C 1.53003 * 109.47064 * 119.99703 * 2 1 3 5 5 H 1.09007 * 109.47033 * 54.53954 * 4 2 1 6 6 C 1.53002 * 109.47360 * 294.54555 * 4 2 1 7 7 C 1.52994 * 109.47356 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47060 * 59.99674 * 7 6 4 9 9 C 1.52998 * 109.46972 * 299.99946 * 8 7 6 10 10 C 1.52996 * 109.47380 * 174.54315 * 4 2 1 11 11 H 1.08997 * 109.47400 * 59.99780 * 10 4 2 12 12 N 1.46907 * 109.46842 * 300.00154 * 10 4 2 13 13 C 1.46900 * 110.99752 * 155.00114 * 12 10 4 14 14 C 1.53005 * 109.46752 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46927 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.46964 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47253 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99610 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99897 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47177 * 89.99500 * 21 19 17 23 23 H 1.48500 * 109.47219 * 209.99576 * 21 19 17 24 24 H 1.48504 * 109.47234 * 329.99558 * 21 19 17 25 25 H 1.09000 * 109.47289 * 305.22585 * 1 2 3 26 26 H 1.08997 * 109.46903 * 65.22568 * 1 2 3 27 27 H 1.08998 * 109.47357 * 185.22595 * 1 2 3 28 28 H 1.09000 * 109.47245 * 239.99671 * 2 1 3 29 29 H 1.09003 * 109.47313 * 60.00274 * 3 2 1 30 30 H 1.09008 * 109.46844 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46986 * 299.99780 * 3 2 1 32 32 H 1.09001 * 109.47283 * 59.99636 * 6 4 2 33 33 H 1.09007 * 109.46558 * 299.99691 * 6 4 2 34 34 H 1.08996 * 109.47064 * 299.99936 * 7 6 4 35 35 H 1.08997 * 109.47613 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47170 * 179.97438 * 8 7 6 37 37 H 1.08996 * 109.46968 * 60.00203 * 8 7 6 38 38 H 1.08996 * 109.47483 * 299.99941 * 9 8 7 39 39 H 1.09001 * 109.46954 * 180.02562 * 9 8 7 40 40 H 1.00899 * 110.99852 * 278.95119 * 12 10 4 41 41 H 1.08994 * 109.47047 * 60.00239 * 13 12 10 42 42 H 1.08997 * 109.46858 * 299.99506 * 13 12 10 43 43 H 1.09004 * 109.46937 * 60.00433 * 14 13 12 44 44 H 1.08994 * 109.47492 * 299.99980 * 14 13 12 45 45 H 1.08995 * 109.47011 * 60.00091 * 15 14 13 46 46 H 1.09007 * 109.47077 * 300.00111 * 15 14 13 47 47 H 1.09005 * 109.47364 * 60.00086 * 16 15 14 48 48 H 1.09003 * 109.47375 * 300.00306 * 16 15 14 49 49 H 0.96998 * 120.00590 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5990 -1.7168 1.2996 6 6 1.6450 0.0749 2.4948 7 6 2.1544 -0.6466 3.7441 8 6 3.6783 -0.7671 3.6777 9 6 4.0731 -1.5632 2.4323 10 6 3.5638 -0.8411 1.1827 11 1 4.0048 0.1544 1.1324 12 7 3.9429 -1.6056 -0.0132 13 6 5.3037 -1.2627 -0.4475 14 6 5.6622 -2.0774 -1.6920 15 6 7.0793 -1.7199 -2.1448 16 6 7.4376 -2.5341 -3.3896 17 6 8.8335 -2.1824 -3.8353 18 1 9.4076 -1.4510 -3.2859 19 6 9.3774 -2.7937 -4.9450 20 7 8.6783 -3.6839 -5.6144 21 14 11.1076 -2.3572 -5.4979 22 1 12.0822 -3.2579 -4.8314 23 1 11.2120 -2.5176 -6.9705 24 1 11.4040 -0.9490 -5.1311 25 1 -0.3634 0.5927 0.8395 26 1 -0.3633 0.4306 -0.9331 27 1 -0.3634 -1.0234 0.0936 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 0.5594 0.1603 2.5423 33 1 2.0861 1.0705 2.4445 34 1 1.7132 -1.6420 3.7941 35 1 1.8735 -0.0793 4.6313 36 1 4.0413 -1.2807 4.5679 37 1 4.1196 0.2283 3.6277 38 1 3.6319 -2.5586 2.4823 39 1 5.1587 -1.6494 2.3852 40 1 3.8542 -2.5975 0.1486 41 1 6.0087 -1.4916 0.3516 42 1 5.3531 -0.1995 -0.6822 43 1 4.9573 -1.8489 -2.4914 44 1 5.6129 -3.1406 -1.4570 45 1 7.7845 -1.9480 -1.3457 46 1 7.1282 -0.6566 -2.3801 47 1 6.7323 -2.3056 -4.1887 48 1 7.3885 -3.5974 -3.1548 49 1 9.0610 -4.1142 -6.3949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385366841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:35 Heat of formation + Delta-G solvation = -59.921038 kcal Electronic energy + Delta-G solvation = -20970.988486 eV Core-core repulsion = 18123.352624 eV Total energy + Delta-G solvation = -2847.635862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82452 -36.11819 -35.00803 -33.88835 -32.11153 -29.82303 -29.26564 -27.27251 -27.06016 -24.21813 -23.57576 -21.87379 -21.34795 -20.51231 -19.96113 -18.90939 -16.24182 -15.86636 -15.38533 -15.13954 -14.73529 -14.48071 -14.39921 -14.32540 -13.71356 -13.37514 -13.03741 -12.99040 -12.65985 -12.36487 -12.25536 -11.99759 -11.66729 -11.56375 -11.43632 -11.36460 -11.18723 -10.97500 -10.95600 -10.82418 -10.56482 -10.48548 -10.39543 -10.32987 -10.15511 -10.00757 -9.59146 -9.21331 -8.96282 -8.30471 -8.20126 -5.95343 -3.97474 3.34217 3.40215 3.43872 4.18346 4.46413 4.49756 4.58425 4.77968 4.91778 4.95825 5.06212 5.17593 5.27196 5.28912 5.36245 5.40066 5.43594 5.48133 5.52973 5.60093 5.61175 5.68161 5.81128 5.81655 5.88464 5.90228 5.91317 5.96387 5.97307 6.02147 6.07908 6.17919 6.23545 6.29370 6.30982 6.45068 6.55606 6.56787 6.87588 7.01638 7.13593 7.30185 7.51973 7.74045 7.90415 8.06074 8.49001 9.10132 9.66238 11.16035 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.003007 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.437959 B = 9309.976475 C = 9801.772108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.066 4.066 5 H 0.066 0.934 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.150 4.150 10 C 0.091 3.909 11 H 0.077 0.923 12 N -0.683 5.683 13 C 0.061 3.939 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.338 0.662 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.046 0.954 47 H 0.015 0.985 48 H 0.014 0.986 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 7.209 18.233 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.086 4.086 5 H 0.084 0.916 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.189 4.189 10 C -0.019 4.019 11 H 0.095 0.905 12 N -0.312 5.312 13 C -0.068 4.068 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.156 0.844 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.556 7.540 17.618 25.325 hybrid contribution 1.581 -0.346 0.340 1.654 sum -14.975 7.194 17.957 24.464 Atomic orbital electron populations 1.21891 0.96203 1.01250 1.01136 1.21032 0.94356 0.95991 0.99106 1.21908 1.01200 0.96386 1.00941 1.21105 0.94486 0.98935 0.94024 0.91562 1.21708 1.00575 0.99352 0.93963 1.21550 0.95677 1.00642 0.97867 1.21462 0.96016 1.00313 0.97518 1.22297 1.00940 0.99663 0.96027 1.21651 0.95259 0.97608 0.87423 0.90467 1.60603 1.26312 1.10718 1.33568 1.22070 0.87507 1.00370 0.96838 1.21629 0.98628 0.98786 0.96240 1.21585 0.93208 1.00205 0.99691 1.19087 0.96069 0.94906 0.91515 1.21298 1.00111 1.23082 1.11315 0.92805 1.25032 0.97674 0.95213 0.96627 1.69965 1.37049 1.27455 1.19111 0.86617 0.84963 0.78799 0.77755 1.20721 1.21230 1.19898 0.93156 0.93104 0.93043 0.89299 0.93102 0.92641 0.93243 0.91857 0.91664 0.92204 0.92356 0.92360 0.92112 0.91951 0.92093 0.84445 0.95750 0.91512 0.91729 0.92864 0.93779 0.93520 0.96623 0.96786 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.83 37.16 0.33 -0.95 16 2 C -0.09 -0.85 2.61 -90.62 -0.24 -1.09 16 3 C -0.15 -1.42 8.45 37.16 0.31 -1.11 16 4 C -0.07 -0.62 1.67 -90.62 -0.15 -0.77 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -0.95 4.46 -26.73 -0.12 -1.07 16 7 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 8 C -0.11 -0.96 5.92 -26.73 -0.16 -1.11 16 9 C -0.15 -1.43 5.17 -26.71 -0.14 -1.57 16 10 C 0.09 0.93 1.68 -67.69 -0.11 0.82 16 11 H 0.08 0.87 6.24 -51.93 -0.32 0.54 16 12 N -0.68 -8.25 5.39 -106.70 -0.58 -8.82 16 13 C 0.06 0.86 5.48 -3.82 -0.02 0.84 16 14 C -0.11 -1.98 5.47 -26.73 -0.15 -2.13 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.05 0.40 6.84 -51.93 -0.36 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.07 7.44 -51.93 -0.39 0.68 16 29 H 0.05 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.05 0.59 6.58 -51.92 -0.34 0.24 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 33 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 40 H 0.34 3.96 8.47 -39.29 -0.33 3.63 16 41 H 0.02 0.34 7.44 -51.93 -0.39 -0.04 16 42 H 0.07 0.96 8.05 -51.93 -0.42 0.55 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -29.54 365.98 -10.45 -39.99 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -9.82 Total: -1.79 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -1.29 Total: -25.12 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.16 Total: -35.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.54 -10.45 -39.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.928 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds