Wall clock time and date at job start Mon Mar 30 2020 07:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47093 * 2 1 4 4 H 1.09000 * 109.47529 * 178.31106 * 3 2 1 5 5 N 1.46899 * 109.47184 * 58.31516 * 3 2 1 6 6 C 1.46901 * 111.00487 * 83.47477 * 5 3 2 7 7 C 1.52998 * 109.47777 * 177.79258 * 6 5 3 8 8 C 1.52993 * 109.47270 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46977 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46966 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00142 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99682 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99713 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00344 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46946 * 89.99781 * 14 12 10 16 16 H 1.48504 * 109.46863 * 210.00226 * 14 12 10 17 17 H 1.48505 * 109.46545 * 329.99861 * 14 12 10 18 18 C 1.52993 * 109.47397 * 298.31396 * 3 2 1 19 19 C 1.52998 * 109.47309 * 299.99962 * 18 3 2 20 20 C 1.53005 * 109.47322 * 179.97438 * 19 18 3 21 21 C 1.52997 * 109.46981 * 60.00480 * 20 19 18 22 22 C 1.53006 * 109.46833 * 299.99488 * 21 20 19 23 23 C 1.53003 * 109.47402 * 179.97438 * 18 3 2 24 24 H 1.09000 * 109.47647 * 305.91103 * 1 2 3 25 25 H 1.09004 * 109.47385 * 185.91069 * 1 2 3 26 26 H 1.08997 * 109.47108 * 65.91784 * 1 2 3 27 27 H 1.08992 * 109.46872 * 120.00257 * 2 1 3 28 28 H 1.09001 * 109.46896 * 240.00236 * 2 1 3 29 29 H 1.00899 * 111.00627 * 207.43203 * 5 3 2 30 30 H 1.08998 * 109.46976 * 297.80029 * 6 5 3 31 31 H 1.09004 * 109.46501 * 57.79400 * 6 5 3 32 32 H 1.09002 * 109.47030 * 300.00610 * 7 6 5 33 33 H 1.09001 * 109.46646 * 60.00056 * 7 6 5 34 34 H 1.09001 * 109.46985 * 299.99693 * 8 7 6 35 35 H 1.08989 * 109.47387 * 59.99841 * 8 7 6 36 36 H 1.08998 * 109.47467 * 299.99939 * 9 8 7 37 37 H 1.09004 * 109.47313 * 60.00107 * 9 8 7 38 38 H 0.97001 * 120.00007 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47203 * 59.99919 * 18 3 2 40 40 H 1.09000 * 109.46952 * 300.00110 * 19 18 3 41 41 H 1.08999 * 109.46825 * 60.00098 * 19 18 3 42 42 H 1.09000 * 109.47409 * 300.00090 * 20 19 18 43 43 H 1.08997 * 109.46900 * 179.97438 * 20 19 18 44 44 H 1.08999 * 109.46972 * 180.02562 * 21 20 19 45 45 H 1.09000 * 109.47885 * 59.99494 * 21 20 19 46 46 H 1.09000 * 109.47223 * 300.00185 * 22 21 20 47 47 H 1.08999 * 109.46957 * 179.97438 * 22 21 20 48 48 H 1.08997 * 109.47154 * 299.99905 * 23 18 3 49 49 H 1.09000 * 109.46894 * 59.99869 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4427 0.0303 5 7 1.5173 2.1466 1.1785 6 6 2.3484 1.8831 2.3609 7 6 1.8062 2.6750 3.5524 8 6 2.6722 2.4010 4.7835 9 6 2.1295 3.1924 5.9751 10 6 2.9822 2.9220 7.1880 11 1 3.8264 2.2523 7.1162 12 6 2.6844 3.5296 8.3893 13 7 3.4282 3.2933 9.4478 14 14 1.2237 4.6874 8.5138 15 1 0.0111 3.9160 8.8874 16 1 1.4947 5.7165 9.5497 17 1 1.0045 5.3502 7.2030 18 6 1.5650 2.1514 -1.2698 19 6 2.1093 1.4181 -2.4973 20 6 1.6337 2.1267 -3.7673 21 6 2.1433 3.5693 -3.7676 22 6 1.5989 4.3027 -2.5401 23 6 2.0744 3.5941 -1.2695 24 1 -0.3634 0.6027 0.8323 25 1 -0.3634 -1.0222 0.1058 26 1 -0.3633 0.4193 -0.9382 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.4412 3.1374 1.0036 30 1 2.3249 0.8180 2.5914 31 1 3.3751 2.1885 2.1586 32 1 1.8297 3.7401 3.3217 33 1 0.7795 2.3696 3.7546 34 1 2.6489 1.3359 5.0143 35 1 3.6986 2.7066 4.5810 36 1 2.1523 4.2575 5.7447 37 1 1.1031 2.8864 6.1775 38 1 3.2190 3.7210 10.2929 39 1 0.4754 2.1512 -1.3001 40 1 3.1989 1.4182 -2.4671 41 1 1.7459 0.3904 -2.4974 42 1 0.5442 2.1262 -3.7974 43 1 2.0219 1.6045 -4.6417 44 1 1.8042 4.0742 -4.6721 45 1 3.2329 3.5698 -3.7375 46 1 0.5093 4.3022 -2.5701 47 1 1.9623 5.3303 -2.5400 48 1 1.6862 4.1163 -0.3951 49 1 3.1640 3.5946 -1.2390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385386265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:43 Heat of formation + Delta-G solvation = -56.244595 kcal Electronic energy + Delta-G solvation = -20840.696139 eV Core-core repulsion = 17993.219700 eV Total energy + Delta-G solvation = -2847.476439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71086 -36.82974 -34.91307 -32.98373 -31.75810 -30.90384 -30.53973 -28.39093 -25.58752 -24.24708 -22.89868 -22.50559 -21.14052 -20.27778 -19.99777 -19.29186 -16.69930 -16.43249 -15.77456 -14.93611 -14.76026 -14.51753 -14.22100 -14.10018 -13.99718 -13.81132 -13.39974 -12.79129 -12.65139 -12.51053 -12.38514 -12.19880 -11.77437 -11.67885 -11.58942 -11.39558 -11.29110 -11.13666 -11.00234 -10.90518 -10.70973 -10.57830 -10.39076 -10.22394 -10.07255 -9.83825 -9.64341 -9.41864 -9.11245 -8.49586 -8.32146 -6.00302 -3.97715 3.34124 3.40933 3.45626 4.13124 4.37128 4.46206 4.48352 4.49295 4.85363 4.90476 5.03286 5.12244 5.19104 5.24955 5.27488 5.33433 5.35180 5.36244 5.37506 5.43431 5.52204 5.63121 5.67053 5.73618 5.82862 5.85656 5.86100 5.89461 5.91714 5.99346 6.04034 6.09566 6.11463 6.21126 6.22334 6.27950 6.42781 6.47858 6.71197 6.81019 6.96321 7.19052 7.38342 7.46992 7.51714 7.85213 8.59266 9.05139 9.62818 11.13377 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.003012 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.183959 B = 9292.540966 C = 9711.595225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.091 3.909 4 H 0.039 0.961 5 N -0.686 5.686 6 C 0.060 3.940 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.014 4.014 10 C -0.519 4.519 11 H 0.070 0.930 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.088 4.088 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.120 4.120 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 -2.238 -28.240 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.019 4.019 4 H 0.057 0.943 5 N -0.319 5.319 6 C -0.069 4.069 7 C -0.156 4.156 8 C -0.139 4.139 9 C -0.051 4.051 10 C -0.557 4.557 11 H 0.088 0.912 12 C -0.137 4.137 13 N -0.546 5.546 14 Si 0.709 3.291 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.158 4.158 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.159 0.841 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.121 -2.679 -27.894 28.486 hybrid contribution 0.156 1.140 0.110 1.156 sum -4.965 -1.539 -27.784 28.266 Atomic orbital electron populations 1.21673 0.95355 1.00764 1.02290 1.21540 0.97057 0.95389 1.01135 1.21542 0.96483 0.94427 0.89466 0.94285 1.60580 1.52969 1.14900 1.03423 1.22077 0.93813 1.00855 0.90128 1.21670 1.00576 0.98961 0.94411 1.21406 0.98147 1.00488 0.93856 1.19569 0.96296 0.95317 0.93934 1.21200 1.13825 1.27876 0.92827 0.91153 1.25055 0.96455 0.96439 0.95725 1.69925 1.39455 1.44327 1.00845 0.86753 0.83262 0.81146 0.77978 1.20306 1.21480 1.19010 1.21322 1.01371 0.94200 0.93741 1.21612 1.00598 0.99147 0.93827 1.21525 1.00824 0.95660 0.97597 1.21542 1.00611 0.95754 0.97841 1.21511 1.00787 0.98738 0.94469 1.21666 1.00743 0.95589 0.97806 0.90881 0.93987 0.93480 0.92271 0.92218 0.84126 0.91230 0.95640 0.92908 0.91707 0.92881 0.93115 0.96815 0.97105 0.92823 0.90056 0.92185 0.91501 0.92048 0.92240 0.92306 0.92156 0.91956 0.92144 0.91731 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.35 37.16 0.35 -1.09 16 2 C -0.11 -1.13 5.45 -26.73 -0.15 -1.27 16 3 C 0.09 0.92 1.92 -67.72 -0.13 0.79 16 4 H 0.04 0.43 7.79 -51.93 -0.40 0.02 16 5 N -0.69 -8.05 5.38 -106.73 -0.57 -8.62 16 6 C 0.06 0.83 5.50 -3.82 -0.02 0.80 16 7 C -0.12 -1.92 5.45 -26.74 -0.15 -2.07 16 8 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 14 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 18 C -0.09 -0.75 1.61 -90.62 -0.15 -0.89 16 19 C -0.11 -0.86 4.85 -26.73 -0.13 -0.99 16 20 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 21 C -0.12 -0.83 5.92 -26.73 -0.16 -0.98 16 22 C -0.12 -0.87 5.92 -26.70 -0.16 -1.03 16 23 C -0.12 -1.01 4.97 -26.70 -0.13 -1.14 16 24 H 0.07 0.85 7.37 -51.93 -0.38 0.47 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.43 6.79 -51.93 -0.35 0.08 16 27 H 0.06 0.66 7.44 -51.93 -0.39 0.27 16 28 H 0.06 0.52 6.34 -51.93 -0.33 0.19 16 29 H 0.34 3.80 6.15 -39.29 -0.24 3.56 16 30 H 0.07 0.99 7.42 -51.93 -0.39 0.60 16 31 H 0.03 0.35 8.01 -51.93 -0.42 -0.06 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 1.02 8.14 -51.94 -0.42 0.60 16 36 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 37 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.08 0.75 6.61 -51.93 -0.34 0.41 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.50 6.39 -51.93 -0.33 0.16 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.57 6.21 -51.93 -0.32 0.24 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -30.19 362.19 -10.42 -40.60 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -9.75 Total: -2.01 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.66 Total: -25.23 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.20 Total: -36.42 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.19 -10.42 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385386265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.643 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds