Wall clock time and date at job start Mon Mar 30 2020 07:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47163 * 2 1 4 4 H 1.09000 * 109.46876 * 303.49316 * 3 2 1 5 5 N 1.46903 * 109.46854 * 63.49294 * 3 2 1 6 6 C 1.46902 * 110.99991 * 218.82519 * 5 3 2 7 7 C 1.52994 * 109.47113 * 174.03685 * 6 5 3 8 8 C 1.53001 * 109.46817 * 180.02562 * 7 6 5 9 9 C 1.53009 * 109.47098 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47027 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00331 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99976 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99577 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47440 * 59.99644 * 14 12 10 16 16 H 1.48500 * 109.46730 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46895 * 299.99466 * 14 12 10 18 18 C 1.52996 * 109.46994 * 183.49244 * 3 2 1 19 19 C 1.53006 * 109.47135 * 297.37221 * 18 3 2 20 20 C 1.53006 * 109.46939 * 180.02562 * 19 18 3 21 21 C 1.52994 * 109.47287 * 59.99723 * 20 19 18 22 22 C 1.52999 * 109.47491 * 300.00251 * 21 20 19 23 23 C 1.53004 * 109.46782 * 177.37391 * 18 3 2 24 24 H 1.08999 * 109.47241 * 62.62630 * 1 2 3 25 25 H 1.08998 * 109.47180 * 182.62339 * 1 2 3 26 26 H 1.09003 * 109.46918 * 302.62255 * 1 2 3 27 27 H 1.08999 * 109.47036 * 239.99984 * 2 1 3 28 28 H 1.09006 * 109.47244 * 119.99836 * 2 1 3 29 29 H 1.00903 * 110.99935 * 94.87308 * 5 3 2 30 30 H 1.09004 * 109.46565 * 294.03754 * 6 5 3 31 31 H 1.09004 * 109.47179 * 54.03082 * 6 5 3 32 32 H 1.08997 * 109.47397 * 299.99861 * 7 6 5 33 33 H 1.08996 * 109.47393 * 60.00261 * 7 6 5 34 34 H 1.09000 * 109.47435 * 299.99472 * 8 7 6 35 35 H 1.08997 * 109.47472 * 59.99845 * 8 7 6 36 36 H 1.09000 * 109.46649 * 300.00079 * 9 8 7 37 37 H 1.09004 * 109.46643 * 59.99837 * 9 8 7 38 38 H 0.96998 * 120.00054 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47460 * 57.37103 * 18 3 2 40 40 H 1.08995 * 109.47130 * 299.99812 * 19 18 3 41 41 H 1.08994 * 109.46739 * 60.00078 * 19 18 3 42 42 H 1.08995 * 109.46795 * 299.99697 * 20 19 18 43 43 H 1.09000 * 109.46740 * 180.02562 * 20 19 18 44 44 H 1.08994 * 109.47482 * 180.02562 * 21 20 19 45 45 H 1.09007 * 109.46889 * 59.99987 * 21 20 19 46 46 H 1.09004 * 109.47118 * 300.00210 * 22 21 20 47 47 H 1.08999 * 109.47708 * 179.97438 * 22 21 20 48 48 H 1.08995 * 109.46885 * 299.99572 * 23 18 3 49 49 H 1.08991 * 109.47118 * 60.00302 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6265 1.9741 -0.8570 5 7 1.6205 2.1102 1.2394 6 6 1.2303 3.5027 0.9812 7 6 0.6610 4.1185 2.2608 8 6 0.2541 5.5686 1.9916 9 6 -0.3159 6.1843 3.2711 10 6 -0.7161 7.6128 3.0061 11 1 -0.5774 8.0391 2.0235 12 6 -1.2584 8.3759 4.0184 13 7 -1.4258 7.8573 5.2153 14 14 -1.7552 10.1464 3.6898 15 1 -2.7868 10.1811 2.6223 16 1 -2.3082 10.7440 4.9317 17 1 -0.5658 10.9215 3.2541 18 6 3.5675 1.4434 -0.0879 19 6 4.1498 0.7545 1.1480 20 6 5.6774 0.7560 1.0604 21 6 6.1831 2.1984 0.9946 22 6 5.6008 2.8873 -0.2412 23 6 4.0737 2.8858 -0.1539 24 1 -0.3634 0.4725 -0.9126 25 1 -0.3633 -1.0266 0.0470 26 1 -0.3633 0.5540 0.8656 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.3455 2.0617 1.9396 30 1 2.1036 4.0713 0.6616 31 1 0.4732 3.5285 0.1974 32 1 -0.2122 3.5499 2.5804 33 1 1.4181 4.0927 3.0445 34 1 1.1270 6.1376 1.6718 35 1 -0.5032 5.5941 1.2080 36 1 -1.1890 5.6152 3.5905 37 1 0.4411 6.1589 4.0550 38 1 -1.8077 8.3940 5.9274 39 1 3.8802 0.9072 -0.9838 40 1 3.8372 1.2907 2.0440 41 1 3.7892 -0.2729 1.1950 42 1 5.9904 0.2200 0.1644 43 1 6.0922 0.2649 1.9407 44 1 7.2712 2.1995 0.9318 45 1 5.8700 2.7344 1.8907 46 1 5.9137 2.3513 -1.1372 47 1 5.9607 3.9151 -0.2878 48 1 3.6588 3.3764 -1.0343 49 1 3.7610 3.4219 0.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385386266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:45 Heat of formation + Delta-G solvation = -58.281530 kcal Electronic energy + Delta-G solvation = -21099.930938 eV Core-core repulsion = 18252.366170 eV Total energy + Delta-G solvation = -2847.564767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81820 -36.47811 -34.79685 -32.95012 -31.55763 -30.89906 -30.60071 -27.87256 -25.63380 -23.96500 -23.18250 -22.07366 -21.19623 -20.53328 -20.03317 -19.24096 -16.27244 -16.11039 -15.53236 -15.23410 -14.54914 -14.45292 -14.39197 -14.20154 -14.08791 -13.22256 -13.15393 -12.90147 -12.61760 -12.40409 -12.27130 -11.93119 -11.62352 -11.60524 -11.43407 -11.28234 -11.23695 -10.91587 -10.88433 -10.75535 -10.61942 -10.50468 -10.44254 -10.35340 -10.15985 -10.04438 -9.57476 -9.20454 -8.96471 -8.29430 -8.16962 -5.94541 -3.96664 3.36105 3.40198 3.42842 4.27716 4.41760 4.49921 4.50975 4.56379 4.89365 4.98595 5.07316 5.17268 5.24206 5.31125 5.32470 5.37468 5.40733 5.46297 5.49169 5.52072 5.63543 5.69241 5.78477 5.80960 5.88962 5.92920 5.95781 5.97111 6.03053 6.06866 6.09635 6.14296 6.18404 6.25372 6.28917 6.39890 6.49450 6.58902 6.89445 7.03741 7.15831 7.32885 7.56905 7.74663 7.91512 8.06942 8.49822 9.10725 9.66867 11.16801 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003425 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.185790 B = 8174.245362 C = 8951.019411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.089 3.911 4 H 0.070 0.930 5 N -0.683 5.683 6 C 0.055 3.945 7 C -0.114 4.114 8 C -0.108 4.108 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.053 0.947 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.121 4.121 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.339 0.661 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.129 -16.783 -11.404 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.021 4.021 4 H 0.088 0.912 5 N -0.315 5.315 6 C -0.074 4.074 7 C -0.152 4.152 8 C -0.147 4.147 9 C -0.015 4.015 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.131 4.131 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.412 -16.972 -11.250 23.847 hybrid contribution 0.586 1.478 -0.271 1.613 sum 12.999 -15.494 -11.521 23.276 Atomic orbital electron populations 1.21666 0.95515 1.00648 1.02442 1.21525 0.96518 0.95609 1.01020 1.21652 0.91905 0.95506 0.93063 0.91164 1.60642 1.45008 1.16388 1.09495 1.22246 0.98825 0.87256 0.99065 1.21606 1.00602 0.97182 0.95786 1.21585 0.99421 0.92873 1.00789 1.19084 0.95858 0.94943 0.91664 1.21263 1.40854 0.97328 0.96426 0.92869 1.25031 0.95958 0.98332 0.95183 1.69958 1.45152 1.36694 1.01771 0.86678 0.78864 0.85111 0.77460 1.20270 1.21304 1.20298 1.21791 0.96139 0.96279 0.98869 1.21626 0.95015 1.00763 0.97971 1.21519 0.95830 0.96670 1.01507 1.21546 0.99730 0.96042 0.98549 1.21506 0.95607 1.00388 0.98028 1.21737 0.95473 0.96386 1.02291 0.93711 0.93834 0.91025 0.92761 0.91858 0.84032 0.95063 0.91627 0.91821 0.92971 0.93807 0.93571 0.96648 0.96793 0.93017 0.91109 0.91682 0.91515 0.92287 0.92163 0.92321 0.91878 0.92317 0.92107 0.92117 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.82 37.16 0.36 -1.16 16 2 C -0.11 -1.04 5.23 -26.73 -0.14 -1.18 16 3 C 0.09 0.92 1.97 -67.71 -0.13 0.78 16 4 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 5 N -0.68 -8.27 5.37 -106.72 -0.57 -8.84 16 6 C 0.05 0.77 5.10 -3.83 -0.02 0.75 16 7 C -0.11 -1.98 5.52 -26.73 -0.15 -2.13 16 8 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 11 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 14 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 C -0.11 -1.00 1.98 -90.62 -0.18 -1.18 16 19 C -0.12 -1.00 4.66 -26.72 -0.12 -1.12 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -1.02 5.92 -26.74 -0.16 -1.18 16 22 C -0.12 -1.04 5.92 -26.75 -0.16 -1.19 16 23 C -0.12 -1.19 4.17 -26.75 -0.11 -1.30 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.88 7.63 -51.93 -0.40 0.49 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.61 6.68 -51.93 -0.35 0.26 16 29 H 0.34 4.01 5.79 -39.29 -0.23 3.78 16 30 H 0.03 0.43 5.64 -51.93 -0.29 0.14 16 31 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.62 6.12 -51.93 -0.32 0.30 16 41 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.77 5.79 -51.93 -0.30 0.47 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -29.58 364.58 -10.77 -40.35 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -9.75 Total: -1.31 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -1.65 Total: -25.92 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.16 Total: -35.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.58 -10.77 -40.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385386266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.932 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds