Wall clock time and date at job start Mon Mar 30 2020 07:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47225 * 2 1 4 4 C 1.53006 * 109.47075 * 240.00588 * 2 1 3 5 5 C 1.52992 * 109.47204 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47139 * 60.00097 * 5 4 2 7 7 C 1.53006 * 109.46993 * 300.00032 * 6 5 4 8 8 H 1.08998 * 109.46614 * 300.00021 * 7 6 5 9 9 C 1.53003 * 109.46993 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47071 * 64.99957 * 9 7 6 11 11 N 1.46903 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00195 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47161 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.52994 * 109.47163 * 120.00643 * 2 1 3 25 25 H 1.08999 * 109.46989 * 299.99353 * 1 2 3 26 26 H 1.09002 * 109.47017 * 59.99628 * 1 2 3 27 27 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47149 * 300.00309 * 4 2 1 29 29 H 1.08994 * 109.46993 * 59.99475 * 4 2 1 30 30 H 1.08999 * 109.47308 * 179.97438 * 5 4 2 31 31 H 1.09001 * 109.47483 * 300.00304 * 5 4 2 32 32 H 1.09001 * 109.47605 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47458 * 59.99537 * 6 5 4 34 34 H 1.08995 * 109.47051 * 304.99790 * 9 7 6 35 35 H 1.09003 * 109.46438 * 184.99890 * 9 7 6 36 36 H 1.08995 * 109.47319 * 59.99998 * 10 9 7 37 37 H 1.08993 * 109.46983 * 299.99628 * 10 9 7 38 38 H 1.00899 * 111.00270 * 303.95905 * 11 10 9 39 39 H 1.09001 * 109.46391 * 60.00431 * 12 11 10 40 40 H 1.09002 * 109.47472 * 300.00702 * 12 11 10 41 41 H 1.09001 * 109.46652 * 60.00605 * 13 12 11 42 42 H 1.08992 * 109.47514 * 300.00694 * 13 12 11 43 43 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 44 44 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 45 45 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 46 46 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 47 47 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 48 48 H 1.09001 * 109.47350 * 60.00051 * 24 2 1 49 49 H 1.08999 * 109.47171 * 299.99892 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2486 9 6 4.0816 -1.4412 2.4980 10 6 5.6063 -1.3321 2.5617 11 7 6.0970 -2.0235 3.7614 12 6 7.5605 -1.9399 3.8557 13 6 8.0329 -2.6691 5.1151 14 6 9.5572 -2.5815 5.2135 15 6 10.0297 -3.3112 6.4725 16 6 11.5310 -3.2244 6.5700 17 1 12.0921 -2.7007 5.8101 18 6 12.1884 -3.8126 7.6297 19 7 11.5051 -4.4498 8.5553 20 14 14.0494 -3.7056 7.7500 21 1 14.4597 -2.2801 7.8200 22 1 14.5078 -4.4126 8.9727 23 1 14.6600 -4.3382 6.5534 24 6 2.0400 -0.7214 1.2491 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6766 -1.7488 -1.2495 29 1 1.6766 -0.2073 -2.1392 30 1 3.9333 -1.2347 -2.1395 31 1 3.9330 0.3072 -1.2498 32 1 5.1705 -1.4409 -0.0005 33 1 3.7175 -2.4694 -0.0003 34 1 3.7939 -2.4916 2.4546 35 1 3.6469 -0.9817 3.3858 36 1 5.8940 -0.2817 2.6050 37 1 6.0408 -1.7915 1.6740 38 1 5.6592 -1.6582 4.5938 39 1 7.8620 -0.8937 3.9074 40 1 8.0084 -2.4041 2.9770 41 1 7.7313 -3.7153 5.0637 42 1 7.5851 -2.2046 5.9935 43 1 10.0054 -3.0458 4.3351 44 1 9.8585 -1.5352 5.2650 45 1 9.5816 -2.8472 7.3512 46 1 9.7286 -4.3575 6.4208 47 1 11.9675 -4.8633 9.3010 48 1 1.6767 -1.7490 1.2490 49 1 1.6767 -0.2076 2.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385389923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:29 Heat of formation + Delta-G solvation = -69.234079 kcal Electronic energy + Delta-G solvation = -19798.377058 eV Core-core repulsion = 16950.337353 eV Total energy + Delta-G solvation = -2848.039706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.45170 -36.90266 -34.75833 -33.42874 -32.28578 -31.69626 -29.08868 -27.08191 -26.57996 -24.28627 -22.58894 -22.34318 -21.36603 -20.33562 -20.05624 -19.85519 -16.26485 -16.04058 -15.67333 -15.04505 -14.90879 -14.58250 -14.42089 -14.28611 -14.19026 -13.79533 -13.33207 -12.73005 -12.66547 -12.43245 -12.19599 -12.13765 -11.98107 -11.68424 -11.59814 -11.30511 -11.24525 -11.19174 -11.00333 -10.87938 -10.69242 -10.52214 -10.48508 -10.38943 -10.21523 -10.15166 -9.59036 -9.21855 -8.97616 -8.33475 -8.29222 -5.94950 -3.97155 3.35962 3.40030 3.42700 4.10336 4.34987 4.40635 4.47702 4.51712 4.75154 4.82783 4.96450 5.08644 5.11271 5.19415 5.21552 5.32761 5.33723 5.36984 5.40268 5.47711 5.51789 5.54470 5.58195 5.60692 5.71106 5.74690 5.79863 5.87290 5.92522 5.95643 5.97457 6.00071 6.08163 6.15270 6.20610 6.28014 6.31477 6.55734 6.86803 7.00604 7.10009 7.27847 7.47703 7.73975 7.90450 8.06303 8.49120 9.10138 9.66371 11.16349 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.059780 B = 0.002045 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.268392 B =13686.749094 C =13986.602723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.085 4.085 8 H 0.067 0.933 9 C -0.113 4.113 10 C 0.057 3.943 11 N -0.693 5.693 12 C 0.060 3.940 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.521 4.521 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.108 4.108 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.338 0.662 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 9.275 -18.694 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.104 4.104 8 H 0.085 0.915 9 C -0.151 4.151 10 C -0.072 4.072 11 N -0.324 5.324 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.822 8.551 -18.833 30.067 hybrid contribution 1.195 0.974 0.432 1.601 sum -20.627 9.524 -18.401 29.237 Atomic orbital electron populations 1.21836 0.95416 1.01761 1.01502 1.21141 0.95239 0.99606 0.95159 0.91420 1.21595 0.95641 1.00619 0.97291 1.21544 0.95545 1.00732 0.97992 1.21646 1.00530 0.99387 0.93790 1.21144 0.95152 0.99564 0.94557 0.91453 1.21610 0.94854 1.01404 0.97187 1.22012 0.95042 0.95903 0.94255 1.60508 1.06715 1.60075 1.05085 1.22064 0.86590 0.98353 0.99902 1.21636 0.97697 1.00594 0.95414 1.21592 0.92117 1.00225 1.00797 1.19090 0.95564 0.95406 0.91558 1.21259 0.92512 1.34147 1.07971 0.92834 1.25040 0.98260 0.95424 0.95849 1.69964 1.35458 1.35991 1.12143 0.86662 0.85876 0.78138 0.77335 1.20313 1.21301 1.20269 1.21640 0.94927 1.00736 0.97226 0.92754 0.92883 0.92728 0.92031 0.92345 0.92134 0.92169 0.91735 0.91864 0.91053 0.92189 0.95785 0.91011 0.84462 0.95718 0.91384 0.91672 0.92793 0.93462 0.93713 0.96742 0.96591 0.93014 0.91881 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.61 2.72 -90.62 -0.25 -0.85 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.74 5.20 -26.73 -0.14 -0.88 16 5 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 6 C -0.12 -0.90 4.96 -26.73 -0.13 -1.03 16 7 C -0.09 -0.66 2.19 -90.59 -0.20 -0.86 16 8 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 9 C -0.11 -1.02 4.94 -26.73 -0.13 -1.15 16 10 C 0.06 0.61 5.44 -3.82 -0.02 0.59 16 11 N -0.69 -9.01 6.50 -113.78 -0.74 -9.75 16 12 C 0.06 0.88 5.69 -3.83 -0.02 0.86 16 13 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 16 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.11 -0.77 4.49 -26.71 -0.12 -0.89 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 38 H 0.34 4.12 8.73 -39.29 -0.34 3.78 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -30.06 376.74 -11.30 -41.35 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -10.29 Total: -3.60 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -1.66 Total: -23.93 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.00 Total: -36.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.06 -11.30 -41.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.880 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds