Wall clock time and date at job start Mon Mar 30 2020 07:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47225 * 2 1 4 4 C 1.53006 * 109.47075 * 240.00588 * 2 1 3 5 5 C 1.52992 * 109.47204 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47139 * 60.00097 * 5 4 2 7 7 C 1.53006 * 109.46993 * 300.00032 * 6 5 4 8 8 H 1.08998 * 109.46614 * 300.00021 * 7 6 5 9 9 C 1.53003 * 109.46993 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47071 * 64.99957 * 9 7 6 11 11 N 1.46903 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00195 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47161 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.52994 * 109.47163 * 120.00643 * 2 1 3 25 25 H 1.08999 * 109.46989 * 299.99353 * 1 2 3 26 26 H 1.09002 * 109.47017 * 59.99628 * 1 2 3 27 27 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47149 * 300.00309 * 4 2 1 29 29 H 1.08994 * 109.46993 * 59.99475 * 4 2 1 30 30 H 1.08999 * 109.47308 * 179.97438 * 5 4 2 31 31 H 1.09001 * 109.47483 * 300.00304 * 5 4 2 32 32 H 1.09001 * 109.47605 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47458 * 59.99537 * 6 5 4 34 34 H 1.08995 * 109.47051 * 304.99790 * 9 7 6 35 35 H 1.09003 * 109.46438 * 184.99890 * 9 7 6 36 36 H 1.08995 * 109.47319 * 59.99998 * 10 9 7 37 37 H 1.08993 * 109.46983 * 299.99628 * 10 9 7 38 38 H 1.00899 * 111.00270 * 303.95905 * 11 10 9 39 39 H 1.09001 * 109.46391 * 60.00431 * 12 11 10 40 40 H 1.09002 * 109.47472 * 300.00702 * 12 11 10 41 41 H 1.09001 * 109.46652 * 60.00605 * 13 12 11 42 42 H 1.08992 * 109.47514 * 300.00694 * 13 12 11 43 43 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 44 44 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 45 45 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 46 46 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 47 47 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 48 48 H 1.09001 * 109.47350 * 60.00051 * 24 2 1 49 49 H 1.08999 * 109.47171 * 299.99892 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2486 9 6 4.0816 -1.4412 2.4980 10 6 5.6063 -1.3321 2.5617 11 7 6.0970 -2.0235 3.7614 12 6 7.5605 -1.9399 3.8557 13 6 8.0329 -2.6691 5.1151 14 6 9.5572 -2.5815 5.2135 15 6 10.0297 -3.3112 6.4725 16 6 11.5310 -3.2244 6.5700 17 1 12.0921 -2.7007 5.8101 18 6 12.1884 -3.8126 7.6297 19 7 11.5051 -4.4498 8.5553 20 14 14.0494 -3.7056 7.7500 21 1 14.4597 -2.2801 7.8200 22 1 14.5078 -4.4126 8.9727 23 1 14.6600 -4.3382 6.5534 24 6 2.0400 -0.7214 1.2491 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6766 -1.7488 -1.2495 29 1 1.6766 -0.2073 -2.1392 30 1 3.9333 -1.2347 -2.1395 31 1 3.9330 0.3072 -1.2498 32 1 5.1705 -1.4409 -0.0005 33 1 3.7175 -2.4694 -0.0003 34 1 3.7939 -2.4916 2.4546 35 1 3.6469 -0.9817 3.3858 36 1 5.8940 -0.2817 2.6050 37 1 6.0408 -1.7915 1.6740 38 1 5.6592 -1.6582 4.5938 39 1 7.8620 -0.8937 3.9074 40 1 8.0084 -2.4041 2.9770 41 1 7.7313 -3.7153 5.0637 42 1 7.5851 -2.2046 5.9935 43 1 10.0054 -3.0458 4.3351 44 1 9.8585 -1.5352 5.2650 45 1 9.5816 -2.8472 7.3512 46 1 9.7286 -4.3575 6.4208 47 1 11.9675 -4.8633 9.3010 48 1 1.6767 -1.7490 1.2490 49 1 1.6767 -0.2076 2.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385389923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:28 Heat of formation + Delta-G solvation = -84.307731 kcal Electronic energy + Delta-G solvation = -19799.030701 eV Core-core repulsion = 16950.337353 eV Total energy + Delta-G solvation = -2848.693348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05735 -38.02250 -36.22218 -34.79869 -33.61071 -32.60427 -30.48715 -28.32786 -27.17061 -25.96298 -23.59503 -23.03212 -22.68410 -21.76049 -20.87628 -20.62602 -18.43073 -17.17854 -16.55087 -16.30186 -16.04573 -15.72962 -15.34664 -15.21302 -15.02765 -14.61213 -14.44258 -14.13936 -13.84609 -13.64307 -13.23445 -13.07623 -12.96226 -12.78879 -12.73412 -12.60517 -12.40596 -12.22570 -12.12618 -12.04038 -11.90599 -11.80823 -11.54994 -11.36642 -11.31748 -11.27691 -11.06131 -10.77952 -10.72373 -10.55039 -9.36392 -8.19749 -6.31500 1.39295 1.42942 1.50966 2.40935 3.12601 3.17296 3.77246 3.78212 3.87818 4.07623 4.11998 4.21841 4.24088 4.35971 4.45187 4.47211 4.56417 4.57552 4.62210 4.65111 4.73763 4.75355 4.80901 4.82789 4.84422 4.92231 5.01827 5.02819 5.11208 5.16300 5.19609 5.22668 5.24090 5.28241 5.34319 5.35498 5.39614 5.44693 5.50597 5.52509 5.54581 5.68097 5.77459 5.86476 6.11086 6.25623 6.47809 6.85712 7.37634 8.91894 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.059780 B = 0.002045 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.268392 B =13686.749094 C =13986.602723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.080 4.080 8 H 0.067 0.933 9 C -0.105 4.105 10 C 0.060 3.940 11 N -0.700 5.700 12 C 0.071 3.929 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.022 3.978 16 C -0.547 4.547 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.266 1.266 24 C -0.105 4.105 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.343 0.657 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.050 0.950 45 H -0.010 1.010 46 H -0.011 1.011 47 H 0.264 0.736 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.744 10.291 -19.871 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.099 4.099 8 H 0.086 0.914 9 C -0.143 4.143 10 C -0.069 4.069 11 N -0.332 5.332 12 C -0.058 4.058 13 C -0.143 4.143 14 C -0.136 4.136 15 C -0.015 4.015 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.143 4.143 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.007 0.993 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.726 9.577 -20.026 31.061 hybrid contribution 1.118 0.637 0.815 1.523 sum -20.607 10.214 -19.211 29.968 Atomic orbital electron populations 1.21820 0.94840 1.01842 1.01869 1.21131 0.95723 0.99393 0.94795 0.91505 1.21586 0.95268 1.00577 0.97574 1.21535 0.95878 1.00649 0.97631 1.21629 1.00178 0.99233 0.94249 1.21090 0.95622 0.99270 0.93904 0.91447 1.21538 0.93634 1.01115 0.98015 1.22042 0.96034 0.95775 0.93074 1.60467 1.05584 1.60923 1.06190 1.21837 0.87842 0.98116 0.98014 1.21465 0.95130 1.00523 0.97219 1.21405 0.94601 0.99596 0.97955 1.19026 0.94890 0.94261 0.93310 1.21720 0.93837 1.34457 1.08445 0.92174 1.26044 1.04002 0.94768 0.95318 1.70105 1.37792 1.36726 1.12787 0.85466 0.78951 0.78708 0.77712 1.19110 1.20734 1.19133 1.21613 0.94319 1.00657 0.97703 0.92608 0.92329 0.92788 0.92263 0.91663 0.91825 0.92087 0.92273 0.92368 0.91856 0.91861 0.95371 0.91188 0.83911 0.95066 0.91297 0.92699 0.92819 0.93107 0.93107 0.99186 0.99259 0.92766 0.92237 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.09 -1.07 2.72 -10.79 -0.03 -1.10 16 3 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.11 -1.30 5.20 30.59 0.16 -1.14 16 5 C -0.12 -1.50 5.92 30.59 0.18 -1.31 16 6 C -0.12 -1.67 4.96 30.60 0.15 -1.51 16 7 C -0.08 -1.14 2.19 -10.77 -0.02 -1.17 16 8 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 9 C -0.11 -1.77 4.94 30.59 0.15 -1.62 16 10 C 0.06 1.20 5.44 86.30 0.47 1.67 16 11 N -0.70 -17.34 6.50 -513.90 -3.34 -20.68 16 12 C 0.07 2.01 5.69 86.30 0.49 2.50 16 13 C -0.11 -3.70 5.47 30.59 0.17 -3.53 16 14 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -58.28 13.29 21.45 0.28 -57.99 16 20 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.11 -1.37 4.49 30.61 0.14 -1.23 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 1.45 6.56 -2.39 -0.02 1.43 16 38 H 0.34 7.93 8.73 -89.70 -0.78 7.15 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -63.86 376.74 2.56 -61.30 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.07 Total: 13.82 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.52 Total: -43.57 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.06 Total: -78.67 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.86 2.56 -61.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.005 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds