Wall clock time and date at job start Mon Mar 30 2020 07:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 5 5 C 1.53006 * 109.47164 * 60.00174 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47596 * 64.99349 * 9 7 6 11 11 N 1.46893 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47092 * 180.02562 * 12 11 10 14 14 C 1.53009 * 109.46823 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46903 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47115 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00094 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00153 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47175 * 120.00012 * 20 18 16 23 23 H 1.48506 * 109.46497 * 239.99688 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 27 27 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 300.00226 * 4 2 1 30 30 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 31 31 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 34 34 H 1.08998 * 109.46991 * 184.99937 * 9 7 6 35 35 H 1.09008 * 109.46864 * 304.99696 * 9 7 6 36 36 H 1.08994 * 109.46948 * 300.00334 * 10 9 7 37 37 H 1.09005 * 109.46227 * 60.00291 * 10 9 7 38 38 H 1.00899 * 111.00110 * 56.05077 * 11 10 9 39 39 H 1.08999 * 109.46892 * 299.99910 * 12 11 10 40 40 H 1.09000 * 109.46990 * 60.00340 * 12 11 10 41 41 H 1.08999 * 109.46748 * 299.99471 * 13 12 11 42 42 H 1.09000 * 109.47356 * 60.00036 * 13 12 11 43 43 H 1.08994 * 109.47147 * 299.99797 * 14 13 12 44 44 H 1.09000 * 109.47111 * 59.99903 * 14 13 12 45 45 H 1.09007 * 109.47402 * 300.00425 * 15 14 13 46 46 H 1.09003 * 109.46819 * 59.99718 * 15 14 13 47 47 H 0.97001 * 120.00568 * 180.02562 * 19 18 16 48 48 H 1.08992 * 109.47554 * 59.99639 * 24 7 6 49 49 H 1.09004 * 109.47108 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1638 1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5301 -2.1637 -1.2492 8 1 0.4401 -2.1637 -1.2493 9 6 2.0396 -2.8854 -2.4984 10 6 1.4291 -4.2869 -2.5625 11 7 1.9179 -4.9794 -3.7622 12 6 1.3508 -6.3312 -3.8575 13 6 1.8823 -7.0197 -5.1163 14 6 1.2922 -8.4279 -5.2151 15 6 1.8231 -9.1161 -6.4742 16 6 1.2424 -10.5034 -6.5712 17 1 0.5623 -10.8585 -5.8111 18 6 1.5794 -11.3192 -7.6303 19 7 2.4072 -10.8867 -8.5562 20 14 0.8590 -13.0385 -7.7509 21 1 -0.0382 -13.2816 -6.5929 22 1 0.0850 -13.1636 -9.0122 23 1 1.9580 -14.0373 -7.7434 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1300 -0.7208 1.2495 29 1 1.6766 -0.2074 2.1392 30 1 0.4400 -2.1637 1.2493 31 1 1.8930 -2.6774 2.1395 32 1 1.6763 -3.9126 -0.0002 33 1 3.1300 -2.8850 0.0001 34 1 1.7513 -2.3225 -3.3861 35 1 3.1259 -2.9640 -2.4549 36 1 1.7174 -4.8497 -1.6748 37 1 0.3428 -4.2082 -2.6061 38 1 2.9263 -5.0081 -3.7776 39 1 1.6387 -6.9086 -2.9790 40 1 0.2640 -6.2664 -3.9097 41 1 1.5948 -6.4424 -5.9950 42 1 2.9691 -7.0844 -5.0637 43 1 1.5800 -9.0049 -4.3363 44 1 0.2054 -8.3635 -5.2675 45 1 1.5350 -8.5389 -7.3528 46 1 2.9100 -9.1804 -6.4221 47 1 2.6440 -11.4605 -9.3016 48 1 3.1300 -0.7212 -1.2492 49 1 1.6772 -0.2076 -2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385389925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:31 Heat of formation + Delta-G solvation = -64.895988 kcal Electronic energy + Delta-G solvation = -19971.015872 eV Core-core repulsion = 17123.164280 eV Total energy + Delta-G solvation = -2847.851592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73031 -36.91873 -34.71221 -33.27360 -31.97991 -31.66288 -29.04174 -27.17024 -26.86171 -24.29967 -22.87586 -22.43528 -21.45298 -20.70317 -19.89933 -18.90418 -16.23660 -16.06980 -16.00236 -15.18917 -14.73816 -14.51096 -14.50887 -14.29213 -14.16353 -13.74203 -13.36237 -12.92694 -12.60977 -12.42928 -12.21517 -12.09090 -11.87198 -11.65904 -11.48595 -11.40596 -11.33102 -11.21085 -11.02607 -10.91185 -10.53565 -10.48438 -10.42713 -10.39690 -10.21492 -10.11069 -9.59584 -9.22055 -8.95869 -8.32346 -8.29566 -5.95520 -3.97569 3.33282 3.40422 3.44916 4.12292 4.36641 4.39629 4.47602 4.51453 4.76913 4.83090 4.99828 5.04957 5.11607 5.16406 5.19003 5.34756 5.35672 5.38880 5.40022 5.49020 5.53459 5.54938 5.58559 5.65088 5.69014 5.72466 5.82296 5.84802 5.92969 5.95710 5.98668 6.03406 6.07262 6.17930 6.21662 6.27706 6.31493 6.55661 6.86745 7.00597 7.10082 7.27849 7.47850 7.74236 7.90180 8.05935 8.48875 9.10229 9.66136 11.15869 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.055130 B = 0.002102 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.770824 B =13316.042778 C =13489.151576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.086 4.086 8 H 0.073 0.927 9 C -0.113 4.113 10 C 0.057 3.943 11 N -0.693 5.693 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.338 0.662 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.014 0.986 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 22.714 19.532 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.105 4.105 8 H 0.091 0.909 9 C -0.151 4.151 10 C -0.072 4.072 11 N -0.324 5.324 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.146 4.146 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.361 22.935 18.961 29.789 hybrid contribution 0.186 -1.469 0.531 1.573 sum -1.175 21.466 19.493 29.020 Atomic orbital electron populations 1.21947 0.95369 1.02204 1.01336 1.21096 0.95958 0.98917 0.95102 0.91548 1.21561 1.00450 0.95781 0.97379 1.21575 1.01002 0.95533 0.97824 1.21650 1.00678 0.99024 0.94038 1.21167 1.00651 0.94440 0.94282 0.90860 1.21616 1.00230 0.95470 0.97756 1.22008 1.00101 0.94119 0.90964 1.60503 1.13176 1.18971 1.39748 1.22064 0.99746 0.87261 0.97841 1.21640 1.00013 0.97123 0.96569 1.21591 0.99371 0.93122 1.00630 1.19102 0.96233 0.94678 0.91668 1.21334 1.27138 0.99288 1.07953 0.92722 1.25045 0.95288 0.98447 0.95860 1.69978 1.34784 1.36624 1.12176 0.86553 0.78961 0.84661 0.77921 1.19777 1.21025 1.21062 1.21596 1.00499 0.95146 0.97337 0.91924 0.93067 0.92833 0.92153 0.92328 0.91748 0.92320 0.91843 0.92141 0.91099 0.92224 0.95384 0.91399 0.84454 0.95719 0.91389 0.91677 0.92798 0.93711 0.93465 0.96589 0.96736 0.93120 0.92070 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.50 37.16 0.32 -0.65 16 2 C -0.09 -0.60 3.19 -90.62 -0.29 -0.89 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.11 -0.73 5.45 -26.73 -0.15 -0.88 16 5 C -0.12 -0.83 5.65 -26.73 -0.15 -0.98 16 6 C -0.12 -0.88 4.96 -26.73 -0.13 -1.01 16 7 C -0.09 -0.66 1.91 -90.62 -0.17 -0.84 16 8 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 9 C -0.11 -1.01 4.94 -26.73 -0.13 -1.15 16 10 C 0.06 0.61 5.44 -3.83 -0.02 0.59 16 11 N -0.69 -9.00 6.50 -113.78 -0.74 -9.74 16 12 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 13 C -0.12 -2.04 5.48 -26.72 -0.15 -2.19 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 20 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.11 -0.77 4.73 -26.73 -0.13 -0.89 16 25 H 0.06 0.42 4.81 -51.93 -0.25 0.17 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.03 0.30 6.56 -51.93 -0.34 -0.05 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.34 4.12 8.73 -39.29 -0.34 3.78 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -30.11 369.70 -11.10 -41.21 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -9.94 Total: -3.27 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.71 Total: -24.01 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.00 Total: -36.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.11 -11.10 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.682 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds