Wall clock time and date at job start Mon Mar 30 2020 07:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 5 5 C 1.53006 * 109.47164 * 60.00174 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47596 * 64.99349 * 9 7 6 11 11 N 1.46893 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47092 * 180.02562 * 12 11 10 14 14 C 1.53009 * 109.46823 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46903 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47115 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00094 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00153 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46977 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47175 * 120.00012 * 20 18 16 23 23 H 1.48506 * 109.46497 * 239.99688 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 27 27 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47140 * 300.00226 * 4 2 1 30 30 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 31 31 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 34 34 H 1.08998 * 109.46991 * 184.99937 * 9 7 6 35 35 H 1.09008 * 109.46864 * 304.99696 * 9 7 6 36 36 H 1.08994 * 109.46948 * 300.00334 * 10 9 7 37 37 H 1.09005 * 109.46227 * 60.00291 * 10 9 7 38 38 H 1.00899 * 111.00110 * 56.05077 * 11 10 9 39 39 H 1.08999 * 109.46892 * 299.99910 * 12 11 10 40 40 H 1.09000 * 109.46990 * 60.00340 * 12 11 10 41 41 H 1.08999 * 109.46748 * 299.99471 * 13 12 11 42 42 H 1.09000 * 109.47356 * 60.00036 * 13 12 11 43 43 H 1.08994 * 109.47147 * 299.99797 * 14 13 12 44 44 H 1.09000 * 109.47111 * 59.99903 * 14 13 12 45 45 H 1.09007 * 109.47402 * 300.00425 * 15 14 13 46 46 H 1.09003 * 109.46819 * 59.99718 * 15 14 13 47 47 H 0.97001 * 120.00568 * 180.02562 * 19 18 16 48 48 H 1.08992 * 109.47554 * 59.99639 * 24 7 6 49 49 H 1.09004 * 109.47108 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1638 1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5301 -2.1637 -1.2492 8 1 0.4401 -2.1637 -1.2493 9 6 2.0396 -2.8854 -2.4984 10 6 1.4291 -4.2869 -2.5625 11 7 1.9179 -4.9794 -3.7622 12 6 1.3508 -6.3312 -3.8575 13 6 1.8823 -7.0197 -5.1163 14 6 1.2922 -8.4279 -5.2151 15 6 1.8231 -9.1161 -6.4742 16 6 1.2424 -10.5034 -6.5712 17 1 0.5623 -10.8585 -5.8111 18 6 1.5794 -11.3192 -7.6303 19 7 2.4072 -10.8867 -8.5562 20 14 0.8590 -13.0385 -7.7509 21 1 -0.0382 -13.2816 -6.5929 22 1 0.0850 -13.1636 -9.0122 23 1 1.9580 -14.0373 -7.7434 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1300 -0.7208 1.2495 29 1 1.6766 -0.2074 2.1392 30 1 0.4400 -2.1637 1.2493 31 1 1.8930 -2.6774 2.1395 32 1 1.6763 -3.9126 -0.0002 33 1 3.1300 -2.8850 0.0001 34 1 1.7513 -2.3225 -3.3861 35 1 3.1259 -2.9640 -2.4549 36 1 1.7174 -4.8497 -1.6748 37 1 0.3428 -4.2082 -2.6061 38 1 2.9263 -5.0081 -3.7776 39 1 1.6387 -6.9086 -2.9790 40 1 0.2640 -6.2664 -3.9097 41 1 1.5948 -6.4424 -5.9950 42 1 2.9691 -7.0844 -5.0637 43 1 1.5800 -9.0049 -4.3363 44 1 0.2054 -8.3635 -5.2675 45 1 1.5350 -8.5389 -7.3528 46 1 2.9100 -9.1804 -6.4221 47 1 2.6440 -11.4605 -9.3016 48 1 3.1300 -0.7212 -1.2492 49 1 1.6772 -0.2076 -2.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385389925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:30 Heat of formation + Delta-G solvation = -80.240387 kcal Electronic energy + Delta-G solvation = -19971.681255 eV Core-core repulsion = 17123.164280 eV Total energy + Delta-G solvation = -2848.516975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31952 -38.04266 -36.21776 -34.72700 -33.42335 -32.33466 -30.45902 -28.27339 -27.57083 -25.96628 -23.73866 -23.18420 -22.77570 -21.85854 -21.28056 -19.45053 -18.43989 -17.13130 -16.69937 -16.51423 -15.98589 -15.80292 -15.36518 -15.27074 -14.82074 -14.61287 -14.44233 -14.29135 -13.73137 -13.65204 -13.42712 -13.15488 -12.93332 -12.82825 -12.62762 -12.43264 -12.37698 -12.23763 -12.12776 -12.02934 -12.00755 -11.83969 -11.57783 -11.37209 -11.30978 -11.10155 -10.98638 -10.78558 -10.67366 -10.56512 -9.33874 -8.20376 -6.31926 1.39143 1.39778 1.53375 2.40510 3.12140 3.18327 3.78162 3.81520 3.87430 4.04534 4.14552 4.22720 4.23829 4.40707 4.45897 4.50513 4.52709 4.56865 4.60989 4.62814 4.72389 4.76288 4.80989 4.84287 4.87728 4.92276 5.00571 5.03943 5.13266 5.16753 5.20781 5.21669 5.24602 5.28441 5.33717 5.35735 5.39992 5.46340 5.50380 5.54799 5.57399 5.70344 5.77358 5.86402 6.11525 6.25423 6.47971 6.85768 7.37339 8.91721 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.055130 B = 0.002102 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.770824 B =13316.042778 C =13489.151576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.081 4.081 8 H 0.071 0.929 9 C -0.105 4.105 10 C 0.060 3.940 11 N -0.701 5.701 12 C 0.071 3.929 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.022 3.978 16 C -0.544 4.544 17 H 0.060 0.940 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.107 4.107 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.343 0.657 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.050 0.950 45 H -0.011 1.011 46 H -0.010 1.010 47 H 0.264 0.736 48 H 0.060 0.940 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 22.770 20.936 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.100 4.100 8 H 0.089 0.911 9 C -0.143 4.143 10 C -0.069 4.069 11 N -0.332 5.332 12 C -0.058 4.058 13 C -0.143 4.143 14 C -0.135 4.135 15 C -0.015 4.015 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.007 0.993 46 H 0.008 0.992 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.003 23.008 20.381 30.802 hybrid contribution 0.414 -1.449 0.074 1.509 sum -1.589 21.559 20.455 29.761 Atomic orbital electron populations 1.21936 0.95242 1.02004 1.01581 1.21098 0.96041 0.99085 0.94783 0.91090 1.21554 1.00417 0.95502 0.97566 1.21566 1.00996 0.95763 0.97506 1.21625 1.00516 0.98779 0.94308 1.21104 1.00450 0.94712 0.93697 0.91075 1.21544 1.00212 0.94443 0.98125 1.22035 0.99971 0.94763 0.90122 1.60462 1.13607 1.17891 1.41230 1.21837 0.99651 0.88108 0.96217 1.21468 0.99842 0.95110 0.97922 1.21403 0.99453 0.94789 0.97891 1.19035 0.94733 0.94417 0.93333 1.21773 1.27516 1.00508 1.08397 0.92185 1.26048 0.95558 1.03277 0.95341 1.70111 1.35997 1.38520 1.12849 0.85360 0.78356 0.78720 0.78364 1.18533 1.20295 1.20272 1.21575 1.00429 0.94716 0.97699 0.92323 0.92531 0.92916 0.92198 0.91690 0.91744 0.92010 0.92381 0.92336 0.91827 0.92046 0.94838 0.91683 0.83916 0.95046 0.91315 0.92708 0.92827 0.93104 0.93117 0.99258 0.99180 0.92762 0.92147 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.50 71.98 0.61 -1.09 16 2 C -0.09 -1.06 3.19 -10.79 -0.03 -1.09 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.26 5.45 30.60 0.17 -1.10 16 5 C -0.12 -1.47 5.65 30.60 0.17 -1.29 16 6 C -0.11 -1.58 4.96 30.59 0.15 -1.43 16 7 C -0.08 -1.14 1.91 -10.79 -0.02 -1.16 16 8 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 9 C -0.11 -1.77 4.94 30.59 0.15 -1.62 16 10 C 0.06 1.20 5.44 86.30 0.47 1.67 16 11 N -0.70 -17.32 6.50 -513.90 -3.34 -20.66 16 12 C 0.07 2.00 5.69 86.30 0.49 2.49 16 13 C -0.11 -3.69 5.48 30.60 0.17 -3.53 16 14 C -0.10 -4.12 5.15 30.60 0.16 -3.96 16 15 C 0.02 1.20 4.97 29.85 0.15 1.35 16 16 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.29 5.46 84.66 0.46 0.18 16 19 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 20 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C -0.11 -1.38 4.73 30.59 0.14 -1.24 16 25 H 0.06 0.71 4.81 -2.39 -0.01 0.70 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.86 6.56 -2.39 -0.02 0.85 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.03 0.65 6.56 -2.39 -0.02 0.63 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.34 7.94 8.73 -89.69 -0.78 7.15 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 45 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -63.93 369.70 2.53 -61.41 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.08 Total: 13.67 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 3.47 Total: -43.57 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.06 Total: -78.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.93 2.53 -61.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385389925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.832 kcal (2) G-P(sol) polarization free energy of solvation -63.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds