Wall clock time and date at job start Mon Mar 30 2020 06:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47474 * 2 1 4 4 C 1.53003 * 109.47172 * 120.00171 * 2 1 3 5 5 C 1.52994 * 109.47183 * 175.00139 * 4 2 1 6 6 H 1.08999 * 115.56362 * 330.68525 * 5 4 2 7 7 C 1.53080 * 117.51488 * 116.39007 * 5 4 2 8 8 C 1.53003 * 117.49958 * 185.00012 * 5 4 2 9 9 H 1.08999 * 117.50391 * 144.99723 * 8 5 4 10 10 C 1.53002 * 117.49565 * 359.97438 * 8 5 4 11 11 N 1.46900 * 109.47312 * 175.08933 * 10 8 5 12 12 C 1.46896 * 111.00713 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47500 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47482 * 300.00262 * 13 12 11 15 15 C 1.52999 * 109.46961 * 60.00622 * 13 12 11 16 16 C 1.53006 * 109.47223 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47180 * 180.02562 * 16 13 12 18 18 H 1.07995 * 119.99918 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99755 * 180.02562 * 17 16 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46616 * 119.99875 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00029 * 21 19 17 25 25 H 1.08995 * 109.47563 * 299.99915 * 1 2 3 26 26 H 1.09005 * 109.46921 * 59.99892 * 1 2 3 27 27 H 1.09004 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47149 * 240.00058 * 2 1 3 29 29 H 1.08994 * 109.47509 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46915 * 300.00360 * 3 2 1 31 31 H 1.09007 * 109.47072 * 59.99478 * 3 2 1 32 32 H 1.08997 * 109.46992 * 54.99692 * 4 2 1 33 33 H 1.09000 * 109.46692 * 294.99953 * 4 2 1 34 34 H 1.09003 * 117.50677 * 0.02562 * 7 5 4 35 35 H 1.08993 * 117.51511 * 214.94988 * 7 5 4 36 36 H 1.09000 * 109.47297 * 55.08819 * 10 8 5 37 37 H 1.09001 * 109.47200 * 295.08707 * 10 8 5 38 38 H 1.00907 * 111.00253 * 56.04488 * 11 10 8 39 39 H 1.09001 * 109.46885 * 59.99661 * 12 11 10 40 40 H 1.08996 * 109.46969 * 300.00582 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 43 43 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 44 44 H 1.09002 * 109.46716 * 299.99630 * 15 13 12 45 45 H 1.09000 * 109.47486 * 59.99547 * 15 13 12 46 46 H 1.09001 * 109.47362 * 180.02562 * 15 13 12 47 47 H 1.09000 * 109.47050 * 300.00346 * 16 13 12 48 48 H 1.09001 * 109.47002 * 60.00080 * 16 13 12 49 49 H 0.97001 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 1 3.9929 -0.8802 0.1868 7 6 4.3702 -0.1013 2.2660 8 6 4.2607 -1.6272 2.2937 9 1 5.1465 -2.2004 2.0200 10 6 3.3786 -2.2522 3.3764 11 7 4.2081 -3.0671 4.2740 12 6 3.3932 -3.6838 5.3291 13 6 4.2899 -4.5230 6.2414 14 6 4.9726 -5.6177 5.4188 15 6 5.3530 -3.6252 6.8775 16 6 3.4411 -5.1649 7.3407 17 6 4.3245 -5.9911 8.2397 18 1 5.3852 -6.0525 8.0460 19 6 3.7784 -6.6693 9.3087 20 7 2.4867 -6.5948 9.5442 21 14 4.8734 -7.6939 10.4226 22 1 6.2777 -7.6130 9.9467 23 1 4.7912 -7.1742 11.8113 24 1 4.4217 -9.1081 10.3957 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.8136 0.4565 3.0191 35 1 5.3279 0.3292 1.9740 36 1 2.6216 -2.8823 2.9094 37 1 2.8915 -1.4627 3.9488 38 1 4.9577 -2.5198 4.6700 39 1 2.6360 -4.3238 4.8760 40 1 2.9065 -2.9040 5.9148 41 1 5.5774 -5.1600 4.6359 42 1 4.2151 -6.2573 4.9657 43 1 5.6118 -6.2153 6.0687 44 1 5.9578 -3.1676 6.0946 45 1 4.8667 -2.8454 7.4636 46 1 5.9922 -4.2231 7.5271 47 1 2.9551 -4.3848 7.9267 48 1 2.6834 -5.8044 6.8879 49 1 2.1025 -7.0722 10.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387732899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:29 Heat of formation + Delta-G solvation = -21.194272 kcal Electronic energy + Delta-G solvation = -20625.952448 eV Core-core repulsion = 17779.995904 eV Total energy + Delta-G solvation = -2845.956543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.95194 -37.42039 -35.60178 -33.64072 -32.01367 -27.83502 -27.41561 -27.15264 -26.37957 -26.26531 -24.20022 -22.10718 -21.55190 -20.69058 -19.48907 -17.74153 -16.23218 -16.09998 -15.35795 -15.08425 -14.64368 -14.49306 -13.97517 -13.94547 -13.51174 -13.18153 -13.02493 -12.60897 -12.48597 -12.42540 -12.17162 -11.98276 -11.79568 -11.69363 -11.27699 -11.18509 -11.04382 -10.94632 -10.84874 -10.79731 -10.72899 -10.47203 -10.24111 -10.09542 -9.91110 -9.79110 -9.63949 -8.97888 -8.78717 -8.29925 -8.03004 -5.94232 -3.94083 3.33830 3.41588 3.45255 3.66086 4.35456 4.41432 4.51709 4.66818 4.71932 4.84888 4.96411 5.12448 5.30583 5.37326 5.39934 5.41679 5.48351 5.52086 5.58613 5.64143 5.68543 5.71144 5.77450 5.80203 5.83616 5.94429 5.96247 6.02761 6.06490 6.09856 6.19273 6.25462 6.30721 6.38914 6.55279 6.70341 6.83170 6.86673 7.24514 7.28013 7.29920 7.46399 7.72065 7.76191 7.89025 8.06498 8.51162 9.11623 9.68624 11.17555 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002879 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.769008 B = 9722.953244 C =10121.055448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.144 4.144 6 H 0.101 0.899 7 C -0.181 4.181 8 C -0.143 4.143 9 H 0.110 0.890 10 C 0.090 3.910 11 N -0.685 5.685 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.338 0.662 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 14.264 -18.085 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.123 4.123 5 C -0.162 4.162 6 H 0.119 0.881 7 C -0.218 4.218 8 C -0.161 4.161 9 H 0.128 0.872 10 C -0.039 4.039 11 N -0.317 5.317 12 C -0.059 4.059 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.028 13.650 -18.365 22.882 hybrid contribution 0.262 0.196 1.315 1.355 sum 0.290 13.846 -17.051 21.966 Atomic orbital electron populations 1.21854 0.95391 1.01784 1.01616 1.21110 0.95444 0.96420 0.98289 1.21836 1.01302 0.95861 1.01265 1.21236 0.92772 1.00527 0.97746 1.22372 0.94396 1.04792 0.94667 0.88068 1.23190 1.01648 0.94966 1.01981 1.22450 1.01760 0.92967 0.98967 0.87150 1.21451 0.94738 0.94891 0.92853 1.60556 1.13256 1.36189 1.21705 1.22096 0.95642 0.96807 0.91318 1.20618 0.95468 0.94561 0.95186 1.21596 0.99720 0.97650 0.98340 1.21770 0.98710 0.98993 0.99153 1.19136 0.94472 0.95125 0.91743 1.21282 0.94427 1.28063 1.10549 0.92233 1.25024 0.94876 0.96961 0.97828 1.69978 1.10777 1.43361 1.29688 0.86606 0.80949 0.80180 0.80699 1.19772 1.21216 1.21161 0.92727 0.92877 0.92637 0.91345 0.92392 0.93220 0.92899 0.91428 0.91847 0.89115 0.89201 0.91029 0.95726 0.84283 0.91672 0.96015 0.93887 0.94211 0.92730 0.94781 0.94160 0.91738 0.96944 0.96687 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.15 0.34 -0.75 16 2 C -0.09 -0.72 2.88 -90.62 -0.26 -0.98 16 3 C -0.15 -1.05 9.01 37.16 0.33 -0.72 16 4 C -0.09 -0.75 4.04 -26.73 -0.11 -0.86 16 5 C -0.14 -1.31 4.73 -90.58 -0.43 -1.74 16 6 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 7 C -0.18 -1.70 9.83 -26.69 -0.26 -1.96 16 8 C -0.14 -1.54 5.95 -90.61 -0.54 -2.08 16 9 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 10 C 0.09 1.14 5.05 -3.82 -0.02 1.12 16 11 N -0.69 -10.21 5.71 -113.79 -0.65 -10.86 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.22 16 13 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 14 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 15 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 16 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 17 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 18 H 0.06 1.60 5.68 -52.49 -0.30 1.31 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 33 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 34 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.94 7.60 -51.93 -0.39 0.54 16 37 H 0.02 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.34 4.88 6.77 -39.29 -0.27 4.61 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 44 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -28.69 375.37 -10.07 -38.77 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -9.86 Total: 0.23 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.93 Total: -24.18 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.09 Total: -37.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.69 -10.07 -38.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.573 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds