Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47474 * 2 1 4 4 C 1.53003 * 109.47172 * 120.00171 * 2 1 3 5 5 C 1.52994 * 109.47183 * 175.00139 * 4 2 1 6 6 H 1.08999 * 115.56362 * 330.68525 * 5 4 2 7 7 C 1.53080 * 117.51488 * 116.39007 * 5 4 2 8 8 C 1.53003 * 117.49958 * 185.00012 * 5 4 2 9 9 H 1.08999 * 117.50391 * 144.99723 * 8 5 4 10 10 C 1.53002 * 117.49565 * 359.97438 * 8 5 4 11 11 N 1.46900 * 109.47312 * 175.08933 * 10 8 5 12 12 C 1.46896 * 111.00713 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47500 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47482 * 300.00262 * 13 12 11 15 15 C 1.52999 * 109.46961 * 60.00622 * 13 12 11 16 16 C 1.53006 * 109.47223 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47180 * 180.02562 * 16 13 12 18 18 H 1.07995 * 119.99918 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99755 * 180.02562 * 17 16 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46616 * 119.99875 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00029 * 21 19 17 25 25 H 1.08995 * 109.47563 * 299.99915 * 1 2 3 26 26 H 1.09005 * 109.46921 * 59.99892 * 1 2 3 27 27 H 1.09004 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47149 * 240.00058 * 2 1 3 29 29 H 1.08994 * 109.47509 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46915 * 300.00360 * 3 2 1 31 31 H 1.09007 * 109.47072 * 59.99478 * 3 2 1 32 32 H 1.08997 * 109.46992 * 54.99692 * 4 2 1 33 33 H 1.09000 * 109.46692 * 294.99953 * 4 2 1 34 34 H 1.09003 * 117.50677 * 0.02562 * 7 5 4 35 35 H 1.08993 * 117.51511 * 214.94988 * 7 5 4 36 36 H 1.09000 * 109.47297 * 55.08819 * 10 8 5 37 37 H 1.09001 * 109.47200 * 295.08707 * 10 8 5 38 38 H 1.00907 * 111.00253 * 56.04488 * 11 10 8 39 39 H 1.09001 * 109.46885 * 59.99661 * 12 11 10 40 40 H 1.08996 * 109.46969 * 300.00582 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 43 43 H 1.09004 * 109.47261 * 179.97438 * 14 13 12 44 44 H 1.09002 * 109.46716 * 299.99630 * 15 13 12 45 45 H 1.09000 * 109.47486 * 59.99547 * 15 13 12 46 46 H 1.09001 * 109.47362 * 180.02562 * 15 13 12 47 47 H 1.09000 * 109.47050 * 300.00346 * 16 13 12 48 48 H 1.09001 * 109.47002 * 60.00080 * 16 13 12 49 49 H 0.97001 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 1 3.9929 -0.8802 0.1868 7 6 4.3702 -0.1013 2.2660 8 6 4.2607 -1.6272 2.2937 9 1 5.1465 -2.2004 2.0200 10 6 3.3786 -2.2522 3.3764 11 7 4.2081 -3.0671 4.2740 12 6 3.3932 -3.6838 5.3291 13 6 4.2899 -4.5230 6.2414 14 6 4.9726 -5.6177 5.4188 15 6 5.3530 -3.6252 6.8775 16 6 3.4411 -5.1649 7.3407 17 6 4.3245 -5.9911 8.2397 18 1 5.3852 -6.0525 8.0460 19 6 3.7784 -6.6693 9.3087 20 7 2.4867 -6.5948 9.5442 21 14 4.8734 -7.6939 10.4226 22 1 6.2777 -7.6130 9.9467 23 1 4.7912 -7.1742 11.8113 24 1 4.4217 -9.1081 10.3957 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.8136 0.4565 3.0191 35 1 5.3279 0.3292 1.9740 36 1 2.6216 -2.8823 2.9094 37 1 2.8915 -1.4627 3.9488 38 1 4.9577 -2.5198 4.6700 39 1 2.6360 -4.3238 4.8760 40 1 2.9065 -2.9040 5.9148 41 1 5.5774 -5.1600 4.6359 42 1 4.2151 -6.2573 4.9657 43 1 5.6118 -6.2153 6.0687 44 1 5.9578 -3.1676 6.0946 45 1 4.8667 -2.8454 7.4636 46 1 5.9922 -4.2231 7.5271 47 1 2.9551 -4.3848 7.9267 48 1 2.6834 -5.8044 6.8879 49 1 2.1025 -7.0722 10.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387732899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = -34.962671 kcal Electronic energy + Delta-G solvation = -20626.549490 eV Core-core repulsion = 17779.995904 eV Total energy + Delta-G solvation = -2846.553586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85320 -38.86895 -36.43119 -35.15319 -33.87406 -29.25781 -28.43971 -27.99462 -27.88988 -27.63503 -25.82553 -23.82193 -22.34298 -21.37928 -20.35599 -19.35031 -18.33491 -17.13918 -16.58009 -16.21438 -15.97777 -15.55633 -15.43251 -14.85983 -14.77803 -14.46691 -14.04051 -14.00925 -13.85881 -13.60322 -13.42824 -13.13134 -12.86160 -12.82979 -12.67197 -12.47912 -12.35789 -12.27029 -12.16270 -12.13218 -11.88215 -11.80428 -11.65440 -11.47128 -11.38244 -10.89464 -10.80204 -10.64981 -10.51471 -10.51256 -9.28966 -8.14145 -6.21126 1.40272 1.41148 1.53552 2.43761 2.86188 3.19807 3.27986 3.70356 3.94393 3.99892 4.11647 4.16328 4.21064 4.24586 4.36020 4.38809 4.48605 4.63189 4.66672 4.76979 4.80323 4.82371 4.87223 4.88891 4.90926 4.96422 4.97970 5.03798 5.08506 5.11917 5.20377 5.21484 5.22214 5.33121 5.37580 5.44148 5.48068 5.51777 5.53916 5.56519 5.58521 5.66241 5.87320 5.92831 6.12057 6.37253 6.55803 6.94205 7.46218 8.98564 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002879 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.769008 B = 9722.953244 C =10121.055448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.133 4.133 6 H 0.112 0.888 7 C -0.172 4.172 8 C -0.154 4.154 9 H 0.108 0.892 10 C 0.094 3.906 11 N -0.681 5.681 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.107 4.107 15 C -0.122 4.122 16 C 0.039 3.961 17 C -0.512 4.512 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.344 0.656 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.035 0.965 46 H 0.047 0.953 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 15.148 -19.314 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.122 4.122 5 C -0.152 4.152 6 H 0.130 0.870 7 C -0.209 4.209 8 C -0.172 4.172 9 H 0.126 0.874 10 C -0.035 4.035 11 N -0.313 5.313 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.164 4.164 15 C -0.179 4.179 16 C 0.001 3.999 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.184 1.184 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.696 14.546 -19.611 24.475 hybrid contribution -0.303 -0.049 1.658 1.686 sum 1.393 14.496 -17.953 23.117 Atomic orbital electron populations 1.21857 0.95233 1.01694 1.01893 1.21095 0.95594 0.96650 0.97711 1.21815 1.01309 0.95446 1.01480 1.21223 0.92715 1.00115 0.98159 1.22418 0.94421 1.03504 0.94810 0.87024 1.23224 1.02205 0.93703 1.01771 1.22308 1.01760 0.93819 0.99326 0.87364 1.21431 0.94773 0.94456 0.92853 1.60492 1.13193 1.37005 1.20594 1.21803 0.95113 0.96277 0.91525 1.20484 0.95518 0.95276 0.94216 1.21500 0.99322 0.97133 0.98435 1.21684 0.98150 0.98342 0.99759 1.19025 0.94215 0.93848 0.92807 1.21645 0.94938 1.27779 1.10655 0.91537 1.25942 0.96231 0.98428 0.99664 1.70118 1.12734 1.44637 1.30544 0.85504 0.79482 0.78242 0.78493 1.18403 1.20799 1.20842 0.93053 0.92013 0.92936 0.90976 0.92316 0.92454 0.93270 0.92281 0.92510 0.89357 0.87945 0.91709 0.95815 0.83621 0.92733 0.96688 0.91371 0.95180 0.94190 0.91375 0.94535 0.93357 0.99828 0.99818 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.19 71.98 0.66 -1.35 16 2 C -0.09 -1.27 2.88 -10.80 -0.03 -1.30 16 3 C -0.14 -1.81 9.01 71.98 0.65 -1.16 16 4 C -0.08 -1.39 4.04 30.59 0.12 -1.26 16 5 C -0.13 -2.16 4.73 -10.77 -0.05 -2.21 16 6 H 0.11 1.62 8.07 -2.39 -0.02 1.60 16 7 C -0.17 -2.83 9.83 30.62 0.30 -2.53 16 8 C -0.15 -3.01 5.95 -10.79 -0.06 -3.08 16 9 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 10 C 0.09 2.27 5.05 86.30 0.44 2.71 16 11 N -0.68 -19.26 5.71 -513.91 -2.94 -22.20 16 12 C 0.08 2.90 4.65 86.30 0.40 3.30 16 13 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 14 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 15 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 16 C 0.04 2.04 4.04 29.85 0.12 2.16 16 17 C -0.51 -28.66 7.65 25.60 0.20 -28.46 16 18 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 20 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 21 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.73 7.38 -2.39 -0.02 0.71 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 33 H 0.06 1.00 7.88 -2.39 -0.02 0.98 16 34 H 0.09 1.52 7.92 -2.39 -0.02 1.50 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.66 7.60 -2.39 -0.02 1.64 16 37 H 0.02 0.59 7.87 -2.39 -0.02 0.57 16 38 H 0.34 9.10 6.77 -89.69 -0.61 8.50 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 2.28 7.60 -2.39 -0.02 2.27 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 43 H 0.04 1.64 6.62 -2.38 -0.02 1.62 16 44 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -61.95 375.37 3.96 -57.99 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.26 Total: 17.83 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 4.32 Total: -42.76 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.65 Total: -79.93 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.95 3.96 -57.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.030 kcal (2) G-P(sol) polarization free energy of solvation -61.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds