Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 H 1.09006 * 115.54872 * 29.27798 * 5 4 2 7 7 C 1.52995 * 117.50303 * 243.61453 * 5 4 2 8 8 C 1.53001 * 117.50477 * 174.98430 * 5 4 2 9 9 H 1.09000 * 117.49288 * 0.02562 * 8 5 4 10 10 C 1.52991 * 117.50092 * 214.97944 * 8 5 4 11 11 N 1.46908 * 109.47161 * 174.99849 * 10 8 5 12 12 C 1.46899 * 111.00250 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47186 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46708 * 299.99971 * 13 12 11 15 15 C 1.53001 * 109.47360 * 59.99879 * 13 12 11 16 16 C 1.53001 * 109.47138 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47159 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99898 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00108 * 179.97438 * 17 16 13 20 20 N 1.31520 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47012 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46972 * 120.00026 * 21 19 17 24 24 H 1.48492 * 109.47479 * 240.00579 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09008 * 117.49762 * 359.97438 * 7 5 4 35 35 H 1.09001 * 117.50183 * 144.99431 * 7 5 4 36 36 H 1.08998 * 109.47575 * 294.99758 * 10 8 5 37 37 H 1.09000 * 109.47326 * 55.00810 * 10 8 5 38 38 H 1.00897 * 110.99621 * 303.95953 * 11 10 8 39 39 H 1.09005 * 109.46886 * 300.00529 * 12 11 10 40 40 H 1.09003 * 109.47013 * 60.00047 * 12 11 10 41 41 H 1.08991 * 109.47197 * 60.00098 * 14 13 12 42 42 H 1.08997 * 109.46709 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.46907 * 299.99672 * 14 13 12 44 44 H 1.08996 * 109.46876 * 59.99989 * 15 13 12 45 45 H 1.08997 * 109.46936 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47132 * 300.00156 * 15 13 12 47 47 H 1.09005 * 109.46610 * 299.99778 * 16 13 12 48 48 H 1.08996 * 109.47121 * 59.99610 * 16 13 12 49 49 H 0.96999 * 119.99825 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.8311 1.1879 6 1 4.0719 -0.0357 0.6415 7 6 4.1698 -2.2345 1.1155 8 6 4.2804 -1.4194 2.4056 9 1 3.6647 -1.7286 3.2503 10 6 5.6530 -0.8463 2.7636 11 7 6.1225 -1.4477 4.0190 12 6 7.4405 -0.9194 4.3952 13 6 7.8954 -1.5682 5.7041 14 6 6.8848 -1.2515 6.8084 15 6 7.9880 -3.0839 5.5168 16 6 9.2679 -1.0175 6.0963 17 6 9.7157 -1.6560 7.3857 18 1 9.0842 -2.3818 7.8767 19 6 10.9313 -1.3138 7.9387 20 7 11.7001 -0.4297 7.3412 21 14 11.4861 -2.1048 9.5375 22 1 10.4478 -3.0585 10.0042 23 1 12.7611 -2.8325 9.3134 24 1 11.6904 -1.0529 10.5655 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7198 1.2950 34 1 3.4814 -3.0797 1.1119 35 1 5.0747 -2.3625 0.5215 36 1 6.3604 -1.0721 1.9657 37 1 5.5751 0.2341 2.8853 38 1 5.4521 -1.3076 4.7599 39 1 8.1605 -1.1453 3.6086 40 1 7.3747 0.1605 4.5283 41 1 5.9069 -1.6435 6.5292 42 1 7.2090 -1.7133 7.7409 43 1 6.8189 -0.1717 6.9418 44 1 8.7079 -3.3094 4.7301 45 1 8.3116 -3.5461 6.4494 46 1 7.0099 -3.4759 5.2376 47 1 9.9880 -1.2427 5.3096 48 1 9.2015 0.0622 6.2298 49 1 12.5552 -0.1887 7.7305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387732900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = -21.049948 kcal Electronic energy + Delta-G solvation = -20409.721624 eV Core-core repulsion = 17563.771339 eV Total energy + Delta-G solvation = -2845.950285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.81339 -37.45936 -35.72595 -33.67830 -32.03163 -28.16637 -27.47632 -26.98651 -26.31399 -26.11201 -24.11101 -22.10441 -21.58105 -20.48783 -19.98646 -17.78815 -16.22036 -15.93016 -15.37174 -14.99925 -14.88526 -14.51156 -14.01328 -13.82918 -13.53589 -13.25260 -12.92846 -12.69539 -12.51262 -12.37073 -12.14926 -11.97650 -11.86418 -11.77551 -11.29443 -11.18501 -11.04569 -10.95346 -10.85786 -10.80191 -10.73274 -10.47272 -10.24926 -10.11871 -9.94495 -9.80458 -9.62684 -8.97620 -8.78726 -8.29904 -8.00863 -5.94224 -3.94118 3.33828 3.41572 3.45245 3.65685 4.25101 4.50070 4.61971 4.63999 4.67120 4.83129 4.95206 5.11952 5.18483 5.33340 5.41350 5.41745 5.44699 5.51055 5.52988 5.61474 5.69924 5.71031 5.75170 5.77898 5.81002 5.88637 5.89945 6.00678 6.02441 6.11661 6.16849 6.28684 6.30364 6.38194 6.54924 6.70437 6.82998 6.86618 7.24419 7.27651 7.29906 7.45798 7.71611 7.75461 7.88869 8.06453 8.51070 9.11553 9.68577 11.17509 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047305 B = 0.002630 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.766270 B =10644.191634 C =10753.724560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.155 4.155 6 H 0.104 0.896 7 C -0.170 4.170 8 C -0.139 4.139 9 H 0.103 0.897 10 C 0.088 3.912 11 N -0.684 5.684 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.337 0.663 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.897 0.529 -13.833 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.120 4.120 5 C -0.173 4.173 6 H 0.122 0.878 7 C -0.207 4.207 8 C -0.157 4.157 9 H 0.121 0.879 10 C -0.041 4.041 11 N -0.316 5.316 12 C -0.059 4.059 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.472 0.060 -14.122 24.053 hybrid contribution 0.313 0.580 1.156 1.331 sum -19.159 0.639 -12.965 23.142 Atomic orbital electron populations 1.21850 0.95424 1.01603 1.01668 1.21078 0.95350 0.96391 0.98500 1.21896 1.01341 0.95885 1.01507 1.21226 0.92715 1.00361 0.97724 1.22529 0.95014 0.97302 1.02478 0.87805 1.23139 1.02732 0.93972 1.00820 1.22350 0.97669 1.03529 0.92172 0.87853 1.21495 0.93528 0.95364 0.93737 1.60554 1.05041 1.61062 1.04943 1.22105 0.89483 0.95857 0.98440 1.20620 0.97845 0.95778 0.91582 1.21771 0.96787 1.00147 0.99934 1.21597 0.99573 0.95262 1.00892 1.19136 0.89262 0.95771 0.96320 1.21279 1.02588 1.23357 1.07081 0.92230 1.25029 0.96938 0.95374 0.97392 1.69983 1.11506 1.32896 1.39409 0.86601 0.78614 0.79227 0.83952 1.19775 1.21175 1.21215 0.92729 0.92794 0.92828 0.91209 0.92734 0.92357 0.93019 0.91730 0.91942 0.89166 0.88978 0.91283 0.95472 0.84367 0.91686 0.95973 0.94795 0.91725 0.94143 0.94218 0.92730 0.93860 0.96688 0.96932 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.68 2.92 -90.63 -0.26 -0.95 16 3 C -0.15 -1.07 9.01 37.16 0.33 -0.74 16 4 C -0.08 -0.67 4.96 -26.74 -0.13 -0.80 16 5 C -0.15 -1.42 5.24 -90.62 -0.48 -1.89 16 6 H 0.10 0.96 6.38 -51.93 -0.33 0.63 16 7 C -0.17 -1.67 9.82 -26.73 -0.26 -1.94 16 8 C -0.14 -1.50 5.67 -90.62 -0.51 -2.02 16 9 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 10 C 0.09 1.13 5.97 -3.82 -0.02 1.10 16 11 N -0.68 -10.22 5.71 -113.78 -0.65 -10.87 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.22 16 13 C -0.06 -1.17 0.60 -154.50 -0.09 -1.27 16 14 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 15 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 16 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 17 C -0.50 -13.94 7.65 -34.44 -0.26 -14.21 16 18 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 6.41 -51.93 -0.33 0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 34 H 0.09 0.83 8.03 -51.92 -0.42 0.42 16 35 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.34 4.83 6.76 -39.29 -0.27 4.56 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.06 1.32 6.61 -51.93 -0.34 0.98 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -28.83 375.88 -10.04 -38.87 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -9.78 Total: 0.04 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -0.99 Total: -24.10 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.09 Total: -37.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.83 -10.04 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.817 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds