Wall clock time and date at job start Mon Mar 30 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 H 1.09006 * 115.54872 * 29.27798 * 5 4 2 7 7 C 1.52995 * 117.50303 * 243.61453 * 5 4 2 8 8 C 1.53001 * 117.50477 * 174.98430 * 5 4 2 9 9 H 1.09000 * 117.49288 * 0.02562 * 8 5 4 10 10 C 1.52991 * 117.50092 * 214.97944 * 8 5 4 11 11 N 1.46908 * 109.47161 * 174.99849 * 10 8 5 12 12 C 1.46899 * 111.00250 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47186 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46708 * 299.99971 * 13 12 11 15 15 C 1.53001 * 109.47360 * 59.99879 * 13 12 11 16 16 C 1.53001 * 109.47138 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47159 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99898 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00108 * 179.97438 * 17 16 13 20 20 N 1.31520 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47012 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46972 * 120.00026 * 21 19 17 24 24 H 1.48492 * 109.47479 * 240.00579 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09008 * 117.49762 * 359.97438 * 7 5 4 35 35 H 1.09001 * 117.50183 * 144.99431 * 7 5 4 36 36 H 1.08998 * 109.47575 * 294.99758 * 10 8 5 37 37 H 1.09000 * 109.47326 * 55.00810 * 10 8 5 38 38 H 1.00897 * 110.99621 * 303.95953 * 11 10 8 39 39 H 1.09005 * 109.46886 * 300.00529 * 12 11 10 40 40 H 1.09003 * 109.47013 * 60.00047 * 12 11 10 41 41 H 1.08991 * 109.47197 * 60.00098 * 14 13 12 42 42 H 1.08997 * 109.46709 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.46907 * 299.99672 * 14 13 12 44 44 H 1.08996 * 109.46876 * 59.99989 * 15 13 12 45 45 H 1.08997 * 109.46936 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47132 * 300.00156 * 15 13 12 47 47 H 1.09005 * 109.46610 * 299.99778 * 16 13 12 48 48 H 1.08996 * 109.47121 * 59.99610 * 16 13 12 49 49 H 0.96999 * 119.99825 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.8311 1.1879 6 1 4.0719 -0.0357 0.6415 7 6 4.1698 -2.2345 1.1155 8 6 4.2804 -1.4194 2.4056 9 1 3.6647 -1.7286 3.2503 10 6 5.6530 -0.8463 2.7636 11 7 6.1225 -1.4477 4.0190 12 6 7.4405 -0.9194 4.3952 13 6 7.8954 -1.5682 5.7041 14 6 6.8848 -1.2515 6.8084 15 6 7.9880 -3.0839 5.5168 16 6 9.2679 -1.0175 6.0963 17 6 9.7157 -1.6560 7.3857 18 1 9.0842 -2.3818 7.8767 19 6 10.9313 -1.3138 7.9387 20 7 11.7001 -0.4297 7.3412 21 14 11.4861 -2.1048 9.5375 22 1 10.4478 -3.0585 10.0042 23 1 12.7611 -2.8325 9.3134 24 1 11.6904 -1.0529 10.5655 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7198 1.2950 34 1 3.4814 -3.0797 1.1119 35 1 5.0747 -2.3625 0.5215 36 1 6.3604 -1.0721 1.9657 37 1 5.5751 0.2341 2.8853 38 1 5.4521 -1.3076 4.7599 39 1 8.1605 -1.1453 3.6086 40 1 7.3747 0.1605 4.5283 41 1 5.9069 -1.6435 6.5292 42 1 7.2090 -1.7133 7.7409 43 1 6.8189 -0.1717 6.9418 44 1 8.7079 -3.3094 4.7301 45 1 8.3116 -3.5461 6.4494 46 1 7.0099 -3.4759 5.2376 47 1 9.9880 -1.2427 5.3096 48 1 9.2015 0.0622 6.2298 49 1 12.5552 -0.1887 7.7305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387732900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:30 Heat of formation + Delta-G solvation = -34.849621 kcal Electronic energy + Delta-G solvation = -20410.320023 eV Core-core repulsion = 17563.771339 eV Total energy + Delta-G solvation = -2846.548684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72739 -38.86554 -36.54799 -35.16940 -33.89787 -29.39644 -28.58401 -28.00650 -27.89257 -27.31706 -25.70267 -23.78726 -22.34570 -21.35879 -20.61131 -19.43939 -18.33496 -16.89398 -16.58367 -16.43501 -15.85185 -15.69832 -15.18104 -15.02265 -14.79164 -14.45991 -14.16873 -13.89860 -13.79816 -13.52473 -13.32664 -13.15432 -12.90840 -12.82694 -12.66527 -12.51016 -12.42857 -12.28301 -12.18024 -12.12835 -11.88267 -11.78115 -11.62999 -11.42496 -11.39122 -10.91037 -10.83726 -10.68861 -10.51373 -10.48592 -9.25668 -8.14107 -6.21114 1.40300 1.41174 1.53595 2.43727 2.83228 3.19709 3.29873 3.77907 3.94486 4.00179 4.11219 4.16239 4.22010 4.26076 4.35404 4.39165 4.49411 4.54460 4.67140 4.74726 4.80581 4.82832 4.84825 4.88401 4.95600 4.96602 4.99166 5.03212 5.08458 5.11272 5.17404 5.21327 5.22134 5.31949 5.36153 5.43140 5.51690 5.53937 5.55555 5.56599 5.58464 5.66216 5.87262 5.92800 6.11016 6.37127 6.55244 6.94165 7.46173 8.98497 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047305 B = 0.002630 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.766270 B =10644.191634 C =10753.724560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.080 4.080 5 C -0.142 4.142 6 H 0.103 0.897 7 C -0.169 4.169 8 C -0.148 4.148 9 H 0.106 0.894 10 C 0.091 3.909 11 N -0.680 5.680 12 C 0.082 3.918 13 C -0.054 4.054 14 C -0.122 4.122 15 C -0.107 4.107 16 C 0.038 3.962 17 C -0.512 4.512 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.958 3.042 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.344 0.656 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.067 0.933 47 H -0.017 1.017 48 H -0.016 1.016 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.897 -0.380 -13.780 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.117 4.117 5 C -0.160 4.160 6 H 0.121 0.879 7 C -0.206 4.206 8 C -0.166 4.166 9 H 0.124 0.876 10 C -0.038 4.038 11 N -0.312 5.312 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.180 4.180 15 C -0.164 4.164 16 C 0.001 3.999 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.784 3.216 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.164 0.836 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.497 -0.858 -14.072 25.708 hybrid contribution 0.924 0.891 1.075 1.674 sum -20.573 0.033 -12.998 24.335 Atomic orbital electron populations 1.21836 0.94719 1.01922 1.01942 1.21064 0.95932 0.96175 0.98002 1.21899 1.01006 0.96017 1.01742 1.21218 0.91742 1.00694 0.98083 1.22554 0.95688 0.96928 1.00868 0.87863 1.23192 1.02909 0.94630 0.99886 1.22245 0.96715 1.04792 0.92853 0.87642 1.21496 0.94570 0.95417 0.92365 1.60490 1.03838 1.60972 1.05945 1.21811 0.90984 0.95268 0.96679 1.20486 0.95328 0.96160 0.93513 1.21687 0.97868 0.99985 0.98423 1.21502 1.00580 0.94553 0.99776 1.19027 0.91850 0.94101 0.94947 1.21642 1.02662 1.23082 1.07602 0.91535 1.25953 0.97263 0.96009 1.01132 1.70123 1.12027 1.34543 1.41309 0.85494 0.78276 0.78417 0.79462 1.18407 1.20876 1.20792 0.92734 0.92466 0.92311 0.91295 0.92905 0.92869 0.92419 0.91851 0.91564 0.88292 0.89281 0.91822 0.95449 0.83629 0.92765 0.96577 0.91354 0.93365 0.94481 0.95203 0.94191 0.91391 0.99829 0.99788 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.18 2.92 -10.80 -0.03 -1.21 16 3 C -0.15 -1.93 9.01 71.98 0.65 -1.28 16 4 C -0.08 -1.13 4.96 30.59 0.15 -0.98 16 5 C -0.14 -2.35 5.24 -10.80 -0.06 -2.41 16 6 H 0.10 1.75 6.38 -2.38 -0.02 1.73 16 7 C -0.17 -3.02 9.82 30.59 0.30 -2.72 16 8 C -0.15 -2.92 5.67 -10.79 -0.06 -2.98 16 9 H 0.11 2.07 8.13 -2.39 -0.02 2.06 16 10 C 0.09 2.19 5.97 86.30 0.51 2.71 16 11 N -0.68 -19.21 5.71 -513.88 -2.94 -22.15 16 12 C 0.08 2.89 4.65 86.30 0.40 3.29 16 13 C -0.05 -2.20 0.60 -52.18 -0.03 -2.24 16 14 C -0.12 -4.46 7.89 71.98 0.57 -3.90 16 15 C -0.11 -4.15 8.06 71.98 0.58 -3.56 16 16 C 0.04 2.02 4.04 29.85 0.12 2.14 16 17 C -0.51 -28.63 7.65 25.60 0.20 -28.44 16 18 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 21 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.73 6.41 -2.39 -0.02 0.72 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.90 7.88 -2.39 -0.02 0.88 16 34 H 0.10 1.60 8.03 -2.38 -0.02 1.58 16 35 H 0.09 1.65 8.03 -2.39 -0.02 1.63 16 36 H 0.06 1.61 7.88 -2.39 -0.02 1.59 16 37 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.34 8.99 6.76 -89.70 -0.61 8.38 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 42 H 0.05 1.91 6.61 -2.39 -0.02 1.89 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 46 H 0.07 2.29 7.60 -2.38 -0.02 2.27 16 47 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 48 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -62.07 375.88 4.06 -58.01 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.26 Total: 17.40 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 4.42 Total: -42.46 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.65 Total: -79.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.07 4.06 -58.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.156 kcal (2) G-P(sol) polarization free energy of solvation -62.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds