Wall clock time and date at job start Mon Mar 30 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.53006 * 109.46740 * 120.00224 * 2 1 3 5 5 C 1.52989 * 109.47322 * 64.99823 * 4 2 1 6 6 H 1.09004 * 115.56709 * 330.70047 * 5 4 2 7 7 C 1.53006 * 117.49907 * 116.39377 * 5 4 2 8 8 C 1.52997 * 59.99924 * 107.49013 * 7 5 4 9 9 H 1.09002 * 117.49910 * 252.51140 * 8 7 5 10 10 C 1.53001 * 117.49889 * 107.49507 * 8 7 5 11 11 N 1.46897 * 109.47238 * 116.37603 * 10 8 7 12 12 C 1.46896 * 111.00137 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47280 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47272 * 300.00064 * 13 12 11 15 15 C 1.53001 * 109.47054 * 60.00482 * 13 12 11 16 16 C 1.53004 * 109.47069 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46991 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99917 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00511 * 21 19 17 23 23 H 1.48510 * 109.46738 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47299 * 300.00058 * 21 19 17 25 25 H 1.09003 * 109.46902 * 59.99907 * 1 2 3 26 26 H 1.09003 * 109.47447 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47092 * 300.00260 * 1 2 3 28 28 H 1.08997 * 109.47092 * 239.99740 * 2 1 3 29 29 H 1.09004 * 109.47136 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47226 * 299.99895 * 3 2 1 31 31 H 1.08997 * 109.47267 * 59.99847 * 3 2 1 32 32 H 1.08997 * 109.46816 * 304.99400 * 4 2 1 33 33 H 1.09002 * 109.46538 * 185.00229 * 4 2 1 34 34 H 1.08999 * 117.49661 * 214.97815 * 7 5 4 35 35 H 1.08999 * 117.49552 * 359.97335 * 7 5 4 36 36 H 1.08999 * 109.46614 * 236.37147 * 10 8 7 37 37 H 1.08991 * 109.47055 * 356.37158 * 10 8 7 38 38 H 1.00896 * 111.00065 * 303.95048 * 11 10 8 39 39 H 1.09000 * 109.47288 * 299.99694 * 12 11 10 40 40 H 1.09012 * 109.47038 * 59.99885 * 12 11 10 41 41 H 1.09004 * 109.47068 * 59.99957 * 14 13 12 42 42 H 1.09001 * 109.47121 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47065 * 300.00272 * 14 13 12 44 44 H 1.08998 * 109.47227 * 59.99538 * 15 13 12 45 45 H 1.09001 * 109.46975 * 179.97438 * 15 13 12 46 46 H 1.09004 * 109.46807 * 299.99749 * 15 13 12 47 47 H 1.09000 * 109.47336 * 299.99904 * 16 13 12 48 48 H 1.09000 * 109.46960 * 59.99916 * 16 13 12 49 49 H 0.97000 * 119.99633 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1954 1.1880 6 1 0.7161 -2.4086 0.6419 7 6 2.7567 -3.2337 1.1158 8 6 1.9512 -3.0661 2.4058 9 1 2.4476 -2.5886 3.2506 10 6 0.9533 -4.1692 2.7638 11 7 1.3638 -4.8122 4.0192 12 6 0.4263 -5.8788 4.3954 13 6 0.8863 -6.5238 5.7043 14 6 2.2844 -7.1164 5.5171 15 6 0.9245 -5.4655 6.8086 16 6 -0.0898 -7.6351 6.0958 17 6 0.3636 -8.2709 7.3847 18 1 1.2583 -7.9174 7.8757 19 6 -0.3642 -9.3032 7.9377 20 7 -1.4539 -9.7332 7.3400 21 14 0.1982 -10.0917 9.5349 22 1 0.2363 -9.0650 10.6072 23 1 -0.7500 -11.1694 9.9156 24 1 1.5549 -10.6671 9.3520 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2618 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 2.5756 -4.1297 0.5222 35 1 3.7829 -2.8663 1.1116 36 1 -0.0393 -3.7356 2.8854 37 1 0.9304 -4.9113 1.9660 38 1 2.3064 -5.1658 3.9530 39 1 -0.5698 -5.4567 4.5284 40 1 0.3993 -6.6330 3.6088 41 1 2.9800 -6.3250 5.2380 42 1 2.6119 -7.5763 6.4495 43 1 2.2571 -7.8703 4.7304 44 1 -0.0715 -5.0434 6.9419 45 1 1.2518 -5.9252 7.7412 46 1 1.6201 -4.6741 6.5294 47 1 -1.0860 -7.2134 6.2291 48 1 -0.1167 -8.3889 5.3090 49 1 -1.9662 -10.4592 7.7292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387732901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:33 Heat of formation + Delta-G solvation = -21.257723 kcal Electronic energy + Delta-G solvation = -20408.864410 eV Core-core repulsion = 17562.905116 eV Total energy + Delta-G solvation = -2845.959295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.82792 -37.45378 -35.72748 -33.66328 -32.02685 -28.15897 -27.46196 -26.98365 -26.30362 -26.11482 -24.14772 -22.14945 -21.52186 -20.43913 -19.97129 -17.81077 -16.25603 -16.06816 -15.30568 -15.03690 -14.71899 -14.45935 -14.04352 -13.79807 -13.55833 -13.33485 -12.78903 -12.70183 -12.53148 -12.37556 -12.26513 -11.96399 -11.88342 -11.75105 -11.33143 -11.10381 -11.03259 -10.93599 -10.85084 -10.79592 -10.76426 -10.46119 -10.24704 -10.13223 -9.97839 -9.75986 -9.63533 -8.97548 -8.80208 -8.29045 -8.03569 -5.93707 -3.93732 3.36427 3.40849 3.43198 3.64447 4.22387 4.50253 4.61516 4.63356 4.66989 4.84961 4.94532 5.11273 5.18924 5.34830 5.38448 5.41874 5.46394 5.52688 5.56295 5.63066 5.68246 5.72580 5.72689 5.76619 5.81313 5.88891 5.95141 6.00900 6.02719 6.12880 6.15816 6.27387 6.31824 6.39082 6.55161 6.70283 6.83067 6.86532 7.24513 7.27784 7.29853 7.45961 7.71784 7.75987 7.89144 8.06700 8.51255 9.11412 9.68737 11.17954 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002630 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.956859 B =10643.415293 C =10756.170314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.149 4.149 6 H 0.104 0.896 7 C -0.181 4.181 8 C -0.141 4.141 9 H 0.111 0.889 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.339 0.661 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 17.899 -14.579 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.120 4.120 5 C -0.167 4.167 6 H 0.122 0.878 7 C -0.218 4.218 8 C -0.159 4.159 9 H 0.129 0.871 10 C -0.041 4.041 11 N -0.317 5.317 12 C -0.059 4.059 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.507 18.237 -14.163 23.990 hybrid contribution 0.379 -1.320 0.177 1.384 sum 6.885 16.917 -13.987 23.005 Atomic orbital electron populations 1.21896 0.95248 1.01953 1.01542 1.21080 0.95949 0.95836 0.98454 1.21848 1.00847 0.96157 1.01692 1.21229 1.00347 0.92650 0.97817 1.22469 0.99818 0.92174 1.02250 0.87789 1.23222 0.96370 1.00935 1.01317 1.22453 1.01371 1.00161 0.91950 0.87108 1.21487 0.97694 0.94155 0.90771 1.60542 1.06341 1.33472 1.31309 1.22104 0.95710 0.90998 0.97063 1.20621 0.96401 0.96285 0.92529 1.21772 0.96230 0.98722 1.01921 1.21597 1.00216 0.97157 0.98341 1.19126 0.93427 0.91664 0.96195 1.21205 1.09647 1.16403 1.07220 0.92348 1.25025 0.95136 0.97155 0.97357 1.69960 1.16291 1.28055 1.39485 0.86716 0.78374 0.79002 0.84242 1.20316 1.21470 1.20372 0.93045 0.92362 0.92645 0.91292 0.92822 0.92838 0.92682 0.91515 0.91983 0.89206 0.89089 0.91061 0.95729 0.84255 0.91648 0.96007 0.94772 0.91732 0.94155 0.94211 0.92729 0.93883 0.96694 0.96952 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.01 37.16 0.33 -0.75 16 2 C -0.09 -0.69 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -0.96 9.19 37.15 0.34 -0.62 16 4 C -0.08 -0.68 4.96 -26.73 -0.13 -0.81 16 5 C -0.15 -1.37 5.24 -90.62 -0.48 -1.84 16 6 H 0.10 0.96 6.38 -51.93 -0.33 0.63 16 7 C -0.18 -1.72 9.82 -26.73 -0.26 -1.99 16 8 C -0.14 -1.52 5.67 -90.62 -0.51 -2.04 16 9 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 10 C 0.09 1.13 5.97 -3.82 -0.02 1.10 16 11 N -0.69 -10.23 5.71 -113.78 -0.65 -10.88 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.22 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 14 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 15 C -0.12 -2.29 8.07 37.16 0.30 -1.99 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.99 7.65 -34.44 -0.26 -14.26 16 18 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.44 6.41 -51.93 -0.33 0.11 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 34 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.34 4.89 6.77 -39.29 -0.27 4.62 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -28.67 375.89 -10.04 -38.71 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -9.78 Total: 0.27 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -0.99 Total: -24.17 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.09 Total: -37.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.67 -10.04 -38.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.452 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds