Wall clock time and date at job start Mon Mar 30 2020 06:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.53006 * 109.46740 * 120.00224 * 2 1 3 5 5 C 1.52989 * 109.47322 * 64.99823 * 4 2 1 6 6 H 1.09004 * 115.56709 * 330.70047 * 5 4 2 7 7 C 1.53006 * 117.49907 * 116.39377 * 5 4 2 8 8 C 1.52997 * 59.99924 * 107.49013 * 7 5 4 9 9 H 1.09002 * 117.49910 * 252.51140 * 8 7 5 10 10 C 1.53001 * 117.49889 * 107.49507 * 8 7 5 11 11 N 1.46897 * 109.47238 * 116.37603 * 10 8 7 12 12 C 1.46896 * 111.00137 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47280 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47272 * 300.00064 * 13 12 11 15 15 C 1.53001 * 109.47054 * 60.00482 * 13 12 11 16 16 C 1.53004 * 109.47069 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46991 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99917 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00511 * 21 19 17 23 23 H 1.48510 * 109.46738 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47299 * 300.00058 * 21 19 17 25 25 H 1.09003 * 109.46902 * 59.99907 * 1 2 3 26 26 H 1.09003 * 109.47447 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47092 * 300.00260 * 1 2 3 28 28 H 1.08997 * 109.47092 * 239.99740 * 2 1 3 29 29 H 1.09004 * 109.47136 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47226 * 299.99895 * 3 2 1 31 31 H 1.08997 * 109.47267 * 59.99847 * 3 2 1 32 32 H 1.08997 * 109.46816 * 304.99400 * 4 2 1 33 33 H 1.09002 * 109.46538 * 185.00229 * 4 2 1 34 34 H 1.08999 * 117.49661 * 214.97815 * 7 5 4 35 35 H 1.08999 * 117.49552 * 359.97335 * 7 5 4 36 36 H 1.08999 * 109.46614 * 236.37147 * 10 8 7 37 37 H 1.08991 * 109.47055 * 356.37158 * 10 8 7 38 38 H 1.00896 * 111.00065 * 303.95048 * 11 10 8 39 39 H 1.09000 * 109.47288 * 299.99694 * 12 11 10 40 40 H 1.09012 * 109.47038 * 59.99885 * 12 11 10 41 41 H 1.09004 * 109.47068 * 59.99957 * 14 13 12 42 42 H 1.09001 * 109.47121 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47065 * 300.00272 * 14 13 12 44 44 H 1.08998 * 109.47227 * 59.99538 * 15 13 12 45 45 H 1.09001 * 109.46975 * 179.97438 * 15 13 12 46 46 H 1.09004 * 109.46807 * 299.99749 * 15 13 12 47 47 H 1.09000 * 109.47336 * 299.99904 * 16 13 12 48 48 H 1.09000 * 109.46960 * 59.99916 * 16 13 12 49 49 H 0.97000 * 119.99633 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1954 1.1880 6 1 0.7161 -2.4086 0.6419 7 6 2.7567 -3.2337 1.1158 8 6 1.9512 -3.0661 2.4058 9 1 2.4476 -2.5886 3.2506 10 6 0.9533 -4.1692 2.7638 11 7 1.3638 -4.8122 4.0192 12 6 0.4263 -5.8788 4.3954 13 6 0.8863 -6.5238 5.7043 14 6 2.2844 -7.1164 5.5171 15 6 0.9245 -5.4655 6.8086 16 6 -0.0898 -7.6351 6.0958 17 6 0.3636 -8.2709 7.3847 18 1 1.2583 -7.9174 7.8757 19 6 -0.3642 -9.3032 7.9377 20 7 -1.4539 -9.7332 7.3400 21 14 0.1982 -10.0917 9.5349 22 1 0.2363 -9.0650 10.6072 23 1 -0.7500 -11.1694 9.9156 24 1 1.5549 -10.6671 9.3520 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2618 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 2.5756 -4.1297 0.5222 35 1 3.7829 -2.8663 1.1116 36 1 -0.0393 -3.7356 2.8854 37 1 0.9304 -4.9113 1.9660 38 1 2.3064 -5.1658 3.9530 39 1 -0.5698 -5.4567 4.5284 40 1 0.3993 -6.6330 3.6088 41 1 2.9800 -6.3250 5.2380 42 1 2.6119 -7.5763 6.4495 43 1 2.2571 -7.8703 4.7304 44 1 -0.0715 -5.0434 6.9419 45 1 1.2518 -5.9252 7.7412 46 1 1.6201 -4.6741 6.5294 47 1 -1.0860 -7.2134 6.2291 48 1 -0.1167 -8.3889 5.3090 49 1 -1.9662 -10.4592 7.7292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387732901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:32 Heat of formation + Delta-G solvation = -34.928056 kcal Electronic energy + Delta-G solvation = -20409.457200 eV Core-core repulsion = 17562.905116 eV Total energy + Delta-G solvation = -2846.552085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74019 -38.86352 -36.55347 -35.15860 -33.88948 -29.39424 -28.58270 -28.00254 -27.89156 -27.30481 -25.72719 -23.82721 -22.28792 -21.31872 -20.60404 -19.45828 -18.32831 -17.15365 -16.58269 -16.19327 -15.90279 -15.65027 -15.17231 -15.06364 -14.69021 -14.41762 -14.16580 -13.96812 -13.87040 -13.49681 -13.26895 -13.21395 -12.96919 -12.75550 -12.71657 -12.50014 -12.42795 -12.26511 -12.18453 -12.13249 -11.91205 -11.75799 -11.62757 -11.42868 -11.38210 -10.91544 -10.83440 -10.68356 -10.49830 -10.47903 -9.29441 -8.13595 -6.20776 1.41091 1.43675 1.50893 2.44072 2.84268 3.19978 3.23857 3.77996 3.96758 3.99925 4.12017 4.14692 4.22644 4.26356 4.32306 4.38837 4.48756 4.53357 4.66780 4.76525 4.81055 4.83044 4.88435 4.90156 4.94353 4.96729 4.97954 5.02969 5.08408 5.11327 5.17632 5.21149 5.21965 5.31842 5.36067 5.43361 5.51622 5.53749 5.55975 5.56988 5.58490 5.66067 5.87317 5.92729 6.11541 6.37213 6.55532 6.93995 7.46327 8.98590 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002630 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.956859 B =10643.415293 C =10756.170314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.080 4.080 5 C -0.140 4.140 6 H 0.103 0.897 7 C -0.174 4.174 8 C -0.150 4.150 9 H 0.107 0.893 10 C 0.091 3.909 11 N -0.680 5.680 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.122 4.122 15 C -0.107 4.107 16 C 0.039 3.961 17 C -0.514 4.514 18 H 0.066 0.934 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.958 3.042 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.345 0.655 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.067 0.933 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 19.145 -14.822 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.158 4.158 6 H 0.121 0.879 7 C -0.211 4.211 8 C -0.168 4.168 9 H 0.125 0.875 10 C -0.038 4.038 11 N -0.313 5.313 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.180 4.180 15 C -0.164 4.164 16 C 0.001 3.999 17 C -0.552 4.552 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.338 19.501 -14.412 25.642 hybrid contribution -0.215 -1.676 0.195 1.700 sum 8.123 17.826 -14.217 24.205 Atomic orbital electron populations 1.21901 0.95374 1.01685 1.01729 1.21064 0.95822 0.96273 0.97974 1.21836 1.01092 0.95571 1.01931 1.21216 1.00607 0.91875 0.98057 1.22511 0.99835 0.92751 1.00753 0.87861 1.23270 0.96916 1.00989 0.99896 1.22289 1.01744 1.00241 0.92553 0.87484 1.21486 0.98113 0.94560 0.89658 1.60475 1.05965 1.31983 1.32836 1.21812 0.95873 0.91495 0.95559 1.20485 0.95950 0.94967 0.94087 1.21688 0.95704 0.99563 1.01013 1.21503 1.00233 0.97341 0.97328 1.19017 0.93360 0.92549 0.94931 1.21585 1.09651 1.16241 1.07757 0.91549 1.25954 0.95242 0.98000 1.01104 1.70108 1.17686 1.28793 1.41363 0.85605 0.78169 0.78052 0.79856 1.19323 1.21381 1.19214 0.92392 0.92850 0.92960 0.91230 0.92440 0.92279 0.92800 0.91992 0.91522 0.89182 0.88025 0.91684 0.95631 0.83588 0.92699 0.96640 0.91359 0.93340 0.94533 0.95202 0.94177 0.91370 0.99833 0.99832 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.01 71.98 0.65 -1.34 16 2 C -0.09 -1.19 2.92 -10.79 -0.03 -1.22 16 3 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 4 C -0.08 -1.16 4.96 30.59 0.15 -1.01 16 5 C -0.14 -2.33 5.24 -10.80 -0.06 -2.39 16 6 H 0.10 1.76 6.38 -2.38 -0.02 1.74 16 7 C -0.17 -2.91 9.82 30.60 0.30 -2.61 16 8 C -0.15 -2.97 5.67 -10.79 -0.06 -3.03 16 9 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 10 C 0.09 2.20 5.97 86.30 0.51 2.72 16 11 N -0.68 -19.26 5.71 -513.90 -2.94 -22.19 16 12 C 0.08 2.89 4.65 86.30 0.40 3.29 16 13 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 14 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 15 C -0.11 -4.14 8.07 71.98 0.58 -3.56 16 16 C 0.04 2.06 4.04 29.85 0.12 2.18 16 17 C -0.51 -28.79 7.65 25.60 0.20 -28.59 16 18 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 19 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 20 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 21 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.75 6.41 -2.39 -0.02 0.74 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.91 7.88 -2.39 -0.02 0.90 16 34 H 0.09 1.53 8.03 -2.39 -0.02 1.51 16 35 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.03 0.62 7.87 -2.39 -0.02 0.60 16 38 H 0.34 9.11 6.77 -89.70 -0.61 8.50 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.07 2.02 6.57 -2.38 -0.02 2.01 16 42 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 46 H 0.07 2.29 7.60 -2.38 -0.02 2.27 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -61.85 375.89 4.06 -57.78 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.26 Total: 17.87 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 4.42 Total: -42.60 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.65 Total: -79.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.85 4.06 -57.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.855 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds