Wall clock time and date at job start Mon Mar 30 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52996 * 109.47276 * 65.00128 * 4 2 1 6 6 H 1.09004 * 115.54998 * 29.32664 * 5 4 2 7 7 C 1.53000 * 117.50085 * 243.62444 * 5 4 2 8 8 C 1.53001 * 117.49878 * 174.99801 * 5 4 2 9 9 H 1.08995 * 117.49571 * 215.00024 * 8 5 4 10 10 C 1.53001 * 117.50001 * 0.02562 * 8 5 4 11 11 N 1.46898 * 109.47243 * 184.99767 * 10 8 5 12 12 C 1.46895 * 111.00212 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46840 * 299.99750 * 13 12 11 15 15 C 1.52996 * 109.47364 * 59.99986 * 13 12 11 16 16 C 1.53008 * 109.47296 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.47096 * 179.97438 * 16 13 12 18 18 H 1.07992 * 120.00275 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99539 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00666 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47129 * 59.99414 * 21 19 17 23 23 H 1.48499 * 109.47505 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47291 * 300.00057 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 33 33 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 34 34 H 1.09000 * 117.49614 * 359.97438 * 7 5 4 35 35 H 1.08997 * 117.50262 * 145.02281 * 7 5 4 36 36 H 1.08997 * 109.46896 * 305.00107 * 10 8 5 37 37 H 1.08995 * 109.46867 * 64.99619 * 10 8 5 38 38 H 1.00901 * 110.99481 * 56.04550 * 11 10 8 39 39 H 1.09004 * 109.46707 * 300.00545 * 12 11 10 40 40 H 1.09001 * 109.47235 * 59.99674 * 12 11 10 41 41 H 1.08995 * 109.47000 * 60.00435 * 14 13 12 42 42 H 1.09006 * 109.47028 * 180.02562 * 14 13 12 43 43 H 1.09007 * 109.46984 * 299.99743 * 14 13 12 44 44 H 1.08996 * 109.47267 * 60.00120 * 15 13 12 45 45 H 1.08997 * 109.47161 * 180.02562 * 15 13 12 46 46 H 1.09001 * 109.46830 * 299.99862 * 15 13 12 47 47 H 1.09004 * 109.46722 * 300.00217 * 16 13 12 48 48 H 1.09006 * 109.46764 * 59.99488 * 16 13 12 49 49 H 0.96997 * 120.00824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1878 6 1 1.5393 -2.6154 0.1865 7 6 0.6791 -2.7110 2.2652 8 6 2.1541 -3.1171 2.2935 9 1 2.3992 -4.1432 2.0196 10 6 3.0373 -2.4938 3.3763 11 7 3.5307 -3.5479 4.2726 12 6 4.3839 -2.9851 5.3277 13 6 4.8780 -4.1106 6.2386 14 6 3.6783 -4.8156 6.8747 15 6 5.6831 -5.1173 5.4146 16 6 5.7671 -3.5245 7.3372 17 6 6.2533 -4.6331 8.2348 18 1 5.9574 -5.6535 8.0413 19 6 7.0750 -4.3443 9.3036 20 7 7.4350 -3.1017 9.5395 21 14 7.6771 -5.7184 10.4167 22 1 8.4581 -6.6965 9.6175 23 1 8.5402 -5.1495 11.4828 24 1 6.5122 -6.4017 11.0342 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1264 -0.6443 1.2951 33 1 1.6055 -0.2618 2.1369 34 1 0.3387 -2.0000 3.0180 35 1 -0.0463 -3.4702 1.9729 36 1 3.8828 -1.9887 2.9092 37 1 2.4549 -1.7726 3.9496 38 1 4.0194 -4.2630 3.7550 39 1 5.2387 -2.4831 4.8744 40 1 3.8104 -2.2675 5.9145 41 1 3.0453 -5.2332 6.0918 42 1 4.0303 -5.6172 7.5241 43 1 3.1047 -4.0983 7.4618 44 1 6.5378 -4.6151 4.9614 45 1 6.0347 -5.9194 6.0635 46 1 5.0500 -5.5350 4.6317 47 1 6.6218 -3.0224 6.8836 48 1 5.1939 -2.8069 7.9243 49 1 8.0135 -2.8986 10.2912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387732903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:35 Heat of formation + Delta-G solvation = -20.808952 kcal Electronic energy + Delta-G solvation = -20623.986268 eV Core-core repulsion = 17778.046434 eV Total energy + Delta-G solvation = -2845.939834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.93601 -37.42403 -35.59304 -33.65407 -32.01560 -27.83239 -27.40901 -27.14803 -26.39008 -26.25506 -24.17364 -22.06695 -21.60907 -20.70146 -19.50088 -17.72651 -16.20749 -15.88422 -15.48842 -15.13244 -14.70529 -14.58726 -14.00168 -13.79325 -13.51129 -13.18722 -13.04027 -12.60291 -12.46859 -12.31326 -12.16696 -11.96635 -11.84119 -11.67206 -11.28810 -11.22592 -10.99753 -10.93461 -10.84199 -10.79717 -10.76470 -10.45935 -10.23689 -10.12277 -9.89801 -9.81725 -9.62534 -8.97387 -8.80319 -8.29078 -7.99904 -5.93707 -3.93806 3.36353 3.40842 3.43179 3.67921 4.38938 4.42412 4.52387 4.68391 4.71111 4.84901 4.97175 5.13446 5.30907 5.39856 5.41099 5.41941 5.48131 5.49804 5.57853 5.63909 5.71351 5.74229 5.78270 5.81802 5.83630 5.89329 5.95418 6.02431 6.06807 6.10926 6.20420 6.27070 6.29704 6.38382 6.55066 6.70646 6.83220 6.86629 7.24553 7.28004 7.30026 7.46331 7.71678 7.75803 7.89176 8.06695 8.51305 9.11423 9.68758 11.17985 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038091 B = 0.002879 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.903792 B = 9724.713297 C =10119.671092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.085 4.085 5 C -0.150 4.150 6 H 0.100 0.900 7 C -0.169 4.169 8 C -0.141 4.141 9 H 0.103 0.897 10 C 0.090 3.910 11 N -0.685 5.685 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.337 0.663 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 4.447 -18.945 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.122 4.122 5 C -0.168 4.168 6 H 0.118 0.882 7 C -0.206 4.206 8 C -0.160 4.160 9 H 0.121 0.879 10 C -0.039 4.039 11 N -0.317 5.317 12 C -0.058 4.058 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.744 4.567 -18.422 22.861 hybrid contribution 1.221 -0.457 0.218 1.322 sum -11.522 4.110 -18.203 21.932 Atomic orbital electron populations 1.21837 0.95240 1.01901 1.01289 1.21109 0.95964 0.95930 0.98247 1.21854 1.01015 0.96128 1.01649 1.21231 1.00697 0.92502 0.97813 1.22417 1.04663 0.95072 0.94673 0.88174 1.23095 0.92776 1.03325 1.01398 1.22346 0.95972 0.99224 0.98411 0.87889 1.21456 0.96587 0.93795 0.92103 1.60542 1.43189 1.13174 1.14767 1.22097 0.93715 0.97446 0.92589 1.20621 0.95890 0.93892 0.95438 1.21596 0.96552 1.00022 0.99128 1.21767 0.98386 0.99813 0.98649 1.19125 0.93523 0.95941 0.91802 1.21204 1.28637 0.93853 1.10795 0.92349 1.25017 0.96597 0.95232 0.97770 1.69953 1.36293 1.17817 1.29763 0.86725 0.78760 0.82428 0.80474 1.20372 1.21458 1.20308 0.92825 0.93245 0.92365 0.91427 0.92677 0.92707 0.92877 0.91627 0.91717 0.88898 0.89276 0.95409 0.91310 0.84380 0.95995 0.91699 0.93861 0.92746 0.94235 0.94143 0.91743 0.94804 0.96947 0.96710 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.01 37.16 0.33 -0.72 16 2 C -0.09 -0.72 2.88 -90.62 -0.26 -0.98 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.09 -0.75 4.04 -26.73 -0.11 -0.86 16 5 C -0.15 -1.36 4.72 -90.62 -0.43 -1.79 16 6 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 7 C -0.17 -1.65 9.82 -26.73 -0.26 -1.91 16 8 C -0.14 -1.52 5.95 -90.61 -0.54 -2.06 16 9 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 10 C 0.09 1.14 5.05 -3.82 -0.02 1.12 16 11 N -0.68 -10.22 5.71 -113.79 -0.65 -10.87 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.23 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 14 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 15 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -14.00 7.65 -34.44 -0.26 -14.26 16 18 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.62 7.60 -51.93 -0.39 0.22 16 33 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 34 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.36 7.60 -51.93 -0.39 -0.04 16 37 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 38 H 0.34 4.82 6.76 -39.29 -0.27 4.55 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 42 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 46 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -28.76 375.34 -10.07 -38.83 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.86 Total: 0.18 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.93 Total: -24.18 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.09 Total: -37.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.76 -10.07 -38.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.022 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds