Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52996 * 109.47276 * 65.00128 * 4 2 1 6 6 H 1.09004 * 115.54998 * 29.32664 * 5 4 2 7 7 C 1.53000 * 117.50085 * 243.62444 * 5 4 2 8 8 C 1.53001 * 117.49878 * 174.99801 * 5 4 2 9 9 H 1.08995 * 117.49571 * 215.00024 * 8 5 4 10 10 C 1.53001 * 117.50001 * 0.02562 * 8 5 4 11 11 N 1.46898 * 109.47243 * 184.99767 * 10 8 5 12 12 C 1.46895 * 111.00212 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46840 * 299.99750 * 13 12 11 15 15 C 1.52996 * 109.47364 * 59.99986 * 13 12 11 16 16 C 1.53008 * 109.47296 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.47096 * 179.97438 * 16 13 12 18 18 H 1.07992 * 120.00275 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99539 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00666 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47129 * 59.99414 * 21 19 17 23 23 H 1.48499 * 109.47505 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47291 * 300.00057 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 33 33 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 34 34 H 1.09000 * 117.49614 * 359.97438 * 7 5 4 35 35 H 1.08997 * 117.50262 * 145.02281 * 7 5 4 36 36 H 1.08997 * 109.46896 * 305.00107 * 10 8 5 37 37 H 1.08995 * 109.46867 * 64.99619 * 10 8 5 38 38 H 1.00901 * 110.99481 * 56.04550 * 11 10 8 39 39 H 1.09004 * 109.46707 * 300.00545 * 12 11 10 40 40 H 1.09001 * 109.47235 * 59.99674 * 12 11 10 41 41 H 1.08995 * 109.47000 * 60.00435 * 14 13 12 42 42 H 1.09006 * 109.47028 * 180.02562 * 14 13 12 43 43 H 1.09007 * 109.46984 * 299.99743 * 14 13 12 44 44 H 1.08996 * 109.47267 * 60.00120 * 15 13 12 45 45 H 1.08997 * 109.47161 * 180.02562 * 15 13 12 46 46 H 1.09001 * 109.46830 * 299.99862 * 15 13 12 47 47 H 1.09004 * 109.46722 * 300.00217 * 16 13 12 48 48 H 1.09006 * 109.46764 * 59.99488 * 16 13 12 49 49 H 0.96997 * 120.00824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1878 6 1 1.5393 -2.6154 0.1865 7 6 0.6791 -2.7110 2.2652 8 6 2.1541 -3.1171 2.2935 9 1 2.3992 -4.1432 2.0196 10 6 3.0373 -2.4938 3.3763 11 7 3.5307 -3.5479 4.2726 12 6 4.3839 -2.9851 5.3277 13 6 4.8780 -4.1106 6.2386 14 6 3.6783 -4.8156 6.8747 15 6 5.6831 -5.1173 5.4146 16 6 5.7671 -3.5245 7.3372 17 6 6.2533 -4.6331 8.2348 18 1 5.9574 -5.6535 8.0413 19 6 7.0750 -4.3443 9.3036 20 7 7.4350 -3.1017 9.5395 21 14 7.6771 -5.7184 10.4167 22 1 8.4581 -6.6965 9.6175 23 1 8.5402 -5.1495 11.4828 24 1 6.5122 -6.4017 11.0342 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1264 -0.6443 1.2951 33 1 1.6055 -0.2618 2.1369 34 1 0.3387 -2.0000 3.0180 35 1 -0.0463 -3.4702 1.9729 36 1 3.8828 -1.9887 2.9092 37 1 2.4549 -1.7726 3.9496 38 1 4.0194 -4.2630 3.7550 39 1 5.2387 -2.4831 4.8744 40 1 3.8104 -2.2675 5.9145 41 1 3.0453 -5.2332 6.0918 42 1 4.0303 -5.6172 7.5241 43 1 3.1047 -4.0983 7.4618 44 1 6.5378 -4.6151 4.9614 45 1 6.0347 -5.9194 6.0635 46 1 5.0500 -5.5350 4.6317 47 1 6.6218 -3.0224 6.8836 48 1 5.1939 -2.8069 7.9243 49 1 8.0135 -2.8986 10.2912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387732903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = -34.638497 kcal Electronic energy + Delta-G solvation = -20624.585962 eV Core-core repulsion = 17778.046434 eV Total energy + Delta-G solvation = -2846.539529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84127 -38.87195 -36.42416 -35.16190 -33.88257 -29.25704 -28.43541 -27.99202 -27.89247 -27.63787 -25.80613 -23.79450 -22.40400 -21.38857 -20.35472 -19.34196 -18.32856 -16.87444 -16.61454 -16.44663 -15.91070 -15.68402 -15.39258 -14.94846 -14.68319 -14.48579 -14.05300 -13.92744 -13.85391 -13.52406 -13.44189 -13.13092 -12.86891 -12.78239 -12.71010 -12.48144 -12.34834 -12.26682 -12.16560 -12.12523 -11.89971 -11.86144 -11.63658 -11.46938 -11.38387 -10.88528 -10.82561 -10.66557 -10.51334 -10.49851 -9.24862 -8.13696 -6.20979 1.41006 1.43476 1.50760 2.43976 2.85594 3.19952 3.34075 3.69359 3.94299 3.98741 4.12369 4.16663 4.20796 4.25024 4.36740 4.40383 4.50920 4.63566 4.67191 4.73956 4.80911 4.82981 4.84787 4.87625 4.90631 4.96299 5.01232 5.03408 5.08476 5.11514 5.20304 5.21398 5.22124 5.33352 5.37806 5.44548 5.48133 5.51609 5.53768 5.56915 5.58458 5.66149 5.87347 5.92690 6.11633 6.37219 6.55981 6.93937 7.46287 8.98586 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038091 B = 0.002879 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.903792 B = 9724.713297 C =10119.671092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.085 4.085 5 C -0.135 4.135 6 H 0.113 0.887 7 C -0.167 4.167 8 C -0.152 4.152 9 H 0.107 0.893 10 C 0.094 3.906 11 N -0.681 5.681 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.039 3.961 17 C -0.515 4.515 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.268 1.268 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.344 0.656 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.028 0.972 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.068 0.932 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 3.076 -20.469 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.122 4.122 5 C -0.153 4.153 6 H 0.131 0.869 7 C -0.204 4.204 8 C -0.170 4.170 9 H 0.125 0.875 10 C -0.035 4.035 11 N -0.313 5.313 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.164 4.164 15 C -0.179 4.179 16 C 0.002 3.998 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.193 1.193 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.164 0.836 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.002 0.998 48 H 0.001 0.999 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.728 3.184 -19.966 24.438 hybrid contribution 1.499 0.030 0.662 1.639 sum -12.229 3.214 -19.303 23.076 Atomic orbital electron populations 1.21819 0.94811 1.01977 1.01479 1.21094 0.96271 0.95951 0.97702 1.21857 1.00883 0.96037 1.01902 1.21223 1.00214 0.92585 0.98191 1.22447 1.03334 0.94761 0.94782 0.86947 1.23132 0.92374 1.03423 1.01493 1.22264 0.96347 0.99686 0.98733 0.87496 1.21435 0.96770 0.93187 0.92140 1.60479 1.42123 1.13845 1.14875 1.21801 0.93758 0.96158 0.92978 1.20486 0.95446 0.94962 0.94603 1.21499 0.96322 0.99145 0.99398 1.21683 0.98634 0.98701 0.98920 1.19014 0.93011 0.94919 0.92876 1.21586 1.28162 0.94597 1.10920 0.91550 1.25939 0.96989 0.97668 0.99596 1.70101 1.37258 1.20088 1.30568 0.85618 0.78425 0.79348 0.78377 1.19206 1.21353 1.19318 0.93273 0.92454 0.92325 0.90944 0.93059 0.92945 0.92012 0.92332 0.92497 0.89461 0.88210 0.95441 0.92045 0.83616 0.96616 0.92835 0.91373 0.94188 0.95272 0.94505 0.93360 0.91337 0.99816 0.99882 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.01 71.98 0.65 -1.18 16 2 C -0.09 -1.26 2.88 -10.79 -0.03 -1.29 16 3 C -0.15 -2.00 9.19 71.98 0.66 -1.34 16 4 C -0.08 -1.38 4.04 30.59 0.12 -1.26 16 5 C -0.13 -2.17 4.72 -10.79 -0.05 -2.22 16 6 H 0.11 1.59 8.08 -2.38 -0.02 1.57 16 7 C -0.17 -2.93 9.82 30.60 0.30 -2.63 16 8 C -0.15 -2.98 5.95 -10.79 -0.06 -3.04 16 9 H 0.11 2.05 8.13 -2.39 -0.02 2.03 16 10 C 0.09 2.27 5.05 86.30 0.44 2.70 16 11 N -0.68 -19.25 5.71 -513.91 -2.94 -22.18 16 12 C 0.08 2.91 4.65 86.30 0.40 3.31 16 13 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 14 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 15 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -28.82 7.65 25.60 0.20 -28.62 16 18 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 20 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 21 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.74 7.38 -2.39 -0.02 0.72 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.04 7.60 -2.39 -0.02 1.02 16 33 H 0.06 1.02 7.88 -2.39 -0.02 1.00 16 34 H 0.09 1.64 7.92 -2.39 -0.02 1.62 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 0.68 7.60 -2.39 -0.02 0.66 16 37 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 38 H 0.34 8.97 6.76 -89.69 -0.61 8.37 16 39 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 42 H 0.04 1.64 6.62 -2.38 -0.02 1.63 16 43 H 0.03 1.15 8.14 -2.38 -0.02 1.14 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 46 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 47 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 48 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 49 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -62.10 375.34 3.96 -58.15 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.26 Total: 17.89 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 4.32 Total: -42.89 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.65 Total: -79.96 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.10 3.96 -58.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387732903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.508 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds