Wall clock time and date at job start Mon Mar 30 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 N 1.46898 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.46906 * 110.99961 * 84.99970 * 8 7 6 10 10 C 1.52998 * 109.46913 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46989 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47687 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99382 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00705 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99547 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00267 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47205 * 59.99683 * 17 15 13 19 19 H 1.48504 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46934 * 299.99847 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 22 22 C 1.52996 * 109.47302 * 295.00294 * 4 3 2 23 23 H 1.09004 * 109.47346 * 59.99582 * 1 2 3 24 24 H 1.09001 * 109.47630 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47196 * 299.99807 * 1 2 3 26 26 H 1.09002 * 109.47196 * 240.00193 * 2 1 3 27 27 H 1.09004 * 109.47346 * 120.00418 * 2 1 3 28 28 H 1.09002 * 109.46818 * 59.99962 * 3 2 1 29 29 H 1.08994 * 109.47281 * 300.00513 * 3 2 1 30 30 H 1.09001 * 109.46652 * 55.00422 * 4 3 2 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 36 36 H 1.00893 * 111.00338 * 321.04590 * 8 7 6 37 37 H 1.08996 * 109.46971 * 299.99790 * 9 8 7 38 38 H 1.08994 * 109.47376 * 59.99710 * 9 8 7 39 39 H 1.09005 * 109.47167 * 299.99475 * 10 9 8 40 40 H 1.08996 * 109.47723 * 60.00027 * 10 9 8 41 41 H 1.09005 * 109.46654 * 299.99686 * 11 10 9 42 42 H 1.08994 * 109.47422 * 59.99665 * 11 10 9 43 43 H 1.09000 * 109.47274 * 300.00215 * 12 11 10 44 44 H 1.09003 * 109.47627 * 59.99529 * 12 11 10 45 45 H 0.97003 * 119.99545 * 179.97438 * 16 15 13 46 46 H 1.09002 * 109.47045 * 180.02562 * 21 7 6 47 47 H 1.09001 * 109.47375 * 59.99966 * 21 7 6 48 48 H 1.08992 * 109.47554 * 299.99692 * 22 4 3 49 49 H 1.09004 * 109.47108 * 59.99942 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8794 -0.1251 6 6 5.6100 2.8794 -0.1251 7 6 6.1200 2.2696 1.1823 8 7 7.5890 2.2690 1.1820 9 6 8.1161 3.5576 1.6509 10 6 9.6455 3.5184 1.6372 11 6 10.1945 4.8602 2.1262 12 6 11.7238 4.8208 2.1131 13 6 12.2646 6.1427 2.5941 14 1 11.5853 6.9318 2.8809 15 6 13.6265 6.3443 2.6691 16 7 14.4537 5.3828 2.3214 17 14 14.2966 7.9826 3.2660 18 1 13.8194 8.2384 4.6487 19 1 15.7811 7.9444 3.2533 20 1 13.8222 9.0675 2.3699 21 6 5.6100 0.8326 1.3079 22 6 4.0795 0.8329 1.3082 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9336 0.8529 -0.8410 31 1 3.7171 3.3137 -1.0566 32 1 3.7165 3.4690 0.7166 33 1 5.9734 2.2900 -0.9668 34 1 5.9735 3.9031 -0.2141 35 1 5.7568 2.8590 2.0241 36 1 7.9504 2.0417 0.2678 37 1 7.7668 4.3538 0.9936 38 1 7.7669 3.7452 2.6662 39 1 9.9944 2.7222 2.2949 40 1 9.9952 3.3306 0.6221 41 1 9.8455 5.6567 1.4689 42 1 9.8449 5.0476 3.1414 43 1 12.0724 4.0244 2.7706 44 1 12.0739 4.6332 1.0981 45 1 15.4118 5.5248 2.3738 46 1 5.9729 0.3984 2.2395 47 1 5.9732 0.2432 0.4660 48 1 3.7160 1.4224 2.1498 49 1 3.7161 -0.1908 1.3978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395390064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:45 Heat of formation + Delta-G solvation = -67.711465 kcal Electronic energy + Delta-G solvation = -20073.347252 eV Core-core repulsion = 17225.373572 eV Total energy + Delta-G solvation = -2847.973680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.48380 -36.68157 -34.92132 -33.50811 -32.05970 -30.97696 -30.00675 -27.80324 -25.57527 -24.00203 -23.10738 -21.80905 -21.40723 -20.74245 -20.09539 -19.77054 -16.28850 -15.95886 -15.57743 -15.24326 -14.77854 -14.51096 -14.40721 -14.30680 -13.86264 -13.71075 -13.31046 -12.78606 -12.55573 -12.49785 -12.37647 -12.16107 -11.89825 -11.61130 -11.52416 -11.32962 -11.24040 -11.12805 -10.97480 -10.87439 -10.69807 -10.58377 -10.51184 -10.38670 -10.25859 -10.13948 -9.58899 -9.21472 -8.97178 -8.30074 -8.25071 -5.94923 -3.97133 3.35929 3.39988 3.42663 4.14017 4.40298 4.44229 4.50065 4.58025 4.70827 4.84345 4.94813 5.03304 5.10026 5.24124 5.30659 5.34318 5.36843 5.38397 5.40324 5.46339 5.52781 5.56490 5.60552 5.64498 5.68984 5.78231 5.83296 5.89815 5.93804 5.96546 6.02382 6.03258 6.05971 6.20139 6.25855 6.27612 6.35308 6.56242 6.87353 7.01314 7.12673 7.29401 7.50496 7.74005 7.90538 8.06340 8.49155 9.10146 9.66418 11.16355 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.063313 B = 0.002214 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.143352 B =12643.582833 C =12840.554472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.109 4.109 6 C -0.149 4.149 7 C 0.087 3.913 8 N -0.688 5.688 9 C 0.060 3.940 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.106 4.106 22 C -0.114 4.114 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.339 0.661 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.452 -10.585 -5.650 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.106 4.106 5 C -0.148 4.148 6 C -0.188 4.188 7 C -0.023 4.023 8 N -0.317 5.317 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.145 4.145 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.192 -10.925 -5.031 28.822 hybrid contribution 0.310 1.536 -0.514 1.649 sum -25.882 -9.389 -5.545 28.085 Atomic orbital electron populations 1.21784 0.96130 1.01458 1.01687 1.21588 0.95573 0.97135 1.02120 1.21662 0.95069 0.96662 1.01882 1.21198 0.94648 0.96422 0.98355 1.21514 0.95186 0.96407 1.01646 1.22280 0.96225 1.01270 0.99063 1.21588 0.87766 0.96398 0.96520 1.60627 1.06168 1.32576 1.32317 1.22085 0.96407 0.88766 0.99620 1.21637 0.92539 0.99801 1.01376 1.21587 0.99673 0.94113 0.99325 1.19090 0.88587 0.96863 0.97077 1.21259 0.91503 0.99460 1.43669 0.92844 1.25036 0.97224 0.96682 0.95614 1.69966 1.02695 1.32339 1.48545 0.86666 0.77708 0.84310 0.79342 1.20273 1.21298 1.20315 1.21509 0.94308 0.96208 1.02429 1.21642 0.95597 1.00752 0.97192 0.92915 0.92918 0.92822 0.92180 0.91716 0.92050 0.92196 0.91320 0.92259 0.92030 0.91907 0.92057 0.90797 0.84362 0.95651 0.91452 0.91705 0.92827 0.93741 0.93488 0.96601 0.96752 0.93021 0.91344 0.92152 0.92101 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.78 5.69 -26.73 -0.15 -0.94 16 3 C -0.12 -0.76 4.68 -26.73 -0.13 -0.89 16 4 C -0.09 -0.65 2.19 -90.62 -0.20 -0.85 16 5 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 6 C -0.15 -1.43 5.17 -26.73 -0.14 -1.57 16 7 C 0.09 0.93 2.47 -67.71 -0.17 0.76 16 8 N -0.69 -8.77 6.25 -106.73 -0.67 -9.44 16 9 C 0.06 0.87 5.48 -3.82 -0.02 0.85 16 10 C -0.12 -2.03 5.48 -26.73 -0.15 -2.18 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 13 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C -0.11 -1.01 5.53 -26.71 -0.15 -1.16 16 22 C -0.11 -0.90 4.96 -26.71 -0.13 -1.03 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 35 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 36 H 0.34 4.12 8.47 -39.30 -0.33 3.78 16 37 H 0.03 0.36 7.43 -51.93 -0.39 -0.02 16 38 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -29.86 374.93 -11.17 -41.03 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -10.18 Total: -2.97 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.69 Total: -24.53 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.07 Total: -36.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.86 -11.17 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395390064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.682 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds