Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 3 2 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 N 1.46898 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.46906 * 110.99961 * 84.99970 * 8 7 6 10 10 C 1.52998 * 109.46913 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46989 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47687 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99382 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00705 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99547 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00267 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47205 * 59.99683 * 17 15 13 19 19 H 1.48504 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46934 * 299.99847 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 22 22 C 1.52996 * 109.47302 * 295.00294 * 4 3 2 23 23 H 1.09004 * 109.47346 * 59.99582 * 1 2 3 24 24 H 1.09001 * 109.47630 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47196 * 299.99807 * 1 2 3 26 26 H 1.09002 * 109.47196 * 240.00193 * 2 1 3 27 27 H 1.09004 * 109.47346 * 120.00418 * 2 1 3 28 28 H 1.09002 * 109.46818 * 59.99962 * 3 2 1 29 29 H 1.08994 * 109.47281 * 300.00513 * 3 2 1 30 30 H 1.09001 * 109.46652 * 55.00422 * 4 3 2 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 36 36 H 1.00893 * 111.00338 * 321.04590 * 8 7 6 37 37 H 1.08996 * 109.46971 * 299.99790 * 9 8 7 38 38 H 1.08994 * 109.47376 * 59.99710 * 9 8 7 39 39 H 1.09005 * 109.47167 * 299.99475 * 10 9 8 40 40 H 1.08996 * 109.47723 * 60.00027 * 10 9 8 41 41 H 1.09005 * 109.46654 * 299.99686 * 11 10 9 42 42 H 1.08994 * 109.47422 * 59.99665 * 11 10 9 43 43 H 1.09000 * 109.47274 * 300.00215 * 12 11 10 44 44 H 1.09003 * 109.47627 * 59.99529 * 12 11 10 45 45 H 0.97003 * 119.99545 * 179.97438 * 16 15 13 46 46 H 1.09002 * 109.47045 * 180.02562 * 21 7 6 47 47 H 1.09001 * 109.47375 * 59.99966 * 21 7 6 48 48 H 1.08992 * 109.47554 * 299.99692 * 22 4 3 49 49 H 1.09004 * 109.47108 * 59.99942 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8794 -0.1251 6 6 5.6100 2.8794 -0.1251 7 6 6.1200 2.2696 1.1823 8 7 7.5890 2.2690 1.1820 9 6 8.1161 3.5576 1.6509 10 6 9.6455 3.5184 1.6372 11 6 10.1945 4.8602 2.1262 12 6 11.7238 4.8208 2.1131 13 6 12.2646 6.1427 2.5941 14 1 11.5853 6.9318 2.8809 15 6 13.6265 6.3443 2.6691 16 7 14.4537 5.3828 2.3214 17 14 14.2966 7.9826 3.2660 18 1 13.8194 8.2384 4.6487 19 1 15.7811 7.9444 3.2533 20 1 13.8222 9.0675 2.3699 21 6 5.6100 0.8326 1.3079 22 6 4.0795 0.8329 1.3082 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9336 0.8529 -0.8410 31 1 3.7171 3.3137 -1.0566 32 1 3.7165 3.4690 0.7166 33 1 5.9734 2.2900 -0.9668 34 1 5.9735 3.9031 -0.2141 35 1 5.7568 2.8590 2.0241 36 1 7.9504 2.0417 0.2678 37 1 7.7668 4.3538 0.9936 38 1 7.7669 3.7452 2.6662 39 1 9.9944 2.7222 2.2949 40 1 9.9952 3.3306 0.6221 41 1 9.8455 5.6567 1.4689 42 1 9.8449 5.0476 3.1414 43 1 12.0724 4.0244 2.7706 44 1 12.0739 4.6332 1.0981 45 1 15.4118 5.5248 2.3738 46 1 5.9729 0.3984 2.2395 47 1 5.9732 0.2432 0.4660 48 1 3.7160 1.4224 2.1498 49 1 3.7161 -0.1908 1.3978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395390064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -82.599750 kcal Electronic energy + Delta-G solvation = -20073.992856 eV Core-core repulsion = 17225.373572 eV Total energy + Delta-G solvation = -2848.619285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23748 -37.71057 -36.24887 -34.91997 -33.64078 -31.71890 -31.12047 -29.23475 -26.71671 -25.41344 -23.87899 -22.90565 -22.48664 -21.81400 -21.26318 -20.65357 -18.43436 -16.98952 -16.54994 -16.40244 -16.19741 -15.68604 -15.29541 -15.11006 -14.75428 -14.57223 -14.39103 -14.16382 -13.87579 -13.55528 -13.31538 -13.13855 -13.05923 -12.92140 -12.76970 -12.48310 -12.28725 -12.19196 -12.12009 -12.02486 -11.97764 -11.79079 -11.46239 -11.38155 -11.35186 -11.31561 -11.10673 -10.94284 -10.74412 -10.55148 -9.26340 -8.19850 -6.31636 1.39109 1.42757 1.50769 2.40802 3.12503 3.18248 3.74256 3.78133 3.91617 4.07244 4.13087 4.19943 4.27841 4.35414 4.40539 4.45765 4.50284 4.60020 4.62351 4.64161 4.66803 4.74696 4.81768 4.84475 4.92626 4.96062 5.00507 5.04545 5.13640 5.16501 5.18144 5.24627 5.25647 5.27535 5.33947 5.37098 5.37982 5.41377 5.47200 5.54423 5.57462 5.64118 5.77384 5.86350 6.17078 6.25559 6.50487 6.85498 7.37526 8.91753 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.063313 B = 0.002214 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.143352 B =12643.582833 C =12840.554472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.083 4.083 5 C -0.107 4.107 6 C -0.144 4.144 7 C 0.088 3.912 8 N -0.694 5.694 9 C 0.073 3.927 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.102 4.102 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.342 0.658 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.050 0.950 43 H -0.011 1.011 44 H -0.010 1.010 45 H 0.264 0.736 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.956 -9.953 -5.687 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.145 4.145 6 C -0.183 4.183 7 C -0.021 4.021 8 N -0.324 5.324 9 C -0.056 4.056 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.140 4.140 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.721 -10.298 -5.071 30.004 hybrid contribution 0.791 1.288 -0.516 1.598 sum -26.930 -9.010 -5.587 28.942 Atomic orbital electron populations 1.21783 0.95745 1.01761 1.01778 1.21582 0.95928 0.96766 1.02095 1.21618 0.94276 0.97012 1.01965 1.21151 0.95255 0.95776 0.97976 1.21498 0.94044 0.96988 1.01955 1.22210 0.97249 1.00531 0.98350 1.21624 0.86324 0.97246 0.96925 1.60594 1.07655 1.31397 1.32722 1.21838 0.93894 0.89964 0.99932 1.21464 0.94841 0.97223 1.00785 1.21398 0.95761 0.96434 0.99908 1.19025 0.92420 0.95309 0.94721 1.21718 0.92269 1.00473 1.44020 0.92200 1.26037 0.97585 1.00936 0.95533 1.70107 1.03114 1.34736 1.49421 0.85470 0.77018 0.79164 0.79204 1.19141 1.20716 1.19118 1.21463 0.95469 0.95187 1.01905 1.21605 0.94244 1.01379 0.97443 0.92780 0.92546 0.92790 0.92190 0.91755 0.92106 0.91973 0.91411 0.91627 0.92128 0.91704 0.92991 0.91438 0.83941 0.95064 0.91490 0.92738 0.92885 0.93162 0.93167 0.99270 0.99197 0.92774 0.92314 0.92123 0.92181 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.35 5.69 30.59 0.17 -1.17 16 3 C -0.11 -1.27 4.68 30.59 0.14 -1.13 16 4 C -0.08 -1.09 2.19 -10.79 -0.02 -1.12 16 5 C -0.11 -1.57 5.20 30.59 0.16 -1.42 16 6 C -0.14 -2.57 5.17 30.60 0.16 -2.41 16 7 C 0.09 1.79 2.47 44.92 0.11 1.90 16 8 N -0.69 -17.08 6.25 -491.57 -3.07 -20.16 16 9 C 0.07 2.05 5.48 86.30 0.47 2.53 16 10 C -0.11 -3.69 5.48 30.60 0.17 -3.52 16 11 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 12 C 0.02 1.23 4.97 29.85 0.15 1.38 16 13 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 16 N -0.93 -58.28 13.29 21.45 0.28 -57.99 16 17 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.10 -1.82 5.53 30.61 0.17 -1.65 16 22 C -0.11 -1.54 4.96 30.61 0.15 -1.39 16 23 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.69 6.56 -2.39 -0.02 0.68 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 34 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 35 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 36 H 0.34 8.01 8.47 -89.70 -0.76 7.25 16 37 H 0.03 0.85 7.43 -2.39 -0.02 0.83 16 38 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.93 6.56 -2.38 -0.02 0.91 16 Total: -1.00 -63.68 374.93 2.73 -60.95 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.09 Total: 14.49 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 3.40 Total: -44.44 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.79 Total: -78.15 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -63.68 2.73 -60.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395390064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.649 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds