Wall clock time and date at job start Mon Mar 30 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.53006 * 109.46947 * 120.00230 * 2 1 3 5 5 C 1.52999 * 109.47000 * 65.00045 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46997 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47501 * 180.02562 * 8 7 6 10 10 C 1.46845 * 110.99677 * 294.21046 * 9 8 7 11 11 C 1.53038 * 109.52162 * 174.15956 * 10 9 8 12 12 C 1.53120 * 109.27912 * 59.17918 * 11 10 9 13 13 C 1.50701 * 109.57305 * 182.40833 * 12 11 10 14 14 H 1.08004 * 119.99988 * 119.71196 * 13 12 11 15 15 C 1.37881 * 120.00238 * 299.71421 * 13 12 11 16 16 N 1.31511 * 119.99678 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47450 * 89.99961 * 17 15 13 19 19 H 1.48507 * 109.46928 * 209.99614 * 17 15 13 20 20 H 1.48498 * 109.47387 * 329.99875 * 17 15 13 21 21 C 1.53121 * 109.15964 * 302.34400 * 12 11 10 22 22 C 1.46847 * 111.00413 * 169.99808 * 9 8 7 23 23 H 1.09000 * 109.47145 * 299.99895 * 1 2 3 24 24 H 1.09002 * 109.47139 * 60.00004 * 1 2 3 25 25 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46822 * 239.99791 * 2 1 3 27 27 H 1.09003 * 109.46520 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47083 * 300.00030 * 3 2 1 29 29 H 1.08993 * 109.47190 * 60.00310 * 3 2 1 30 30 H 1.08993 * 109.46765 * 304.99460 * 4 2 1 31 31 H 1.09000 * 109.46866 * 184.99860 * 4 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 5 4 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 5 4 2 34 34 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 35 35 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 36 36 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 37 37 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 38 38 H 1.09000 * 109.46866 * 300.00212 * 8 7 6 39 39 H 1.08996 * 109.47261 * 59.99820 * 8 7 6 40 40 H 1.08997 * 109.46411 * 294.16980 * 10 9 8 41 41 H 1.09004 * 109.46690 * 54.14536 * 10 9 8 42 42 H 1.09002 * 109.50416 * 299.23326 * 11 10 9 43 43 H 1.08998 * 109.50408 * 179.11946 * 11 10 9 44 44 H 1.08994 * 109.52456 * 62.25290 * 12 11 10 45 45 H 0.97001 * 119.99715 * 180.02562 * 16 15 13 46 46 H 1.09000 * 109.50283 * 297.71284 * 21 12 11 47 47 H 1.08994 * 109.50340 * 177.59558 * 21 12 11 48 48 H 1.08997 * 109.45837 * 305.85531 * 22 9 8 49 49 H 1.09004 * 109.45866 * 65.83373 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 6 2.1446 -2.9166 2.4375 7 6 1.7393 -4.3907 2.3764 8 6 2.2493 -5.1120 3.6257 9 7 1.8607 -6.5274 3.5669 10 6 0.4017 -6.6761 3.6423 11 6 0.0258 -8.1447 3.4324 12 6 0.7009 -8.9983 4.5096 13 6 0.3830 -10.4524 4.2741 14 1 1.1812 -11.1573 4.0935 15 6 -0.9267 -10.8831 4.2894 16 7 -1.8986 -10.0247 4.5088 17 14 -1.3205 -12.6857 3.9982 18 1 -1.3290 -13.4065 5.2965 19 1 -2.6553 -12.8036 3.3580 20 1 -0.2906 -13.2801 3.1088 21 6 2.2161 -8.7880 4.4409 22 6 2.5285 -7.3009 4.6215 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2952 32 1 2.0697 -2.6551 0.3003 33 1 0.5488 -2.2724 1.1420 34 1 3.2309 -2.8398 2.4839 35 1 1.7096 -2.4569 3.3250 36 1 0.6530 -4.4673 2.3303 37 1 2.1740 -4.8506 1.4890 38 1 3.3356 -5.0355 3.6714 39 1 1.8150 -4.6523 4.5135 40 1 0.0534 -6.3486 4.6218 41 1 -0.0659 -6.0674 2.8684 42 1 0.3616 -8.4691 2.4475 43 1 -1.0560 -8.2572 3.5040 44 1 0.3359 -8.7002 5.4924 45 1 -2.8200 -10.3278 4.5199 46 1 2.5863 -9.1226 3.4719 47 1 2.6991 -9.3601 5.2330 48 1 3.6055 -7.1458 4.5588 49 1 2.1700 -6.9704 5.5965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397143193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:38 Heat of formation + Delta-G solvation = -51.266606 kcal Electronic energy + Delta-G solvation = -20541.575320 eV Core-core repulsion = 17694.314743 eV Total energy + Delta-G solvation = -2847.260577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.39848 -37.44413 -35.04850 -33.38076 -31.46347 -29.74091 -29.38531 -27.43172 -26.28212 -24.59461 -22.47572 -22.02023 -21.08463 -20.53623 -19.94261 -18.52943 -16.34176 -15.98937 -15.25000 -15.12450 -14.50148 -14.32772 -14.27905 -14.12529 -13.37684 -13.27405 -12.79187 -12.59352 -12.56113 -12.44120 -12.17755 -12.04790 -11.80174 -11.63588 -11.28507 -11.25799 -10.97123 -10.92302 -10.77766 -10.72847 -10.58967 -10.54626 -10.33950 -10.16631 -10.13261 -9.91302 -9.35678 -8.90427 -8.63781 -8.25218 -7.66681 -5.93369 -3.98461 3.33634 3.40229 3.44066 4.34473 4.48379 4.60477 4.64944 4.69877 4.96413 5.10582 5.18516 5.29219 5.36303 5.37273 5.43435 5.53029 5.54408 5.56671 5.69141 5.71094 5.76410 5.82295 5.84814 5.91529 5.95563 6.00937 6.02038 6.05867 6.14935 6.21231 6.23109 6.28718 6.38436 6.41543 6.48950 6.69058 6.71090 6.91481 7.14139 7.23167 7.50360 7.68763 7.78501 7.89700 8.10364 8.21238 8.53056 9.05307 9.65587 11.12865 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.002802 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.109858 B = 9990.287830 C =10582.957411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.537 5.537 10 C 0.056 3.944 11 C -0.104 4.104 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.106 4.106 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.259 0.741 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 19.311 -6.206 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.073 4.073 9 N -0.262 5.262 10 C -0.071 4.071 11 C -0.142 4.142 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.067 4.067 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.837 19.121 -6.636 21.363 hybrid contribution -0.568 -0.613 0.686 1.081 sum 6.268 18.508 -5.950 20.426 Atomic orbital electron populations 1.21899 0.95297 1.02078 1.01444 1.21143 0.95973 0.95975 0.98667 1.21848 1.00827 0.96247 1.01569 1.21664 1.00613 0.95437 0.97501 1.21649 1.01289 0.94591 0.98274 1.21563 1.00706 0.95443 0.97808 1.21605 1.01342 0.93790 0.98622 1.22070 0.99702 0.89090 0.96459 1.61999 1.08905 1.07651 1.47654 1.22306 0.86019 1.00490 0.98326 1.21656 1.03418 0.89802 0.99367 1.18685 0.88780 0.94904 0.94762 1.21222 0.92038 0.93405 1.48059 0.92770 1.24976 0.96523 0.97305 0.95300 1.69882 0.99440 1.33608 1.50265 0.86633 0.77613 0.85710 0.78256 1.20836 1.21310 1.19963 1.21676 1.00300 0.91927 1.00523 1.22099 0.96961 0.96009 0.91635 0.92818 0.93040 0.92198 0.91328 0.92835 0.92913 0.92805 0.92136 0.92175 0.92045 0.91765 0.92275 0.92397 0.91848 0.91329 0.91748 0.95822 0.96208 0.92432 0.93881 0.89056 0.96250 0.93148 0.92518 0.93278 0.92597 0.96003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.95 37.16 0.33 -0.82 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 4 C -0.11 -0.94 4.68 -26.73 -0.13 -1.07 16 5 C -0.12 -1.13 4.97 -26.73 -0.13 -1.26 16 6 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 7 C -0.12 -1.51 5.14 -26.73 -0.14 -1.64 16 8 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 9 N -0.54 -9.94 4.66 -234.68 -1.09 -11.03 16 10 C 0.06 1.13 5.29 -3.83 -0.02 1.11 16 11 C -0.10 -2.52 5.12 -26.65 -0.14 -2.66 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.01 16 13 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -25.80 11.37 55.43 0.63 -25.17 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 22 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 39 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.07 6.21 -51.93 -0.32 0.75 16 42 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -28.20 368.82 -11.04 -39.24 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -10.06 Total: -3.30 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.05 Total: -21.86 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.46 Total: -36.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.20 -11.04 -39.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397143193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.025 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds