Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.53006 * 109.46947 * 120.00230 * 2 1 3 5 5 C 1.52999 * 109.47000 * 65.00045 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46997 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47501 * 180.02562 * 8 7 6 10 10 C 1.46845 * 110.99677 * 294.21046 * 9 8 7 11 11 C 1.53038 * 109.52162 * 174.15956 * 10 9 8 12 12 C 1.53120 * 109.27912 * 59.17918 * 11 10 9 13 13 C 1.50701 * 109.57305 * 182.40833 * 12 11 10 14 14 H 1.08004 * 119.99988 * 119.71196 * 13 12 11 15 15 C 1.37881 * 120.00238 * 299.71421 * 13 12 11 16 16 N 1.31511 * 119.99678 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47450 * 89.99961 * 17 15 13 19 19 H 1.48507 * 109.46928 * 209.99614 * 17 15 13 20 20 H 1.48498 * 109.47387 * 329.99875 * 17 15 13 21 21 C 1.53121 * 109.15964 * 302.34400 * 12 11 10 22 22 C 1.46847 * 111.00413 * 169.99808 * 9 8 7 23 23 H 1.09000 * 109.47145 * 299.99895 * 1 2 3 24 24 H 1.09002 * 109.47139 * 60.00004 * 1 2 3 25 25 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46822 * 239.99791 * 2 1 3 27 27 H 1.09003 * 109.46520 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47083 * 300.00030 * 3 2 1 29 29 H 1.08993 * 109.47190 * 60.00310 * 3 2 1 30 30 H 1.08993 * 109.46765 * 304.99460 * 4 2 1 31 31 H 1.09000 * 109.46866 * 184.99860 * 4 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 5 4 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 5 4 2 34 34 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 35 35 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 36 36 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 37 37 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 38 38 H 1.09000 * 109.46866 * 300.00212 * 8 7 6 39 39 H 1.08996 * 109.47261 * 59.99820 * 8 7 6 40 40 H 1.08997 * 109.46411 * 294.16980 * 10 9 8 41 41 H 1.09004 * 109.46690 * 54.14536 * 10 9 8 42 42 H 1.09002 * 109.50416 * 299.23326 * 11 10 9 43 43 H 1.08998 * 109.50408 * 179.11946 * 11 10 9 44 44 H 1.08994 * 109.52456 * 62.25290 * 12 11 10 45 45 H 0.97001 * 119.99715 * 180.02562 * 16 15 13 46 46 H 1.09000 * 109.50283 * 297.71284 * 21 12 11 47 47 H 1.08994 * 109.50340 * 177.59558 * 21 12 11 48 48 H 1.08997 * 109.45837 * 305.85531 * 22 9 8 49 49 H 1.09004 * 109.45866 * 65.83373 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 6 2.1446 -2.9166 2.4375 7 6 1.7393 -4.3907 2.3764 8 6 2.2493 -5.1120 3.6257 9 7 1.8607 -6.5274 3.5669 10 6 0.4017 -6.6761 3.6423 11 6 0.0258 -8.1447 3.4324 12 6 0.7009 -8.9983 4.5096 13 6 0.3830 -10.4524 4.2741 14 1 1.1812 -11.1573 4.0935 15 6 -0.9267 -10.8831 4.2894 16 7 -1.8986 -10.0247 4.5088 17 14 -1.3205 -12.6857 3.9982 18 1 -1.3290 -13.4065 5.2965 19 1 -2.6553 -12.8036 3.3580 20 1 -0.2906 -13.2801 3.1088 21 6 2.2161 -8.7880 4.4409 22 6 2.5285 -7.3009 4.6215 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2952 32 1 2.0697 -2.6551 0.3003 33 1 0.5488 -2.2724 1.1420 34 1 3.2309 -2.8398 2.4839 35 1 1.7096 -2.4569 3.3250 36 1 0.6530 -4.4673 2.3303 37 1 2.1740 -4.8506 1.4890 38 1 3.3356 -5.0355 3.6714 39 1 1.8150 -4.6523 4.5135 40 1 0.0534 -6.3486 4.6218 41 1 -0.0659 -6.0674 2.8684 42 1 0.3616 -8.4691 2.4475 43 1 -1.0560 -8.2572 3.5040 44 1 0.3359 -8.7002 5.4924 45 1 -2.8200 -10.3278 4.5199 46 1 2.5863 -9.1226 3.4719 47 1 2.6991 -9.3601 5.2330 48 1 3.6055 -7.1458 4.5588 49 1 2.1700 -6.9704 5.5965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397143193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = -64.413954 kcal Electronic energy + Delta-G solvation = -20542.145432 eV Core-core repulsion = 17694.314743 eV Total energy + Delta-G solvation = -2847.830689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93218 -38.19952 -36.38721 -34.88087 -33.11985 -31.47979 -30.55385 -28.00898 -27.83862 -25.95898 -24.03427 -23.58157 -22.19160 -21.62274 -20.66130 -20.35213 -18.44579 -16.88992 -16.80532 -16.31371 -16.04160 -15.47032 -15.28714 -15.05147 -14.87000 -14.47510 -14.38294 -14.18132 -13.91866 -13.36465 -13.24725 -13.05298 -12.92247 -12.76632 -12.72914 -12.57576 -12.43317 -12.17986 -12.04806 -12.00000 -11.87461 -11.77829 -11.53646 -11.42438 -11.29931 -11.18387 -11.08001 -10.78671 -10.60478 -10.37158 -9.16359 -8.08047 -6.21573 1.40717 1.41436 1.52037 2.43728 3.05043 3.18686 3.79737 3.97021 4.07639 4.09476 4.17893 4.22247 4.34385 4.34835 4.41384 4.50994 4.54612 4.70463 4.72086 4.76175 4.78256 4.81062 4.83464 4.88531 4.95482 4.97325 5.03676 5.05221 5.08572 5.09520 5.14304 5.21677 5.24684 5.31622 5.34944 5.39346 5.42734 5.49816 5.56900 5.60229 5.60936 5.63249 6.00269 6.03701 6.31608 6.38219 6.40968 6.90082 7.46068 8.96696 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.002802 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.109858 B = 9990.287830 C =10582.957411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.056 3.944 9 N -0.545 5.545 10 C 0.069 3.931 11 C -0.095 4.095 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.100 4.100 22 C 0.065 3.935 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.025 0.975 40 H 0.010 0.990 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.060 0.940 44 H -0.014 1.014 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 20.244 -6.705 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.072 4.072 9 N -0.270 5.270 10 C -0.059 4.059 11 C -0.134 4.134 12 C 0.024 3.976 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.062 4.062 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.004 0.996 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.136 20.065 -7.135 22.797 hybrid contribution -0.968 -0.899 0.848 1.570 sum 7.168 19.166 -6.287 21.406 Atomic orbital electron populations 1.21901 0.95456 1.01688 1.01711 1.21147 0.95850 0.96514 0.98318 1.21832 1.01067 0.95597 1.01848 1.21621 1.00895 0.94536 0.97746 1.21612 1.00886 0.95332 0.97716 1.21495 1.01342 0.93544 0.98353 1.21554 1.00433 0.95338 0.97480 1.22189 1.00931 0.86696 0.97371 1.61972 1.07274 1.10139 1.47568 1.22049 0.87828 0.97713 0.98292 1.21423 1.01292 0.92527 0.98135 1.18672 0.91638 0.94078 0.93203 1.21593 0.92344 0.94775 1.48382 0.93053 1.25774 0.96412 1.01615 0.95022 1.70023 0.99688 1.35438 1.50698 0.85607 0.77475 0.80538 0.78343 1.20164 1.20833 1.19323 1.21548 0.97279 0.94582 1.00382 1.22049 0.98819 0.93796 0.91566 0.92817 0.92540 0.92908 0.91515 0.92452 0.92479 0.92717 0.92157 0.91682 0.92180 0.92364 0.91240 0.92195 0.93069 0.91824 0.89793 0.95636 0.97223 0.90805 0.95122 0.92147 0.99597 0.93089 0.93024 0.92799 0.89367 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.95 71.98 0.64 -1.49 16 2 C -0.10 -1.37 2.92 -10.79 -0.03 -1.41 16 3 C -0.15 -1.73 9.19 71.98 0.66 -1.07 16 4 C -0.11 -1.61 4.68 30.60 0.14 -1.46 16 5 C -0.12 -2.01 4.97 30.60 0.15 -1.86 16 6 C -0.11 -2.03 5.21 30.60 0.16 -1.87 16 7 C -0.11 -2.66 5.14 30.60 0.16 -2.50 16 8 C 0.06 1.52 4.96 86.31 0.43 1.95 16 9 N -0.54 -19.36 4.66 -896.38 -4.17 -23.54 16 10 C 0.07 2.79 5.29 86.33 0.46 3.25 16 11 C -0.10 -4.74 5.12 30.65 0.16 -4.59 16 12 C 0.04 2.23 2.16 -11.46 -0.02 2.21 16 13 C -0.53 -30.41 8.56 25.60 0.22 -30.19 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.57 5.31 84.66 0.45 1.02 16 16 N -0.92 -54.39 11.37 21.45 0.24 -54.14 16 17 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 22 C 0.07 2.35 5.46 86.32 0.47 2.82 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.81 6.56 -2.39 -0.02 0.80 16 26 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.06 6.56 -2.39 -0.02 1.05 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.36 6.43 -2.39 -0.02 1.34 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16 39 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 2.73 6.21 -2.38 -0.01 2.72 16 42 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 3.36 6.17 -2.39 -0.01 3.35 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.09 2.63 8.01 -2.39 -0.02 2.61 16 49 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -60.88 368.82 3.15 -57.73 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.84 Total: 12.63 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 4.21 Total: -39.35 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -3.93 Total: -77.68 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.88 3.15 -57.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397143193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.681 kcal (2) G-P(sol) polarization free energy of solvation -60.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds