Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.52998 * 109.46983 * 120.00325 * 2 1 3 5 5 C 1.53001 * 109.47409 * 64.99844 * 4 2 1 6 6 C 1.52998 * 109.47409 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47409 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47409 * 180.02562 * 7 6 5 9 9 N 1.46897 * 109.47268 * 180.02562 * 8 7 6 10 10 C 1.46854 * 110.99665 * 293.95495 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84309 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 14 14 H 1.08999 * 109.50059 * 62.28737 * 13 12 11 15 15 C 1.50696 * 109.50007 * 182.40592 * 13 12 11 16 16 H 1.07997 * 120.00077 * 120.00524 * 15 13 12 17 17 C 1.37872 * 120.00039 * 299.99707 * 15 13 12 18 18 N 1.31516 * 120.00157 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 120.00148 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47149 * 89.99426 * 19 17 15 21 21 H 1.48504 * 109.47101 * 209.99746 * 19 17 15 22 22 H 1.48493 * 109.47009 * 329.99562 * 19 17 15 23 23 C 1.46844 * 111.00090 * 58.16171 * 9 8 7 24 24 H 1.08999 * 109.46702 * 299.99900 * 1 2 3 25 25 H 1.08997 * 109.47121 * 59.99770 * 1 2 3 26 26 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46719 * 240.00098 * 2 1 3 28 28 H 1.09004 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47280 * 300.00133 * 3 2 1 30 30 H 1.08999 * 109.47219 * 60.00417 * 3 2 1 31 31 H 1.08999 * 109.47139 * 304.99565 * 4 2 1 32 32 H 1.09004 * 109.47207 * 184.99888 * 4 2 1 33 33 H 1.08999 * 109.47199 * 59.99757 * 5 4 2 34 34 H 1.09004 * 109.46972 * 300.00187 * 5 4 2 35 35 H 1.08999 * 109.47139 * 59.99720 * 6 5 4 36 36 H 1.09004 * 109.47207 * 300.00043 * 6 5 4 37 37 H 1.08999 * 109.47199 * 59.99757 * 7 6 5 38 38 H 1.09004 * 109.46972 * 300.00187 * 7 6 5 39 39 H 1.08998 * 109.46651 * 59.99512 * 8 7 6 40 40 H 1.09003 * 109.46734 * 300.00278 * 8 7 6 41 41 H 1.08994 * 109.46310 * 65.82535 * 10 9 8 42 42 H 1.09004 * 109.45281 * 305.84691 * 10 9 8 43 43 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 44 44 H 1.09002 * 109.53848 * 60.77851 * 11 10 9 45 45 H 1.08998 * 109.52297 * 177.56592 * 12 11 10 46 46 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 47 47 H 0.96998 * 120.00706 * 180.02562 * 18 17 15 48 48 H 1.09002 * 109.46133 * 294.17882 * 23 9 8 49 49 H 1.09002 * 109.46165 * 54.15521 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1457 -2.9170 2.4368 7 6 1.7415 -4.3913 2.3752 8 6 2.2514 -5.1127 3.6244 9 7 1.8638 -6.5283 3.5650 10 6 0.4052 -6.6784 3.6458 11 6 0.0478 -8.1642 3.7277 12 6 0.5856 -8.8827 2.4870 13 6 2.0995 -8.6702 2.3999 14 1 2.5797 -9.1115 3.2732 15 6 2.6282 -9.3245 1.1496 16 1 3.1299 -8.7305 0.4001 17 6 2.4715 -10.6815 0.9626 18 7 2.9333 -11.2526 -0.1284 19 14 1.6032 -11.7088 2.2587 20 1 0.1484 -11.7516 1.9637 21 1 2.1517 -13.0888 2.2457 22 1 1.8193 -11.1029 3.5971 23 6 2.3974 -7.1697 2.3566 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 2.0698 -2.6550 0.3002 34 1 0.5488 -2.2724 1.1420 35 1 1.7115 -2.4576 3.3248 36 1 3.2321 -2.8401 2.4823 37 1 2.1760 -4.8505 1.4873 38 1 0.6551 -4.4686 2.3295 39 1 1.8165 -4.6534 4.5121 40 1 3.3377 -5.0353 3.6705 41 1 -0.0544 -6.2426 2.7588 42 1 0.0364 -6.1666 4.5347 43 1 -1.0355 -8.2760 3.7720 44 1 0.4953 -8.5980 4.6220 45 1 0.3710 -9.9487 2.5618 46 1 0.1088 -8.4758 1.5953 47 1 2.8228 -12.2072 -0.2602 48 1 1.9284 -6.7316 1.4756 49 1 3.4753 -7.0149 2.3090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = -42.626525 kcal Electronic energy + Delta-G solvation = -20944.343969 eV Core-core repulsion = 18097.458053 eV Total energy + Delta-G solvation = -2846.885915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.81992 -37.44089 -35.10401 -33.24264 -31.99097 -30.25445 -29.32891 -27.42561 -25.83056 -24.90526 -23.49854 -21.58442 -21.16860 -20.80616 -20.07798 -18.47949 -16.67012 -15.97774 -15.52455 -15.11180 -14.55474 -14.47945 -14.21081 -13.86316 -13.78736 -13.44202 -13.24452 -12.77357 -12.55176 -12.41792 -12.35453 -12.12919 -11.96691 -11.68408 -11.64778 -11.26185 -11.12403 -11.07459 -10.98366 -10.77746 -10.65149 -10.51709 -10.46352 -10.19524 -10.02111 -9.87893 -9.61583 -9.06186 -8.88834 -8.47980 -7.68449 -6.03751 -4.02518 3.31070 3.42190 3.46172 4.42766 4.45768 4.53540 4.64267 4.70842 4.94398 5.04294 5.17775 5.24959 5.28075 5.36404 5.44505 5.46801 5.51460 5.53772 5.56587 5.62810 5.67689 5.71643 5.78736 5.84188 5.86618 5.93398 5.95547 6.00482 6.05124 6.08734 6.16085 6.21840 6.25786 6.31625 6.33260 6.43845 6.44377 6.57940 6.66924 6.86154 6.88642 7.25590 7.47061 7.69177 7.70341 7.91961 8.56095 8.99604 9.59448 11.09591 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.003349 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.028615 B = 8357.503279 C = 8803.942335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.160 4.160 8 C 0.057 3.943 9 N -0.542 5.542 10 C 0.062 3.938 11 C -0.120 4.120 12 C -0.122 4.122 13 C 0.019 3.981 14 H 0.034 0.966 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.263 1.263 23 C 0.076 3.924 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.263 0.737 48 H 0.030 0.970 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 20.872 4.808 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.200 4.200 8 C -0.071 4.071 9 N -0.265 5.265 10 C -0.066 4.066 11 C -0.158 4.158 12 C -0.160 4.160 13 C 0.000 4.000 14 H 0.052 0.948 15 C -0.551 4.551 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.188 1.188 23 C -0.051 4.051 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.516 20.454 5.127 21.565 hybrid contribution -0.895 -0.279 -0.215 0.962 sum -5.411 20.176 4.912 21.458 Atomic orbital electron populations 1.21893 0.95378 1.01978 1.01395 1.21145 0.95908 0.96017 0.98749 1.21845 1.00897 0.96200 1.01525 1.21658 1.00695 0.95371 0.97429 1.21670 1.01094 0.94689 0.98491 1.21508 1.00837 0.95107 0.97663 1.22303 1.01372 0.95535 1.00743 1.22177 1.00642 0.87950 0.96373 1.62224 1.11007 1.12323 1.40904 1.21980 0.88347 0.96935 0.99332 1.21664 0.99018 0.95014 1.00132 1.22020 0.99691 0.98449 0.95805 1.19171 0.91286 0.91557 0.98023 0.94791 1.21013 1.37176 0.93278 1.03627 0.91009 1.24987 0.95170 0.97810 0.95191 1.69902 1.46726 1.11218 1.26355 0.86821 0.79257 0.78753 0.83286 1.20769 1.22679 1.18803 1.22088 0.98680 0.96037 0.88331 0.92874 0.93025 0.92295 0.91258 0.92779 0.92897 0.92850 0.92197 0.92099 0.92025 0.91968 0.92399 0.92123 0.91262 0.92175 0.91684 0.91111 0.95221 0.92128 0.92937 0.91911 0.93627 0.92639 0.92734 0.95206 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.95 37.16 0.33 -0.84 16 2 C -0.10 -0.81 2.92 -90.62 -0.26 -1.08 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.11 -0.98 4.68 -26.73 -0.13 -1.10 16 5 C -0.12 -1.20 4.97 -26.73 -0.13 -1.34 16 6 C -0.11 -1.19 5.21 -26.73 -0.14 -1.33 16 7 C -0.16 -2.08 4.52 -26.73 -0.12 -2.20 16 8 C 0.06 0.80 5.36 -3.83 -0.02 0.78 16 9 N -0.54 -9.50 4.86 -234.67 -1.14 -10.64 16 10 C 0.06 1.02 5.05 -3.83 -0.02 1.00 16 11 C -0.12 -2.17 6.09 -26.65 -0.16 -2.34 16 12 C -0.12 -2.69 4.73 -26.60 -0.13 -2.82 16 13 C 0.02 0.45 1.85 -91.69 -0.17 0.28 16 14 H 0.03 0.86 7.21 -51.93 -0.37 0.49 16 15 C -0.51 -14.52 9.15 -34.44 -0.31 -14.84 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 19 Si 0.89 22.44 24.35 -169.99 -4.14 18.30 16 20 H -0.28 -6.90 6.89 56.52 0.39 -6.52 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 23 C 0.08 1.55 4.06 -3.84 -0.02 1.53 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 27 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.03 6.50 -51.93 -0.34 0.69 16 38 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 39 H 0.06 0.82 8.06 -51.93 -0.42 0.41 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.03 0.48 6.75 -51.93 -0.35 0.13 16 42 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 46 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.03 0.62 6.61 -51.93 -0.34 0.28 16 49 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -29.58 358.78 -9.94 -39.53 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -9.81 Total: -2.33 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.03 Total: -23.07 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.37 Total: -37.83 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.58 -9.94 -39.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.101 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds