Wall clock time and date at job start Mon Mar 30 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 C 1.52998 * 109.46983 * 120.00325 * 2 1 3 5 5 C 1.53001 * 109.47409 * 64.99844 * 4 2 1 6 6 C 1.52998 * 109.47409 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47409 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47409 * 180.02562 * 7 6 5 9 9 N 1.46897 * 109.47268 * 180.02562 * 8 7 6 10 10 C 1.46854 * 110.99665 * 293.95495 * 9 8 7 11 11 C 1.53037 * 109.51886 * 185.84309 * 10 9 8 12 12 C 1.53126 * 109.27801 * 300.81620 * 11 10 9 13 13 C 1.53124 * 109.15878 * 57.65645 * 12 11 10 14 14 H 1.08999 * 109.50059 * 62.28737 * 13 12 11 15 15 C 1.50696 * 109.50007 * 182.40592 * 13 12 11 16 16 H 1.07997 * 120.00077 * 120.00524 * 15 13 12 17 17 C 1.37872 * 120.00039 * 299.99707 * 15 13 12 18 18 N 1.31516 * 120.00157 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 120.00148 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47149 * 89.99426 * 19 17 15 21 21 H 1.48504 * 109.47101 * 209.99746 * 19 17 15 22 22 H 1.48493 * 109.47009 * 329.99562 * 19 17 15 23 23 C 1.46844 * 111.00090 * 58.16171 * 9 8 7 24 24 H 1.08999 * 109.46702 * 299.99900 * 1 2 3 25 25 H 1.08997 * 109.47121 * 59.99770 * 1 2 3 26 26 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46719 * 240.00098 * 2 1 3 28 28 H 1.09004 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47280 * 300.00133 * 3 2 1 30 30 H 1.08999 * 109.47219 * 60.00417 * 3 2 1 31 31 H 1.08999 * 109.47139 * 304.99565 * 4 2 1 32 32 H 1.09004 * 109.47207 * 184.99888 * 4 2 1 33 33 H 1.08999 * 109.47199 * 59.99757 * 5 4 2 34 34 H 1.09004 * 109.46972 * 300.00187 * 5 4 2 35 35 H 1.08999 * 109.47139 * 59.99720 * 6 5 4 36 36 H 1.09004 * 109.47207 * 300.00043 * 6 5 4 37 37 H 1.08999 * 109.47199 * 59.99757 * 7 6 5 38 38 H 1.09004 * 109.46972 * 300.00187 * 7 6 5 39 39 H 1.08998 * 109.46651 * 59.99512 * 8 7 6 40 40 H 1.09003 * 109.46734 * 300.00278 * 8 7 6 41 41 H 1.08994 * 109.46310 * 65.82535 * 10 9 8 42 42 H 1.09004 * 109.45281 * 305.84691 * 10 9 8 43 43 H 1.09000 * 109.50480 * 180.88135 * 11 10 9 44 44 H 1.09002 * 109.53848 * 60.77851 * 11 10 9 45 45 H 1.08998 * 109.52297 * 177.56592 * 12 11 10 46 46 H 1.08999 * 109.51925 * 297.75795 * 12 11 10 47 47 H 0.96998 * 120.00706 * 180.02562 * 18 17 15 48 48 H 1.09002 * 109.46133 * 294.17882 * 23 9 8 49 49 H 1.09002 * 109.46165 * 54.15521 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1457 -2.9170 2.4368 7 6 1.7415 -4.3913 2.3752 8 6 2.2514 -5.1127 3.6244 9 7 1.8638 -6.5283 3.5650 10 6 0.4052 -6.6784 3.6458 11 6 0.0478 -8.1642 3.7277 12 6 0.5856 -8.8827 2.4870 13 6 2.0995 -8.6702 2.3999 14 1 2.5797 -9.1115 3.2732 15 6 2.6282 -9.3245 1.1496 16 1 3.1299 -8.7305 0.4001 17 6 2.4715 -10.6815 0.9626 18 7 2.9333 -11.2526 -0.1284 19 14 1.6032 -11.7088 2.2587 20 1 0.1484 -11.7516 1.9637 21 1 2.1517 -13.0888 2.2457 22 1 1.8193 -11.1029 3.5971 23 6 2.3974 -7.1697 2.3566 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 2.0698 -2.6550 0.3002 34 1 0.5488 -2.2724 1.1420 35 1 1.7115 -2.4576 3.3248 36 1 3.2321 -2.8401 2.4823 37 1 2.1760 -4.8505 1.4873 38 1 0.6551 -4.4686 2.3295 39 1 1.8165 -4.6534 4.5121 40 1 3.3377 -5.0353 3.6705 41 1 -0.0544 -6.2426 2.7588 42 1 0.0364 -6.1666 4.5347 43 1 -1.0355 -8.2760 3.7720 44 1 0.4953 -8.5980 4.6220 45 1 0.3710 -9.9487 2.5618 46 1 0.1088 -8.4758 1.5953 47 1 2.8228 -12.2072 -0.2602 48 1 1.9284 -6.7316 1.4756 49 1 3.4753 -7.0149 2.3090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:39 Heat of formation + Delta-G solvation = -59.122224 kcal Electronic energy + Delta-G solvation = -20945.059276 eV Core-core repulsion = 18097.458053 eV Total energy + Delta-G solvation = -2847.601223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24902 -38.21542 -36.41178 -34.81176 -33.57459 -32.00836 -30.35747 -28.02021 -27.09332 -26.72419 -24.67319 -23.07099 -22.35364 -22.03329 -20.79298 -20.01929 -18.81712 -17.20954 -16.80540 -16.04061 -15.92377 -15.74702 -15.44484 -15.14352 -14.94445 -14.78914 -14.63693 -14.32007 -13.91402 -13.59848 -13.37677 -13.06242 -12.99063 -12.90384 -12.74752 -12.62241 -12.46273 -12.29716 -12.08989 -11.89941 -11.82332 -11.76496 -11.50670 -11.44188 -11.36700 -11.23088 -11.15340 -10.99417 -10.79808 -10.60774 -9.06332 -8.31166 -6.34603 1.29041 1.35574 1.47088 2.32324 3.04623 3.13582 3.72086 3.93307 4.03265 4.04939 4.06188 4.13499 4.22139 4.25142 4.35043 4.38366 4.50821 4.60346 4.67788 4.71228 4.72043 4.78985 4.79819 4.81914 4.85653 4.92910 4.96926 5.01082 5.02184 5.05165 5.07488 5.11278 5.15348 5.18107 5.26574 5.29266 5.36698 5.38926 5.45647 5.46248 5.56118 5.56909 5.63993 5.73681 6.18515 6.32497 6.38710 6.72969 7.31174 8.85854 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.003349 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.028615 B = 8357.503279 C = 8803.942335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.153 4.153 8 C 0.058 3.942 9 N -0.549 5.549 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.122 4.122 13 C 0.018 3.982 14 H 0.022 0.978 15 C -0.519 4.519 16 H 0.031 0.969 17 C 0.012 3.988 18 N -0.951 5.951 19 Si 0.953 3.047 20 H -0.266 1.266 21 H -0.299 1.299 22 H -0.248 1.248 23 C 0.090 3.910 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.046 0.954 47 H 0.266 0.734 48 H 0.020 0.980 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 22.467 7.329 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.192 4.192 8 C -0.070 4.070 9 N -0.272 5.272 10 C -0.066 4.066 11 C -0.153 4.153 12 C -0.160 4.160 13 C -0.001 4.001 14 H 0.041 0.959 15 C -0.558 4.558 16 H 0.049 0.951 17 C -0.185 4.185 18 N -0.592 5.592 19 Si 0.780 3.220 20 H -0.193 1.193 21 H -0.227 1.227 22 H -0.172 1.172 23 C -0.038 4.038 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.222 22.081 7.660 24.186 hybrid contribution -0.304 -0.712 -1.074 1.324 sum -6.526 21.369 6.586 23.293 Atomic orbital electron populations 1.21884 0.95126 1.01638 1.01910 1.21155 0.96150 0.96578 0.98154 1.21825 1.00963 0.95472 1.02015 1.21613 1.00739 0.94351 0.97958 1.21634 1.00940 0.95538 0.97627 1.21453 1.00994 0.93398 0.98549 1.22201 1.01012 0.96934 0.99061 1.22271 1.00913 0.86038 0.97780 1.62171 1.12053 1.14461 1.38563 1.22066 0.87380 0.96164 1.00971 1.21649 1.00704 0.95490 0.97493 1.21920 0.97824 0.98345 0.97910 1.19090 0.92759 0.93362 0.94874 0.95941 1.21343 1.36516 0.93416 1.04486 0.95068 1.25859 0.96076 0.99190 0.97357 1.70049 1.48709 1.11734 1.28686 0.85775 0.78598 0.76671 0.80981 1.19258 1.22699 1.17203 1.21737 0.98101 0.94230 0.89736 0.92279 0.92617 0.93038 0.92223 0.92690 0.92494 0.92290 0.91377 0.92102 0.93548 0.91983 0.90738 0.92052 0.93975 0.92197 0.89038 0.91218 0.95095 0.88738 0.89980 0.91881 0.94759 0.93475 0.92557 0.96184 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.95 71.98 0.64 -1.50 16 2 C -0.10 -1.54 2.92 -10.80 -0.03 -1.57 16 3 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 4 C -0.11 -1.70 4.68 30.59 0.14 -1.56 16 5 C -0.12 -2.24 4.97 30.59 0.15 -2.09 16 6 C -0.11 -2.02 5.21 30.59 0.16 -1.86 16 7 C -0.15 -3.76 4.52 30.59 0.14 -3.62 16 8 C 0.06 1.48 5.36 86.30 0.46 1.94 16 9 N -0.55 -18.15 4.86 -896.36 -4.35 -22.50 16 10 C 0.06 1.81 5.05 86.32 0.44 2.24 16 11 C -0.12 -3.79 6.09 30.65 0.19 -3.60 16 12 C -0.12 -5.23 4.73 30.68 0.15 -5.09 16 13 C 0.02 0.88 1.85 -11.49 -0.02 0.86 16 14 H 0.02 1.13 7.21 -2.39 -0.02 1.12 16 15 C -0.52 -30.53 9.15 25.60 0.23 -30.30 16 16 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 17 C 0.01 0.71 5.45 84.65 0.46 1.17 16 18 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 19 Si 0.95 46.53 24.35 68.60 1.67 48.20 16 20 H -0.27 -12.33 6.89 99.48 0.69 -11.65 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.25 -11.40 6.53 99.48 0.65 -10.75 16 23 C 0.09 3.71 4.06 86.33 0.35 4.06 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.81 6.57 -2.39 -0.02 0.79 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.16 6.57 -2.38 -0.02 1.15 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.04 1.26 6.50 -2.39 -0.02 1.24 16 38 H 0.06 1.47 6.68 -2.38 -0.02 1.46 16 39 H 0.09 1.93 8.06 -2.39 -0.02 1.91 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 0.91 6.75 -2.39 -0.02 0.90 16 42 H 0.09 2.20 8.06 -2.38 -0.02 2.19 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.03 1.53 3.34 -2.39 -0.01 1.52 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 48 H 0.02 0.86 6.61 -2.39 -0.02 0.84 16 49 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 Total: -1.00 -65.47 358.78 2.52 -62.96 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.78 Total: 14.04 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 4.12 Total: -42.10 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -4.06 Total: -83.09 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.67 Total: 48.20 kcal Total: -65.47 2.52 -62.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.837 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds