Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 C 1.52999 * 109.47155 * 119.99820 * 2 1 3 5 5 C 1.52999 * 109.46926 * 174.99982 * 4 2 1 6 6 C 1.53008 * 109.46965 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46965 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46926 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47036 * 179.97438 * 8 7 6 10 10 C 1.46847 * 110.99862 * 66.05037 * 9 8 7 11 11 C 1.53044 * 109.51335 * 174.15436 * 10 9 8 12 12 C 1.53119 * 109.27589 * 59.18419 * 11 10 9 13 13 C 1.53120 * 109.16202 * 302.34077 * 12 11 10 14 14 H 1.08996 * 109.50004 * 297.72216 * 13 12 11 15 15 C 1.50697 * 109.50290 * 177.63586 * 13 12 11 16 16 H 1.07997 * 120.00495 * 240.00286 * 15 13 12 17 17 C 1.37880 * 119.99487 * 60.00267 * 15 13 12 18 18 N 1.31518 * 120.00428 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99610 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46967 * 60.00324 * 19 17 15 21 21 H 1.48503 * 109.46839 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47286 * 300.00184 * 19 17 15 23 23 C 1.46847 * 110.99299 * 301.84195 * 9 8 7 24 24 H 1.08997 * 109.46925 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46830 * 60.00010 * 1 2 3 26 26 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46715 * 240.00245 * 2 1 3 28 28 H 1.08997 * 109.47582 * 60.00136 * 3 2 1 29 29 H 1.09003 * 109.46985 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47405 * 299.99638 * 3 2 1 31 31 H 1.08999 * 109.46741 * 55.00064 * 4 2 1 32 32 H 1.08996 * 109.47358 * 295.00562 * 4 2 1 33 33 H 1.08999 * 109.47343 * 60.00451 * 5 4 2 34 34 H 1.08997 * 109.47326 * 299.99706 * 5 4 2 35 35 H 1.08999 * 109.46834 * 60.00002 * 6 5 4 36 36 H 1.08996 * 109.46703 * 300.00477 * 6 5 4 37 37 H 1.08999 * 109.47343 * 60.00314 * 7 6 5 38 38 H 1.08997 * 109.47101 * 300.00074 * 7 6 5 39 39 H 1.09004 * 109.47161 * 60.00228 * 8 7 6 40 40 H 1.08996 * 109.47358 * 300.00580 * 8 7 6 41 41 H 1.09002 * 109.46448 * 54.14158 * 10 9 8 42 42 H 1.08994 * 109.45958 * 294.16523 * 10 9 8 43 43 H 1.09000 * 109.49745 * 179.12223 * 11 10 9 44 44 H 1.08999 * 109.49729 * 299.20033 * 11 10 9 45 45 H 1.08993 * 109.52284 * 62.25342 * 12 11 10 46 46 H 1.09003 * 109.51690 * 182.37761 * 12 11 10 47 47 H 0.97001 * 119.99568 * 179.97438 * 18 17 15 48 48 H 1.09005 * 109.46836 * 65.83946 * 23 9 8 49 49 H 1.08995 * 109.45748 * 305.85482 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 6 4.0749 -1.5528 2.4369 7 6 5.5997 -1.6631 2.3753 8 6 6.1097 -2.3843 3.6246 9 7 7.5736 -2.4908 3.5651 10 6 8.2013 -1.1657 3.6460 11 6 9.7213 -1.3243 3.7280 12 6 10.2193 -2.0707 2.4874 13 6 9.5142 -3.4271 2.4001 14 1 9.7700 -4.0270 3.2735 15 6 9.9556 -4.1441 1.1503 16 1 9.2288 -4.4192 0.4003 17 6 11.2873 -4.4489 0.9643 18 7 12.1724 -4.1144 1.8778 19 14 11.8344 -5.3383 -0.5847 20 1 11.4837 -4.5217 -1.7743 21 1 13.3040 -5.5471 -0.5426 22 1 11.1502 -6.6537 -0.6680 23 6 8.0003 -3.2077 2.3566 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6055 -1.7197 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9995 0.1676 1.1420 34 1 3.8533 -1.3940 0.3003 35 1 3.6402 -2.5513 2.4824 36 1 3.7864 -0.9902 3.3248 37 1 6.0347 -0.6647 2.3296 38 1 5.8876 -2.2259 1.4874 39 1 5.6747 -3.3828 3.6707 40 1 5.8216 -1.8212 4.5122 41 1 7.8417 -0.6472 4.5348 42 1 7.9438 -0.5872 2.7589 43 1 10.1878 -0.3402 3.7724 44 1 9.9803 -1.8905 4.6227 45 1 9.9950 -1.4855 1.5957 46 1 11.2961 -2.2230 2.5618 47 1 13.1092 -4.3293 1.7470 48 1 7.7438 -2.6193 1.4756 49 1 7.4947 -4.1721 2.3091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -50.273053 kcal Electronic energy + Delta-G solvation = -20873.048254 eV Core-core repulsion = 18025.830760 eV Total energy + Delta-G solvation = -2847.217494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.59790 -37.39374 -34.93462 -33.22967 -31.71867 -29.82813 -29.12590 -27.41873 -25.59419 -24.90046 -23.25121 -21.49428 -21.15592 -20.73283 -20.05276 -18.20752 -16.34545 -15.94980 -15.12439 -14.97960 -14.55946 -14.41117 -14.14170 -13.89623 -13.66463 -13.26731 -12.95979 -12.56489 -12.48982 -12.33830 -12.12530 -11.97509 -11.78159 -11.60144 -11.42637 -11.21070 -10.99076 -10.92958 -10.81376 -10.76252 -10.63378 -10.53246 -10.41644 -10.27849 -9.95700 -9.75757 -9.40899 -8.97637 -8.66187 -8.26124 -7.51339 -5.93634 -3.99769 3.34308 3.38900 3.41355 4.43363 4.49082 4.64823 4.69305 4.72566 4.97617 5.08163 5.21386 5.29321 5.36096 5.37588 5.46087 5.54561 5.57743 5.58586 5.66104 5.73959 5.77209 5.81151 5.86846 5.94987 5.97003 5.99398 6.02909 6.10173 6.13057 6.18342 6.28249 6.30376 6.44842 6.46304 6.54661 6.59511 6.78710 6.82372 7.04003 7.27420 7.46189 7.74463 7.79752 7.91243 8.13850 8.22398 8.52967 9.04327 9.64213 11.12306 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003409 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.891360 B = 8210.876857 C = 8978.775926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.159 4.159 8 C 0.056 3.944 9 N -0.539 5.539 10 C 0.062 3.938 11 C -0.118 4.118 12 C -0.110 4.110 13 C 0.054 3.946 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.052 0.948 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.067 3.933 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.090 0.910 47 H 0.260 0.740 48 H 0.022 0.978 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 8.944 0.107 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.198 4.198 8 C -0.072 4.072 9 N -0.261 5.261 10 C -0.066 4.066 11 C -0.156 4.156 12 C -0.148 4.148 13 C 0.035 3.965 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.070 0.930 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.060 4.060 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.999 8.653 0.565 19.979 hybrid contribution 0.057 0.039 -1.615 1.616 sum -17.942 8.692 -1.050 19.964 Atomic orbital electron populations 1.21848 0.95515 1.01574 1.01529 1.21145 0.95431 0.96491 0.98736 1.21894 1.01430 0.95932 1.01397 1.21659 0.95847 1.00227 0.97428 1.21670 0.94959 1.00796 0.98491 1.21514 0.95657 1.00336 0.97618 1.22294 0.95322 1.01425 1.00804 1.22185 0.88913 0.99936 0.96214 1.62220 1.05010 1.17985 1.40918 1.22020 0.96125 0.89754 0.98692 1.21685 0.93382 0.99285 1.01250 1.21644 1.03772 0.96401 0.93008 1.18663 0.87447 0.93193 0.97179 0.94924 1.21123 0.92781 1.36936 1.04470 0.92957 1.24936 0.96788 0.95781 0.96345 1.69887 1.01967 1.47028 1.33895 0.86701 0.77431 0.80299 0.83790 1.20400 1.21332 1.20311 1.22301 0.99807 0.95897 0.88015 0.92829 0.92912 0.92794 0.91307 0.92847 0.92284 0.93043 0.92124 0.92169 0.91960 0.92112 0.92193 0.92392 0.92200 0.91432 0.91356 0.91835 0.92686 0.95734 0.93682 0.92185 0.95267 0.89178 0.93041 0.95954 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.82 2.92 -90.62 -0.26 -1.09 16 3 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 4 C -0.11 -1.01 4.68 -26.73 -0.13 -1.13 16 5 C -0.12 -1.24 4.97 -26.73 -0.13 -1.38 16 6 C -0.11 -1.25 5.21 -26.73 -0.14 -1.39 16 7 C -0.16 -2.20 4.52 -26.73 -0.12 -2.32 16 8 C 0.06 0.85 5.36 -3.83 -0.02 0.83 16 9 N -0.54 -10.20 4.86 -234.67 -1.14 -11.34 16 10 C 0.06 1.12 5.05 -3.83 -0.02 1.10 16 11 C -0.12 -2.37 6.09 -26.65 -0.16 -2.54 16 12 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 13 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.51 -14.30 8.57 -34.44 -0.30 -14.60 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.68 11.35 55.43 0.63 -25.05 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.44 4.06 -3.83 -0.02 1.43 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 6.57 -51.93 -0.34 0.30 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 38 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 41 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 42 H 0.02 0.44 6.76 -51.93 -0.35 0.09 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.49 6.61 -51.93 -0.34 0.14 16 49 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -27.98 365.63 -11.02 -39.00 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.94 Total: -1.92 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.06 Total: -22.64 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.51 Total: -36.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.98 -11.02 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds