Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 C 1.53007 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46818 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46761 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46939 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.46996 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46818 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46800 * 179.97438 * 9 8 7 11 11 C 1.47439 * 111.00045 * 290.12836 * 10 9 8 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 15 15 C 1.50700 * 111.05809 * 153.64741 * 13 12 11 16 16 H 1.08005 * 119.99878 * 247.58223 * 15 13 12 17 17 C 1.37869 * 119.99802 * 67.58770 * 15 13 12 18 18 N 1.31518 * 120.00171 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46926 * 60.00056 * 19 17 15 21 21 H 1.48504 * 109.47030 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47259 * 299.99923 * 19 17 15 23 23 C 1.47843 * 110.99640 * 169.28128 * 10 9 8 24 24 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47027 * 299.99990 * 1 2 3 26 26 H 1.08989 * 109.47312 * 60.00214 * 1 2 3 27 27 H 1.08998 * 109.47459 * 239.99921 * 2 1 3 28 28 H 1.09003 * 109.47552 * 119.99882 * 2 1 3 29 29 H 1.08991 * 109.47459 * 59.99848 * 3 2 1 30 30 H 1.09000 * 109.46725 * 299.99531 * 3 2 1 31 31 H 1.08997 * 109.46915 * 59.99615 * 4 3 2 32 32 H 1.09006 * 109.46832 * 299.99668 * 4 3 2 33 33 H 1.09004 * 109.47094 * 60.00101 * 5 4 3 34 34 H 1.08996 * 109.46905 * 299.99871 * 5 4 3 35 35 H 1.08998 * 109.47459 * 60.00224 * 6 5 4 36 36 H 1.09003 * 109.47552 * 300.00185 * 6 5 4 37 37 H 1.08991 * 109.47459 * 59.99848 * 7 6 5 38 38 H 1.09000 * 109.46725 * 299.99531 * 7 6 5 39 39 H 1.08997 * 109.46915 * 59.99615 * 8 7 6 40 40 H 1.08999 * 109.46631 * 300.00004 * 8 7 6 41 41 H 1.09004 * 109.47094 * 60.00101 * 9 8 7 42 42 H 1.08996 * 109.46905 * 299.99871 * 9 8 7 43 43 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 44 44 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 45 45 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 46 46 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 47 47 H 0.97004 * 119.99744 * 179.97438 * 18 17 15 48 48 H 1.08996 * 110.37823 * 265.19398 * 23 10 9 49 49 H 1.09001 * 110.37314 * 27.42672 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8851 -0.0013 7 6 6.1199 4.3277 -0.0013 8 6 7.6500 4.3277 -0.0019 9 6 8.1599 5.7702 -0.0026 10 7 9.6289 5.7702 -0.0026 11 6 10.1573 5.2971 1.2900 12 6 11.0781 6.4045 1.8444 13 6 11.4646 7.2048 0.5696 14 1 12.2900 6.7240 0.0447 15 6 11.8035 8.6334 0.9091 16 1 11.1610 9.4348 0.5751 17 6 12.9336 8.9174 1.6460 18 7 13.7156 7.9415 2.0531 19 14 13.3540 10.6883 2.0663 20 1 12.2492 11.2844 2.8596 21 1 14.6084 10.7242 2.8604 22 1 13.5383 11.4640 0.8135 23 6 10.1586 7.1263 -0.2599 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.7169 3.3992 0.8887 34 1 3.7162 3.3986 -0.8913 35 1 5.9733 2.3709 -0.8910 36 1 5.9733 2.3716 0.8889 37 1 5.7566 4.8415 0.8886 38 1 5.7566 4.8414 -0.8913 39 1 8.0129 3.8139 -0.8921 40 1 8.0136 3.8137 0.8878 41 1 7.7969 6.2843 0.8874 42 1 7.7961 6.2837 -0.8926 43 1 9.3354 5.1168 1.9830 44 1 10.7272 4.3795 1.1441 45 1 10.5381 7.0384 2.5479 46 1 11.9617 5.9719 2.3136 47 1 14.5110 8.1413 2.5712 48 1 10.3745 7.2545 -1.3205 49 1 9.4478 7.8814 0.0759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397694517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -56.292165 kcal Electronic energy + Delta-G solvation = -19779.657983 eV Core-core repulsion = 16932.179481 eV Total energy + Delta-G solvation = -2847.478502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.23222 -37.12194 -35.33570 -33.42313 -32.24914 -30.35566 -28.26370 -28.18166 -25.63102 -24.10983 -22.69636 -21.47625 -21.08732 -20.82109 -19.64461 -19.30318 -16.43148 -16.37602 -15.63923 -15.02259 -14.74278 -14.39291 -14.38669 -14.05799 -13.71212 -13.39449 -13.07328 -12.67241 -12.45053 -12.34098 -12.17086 -12.04476 -11.60530 -11.50203 -11.42508 -11.15542 -11.09778 -10.99930 -10.87120 -10.80915 -10.76526 -10.69144 -10.55799 -10.36289 -10.23504 -9.99331 -9.59528 -9.17996 -8.84655 -8.37320 -7.55448 -6.01171 -4.04374 3.32091 3.36765 3.39191 4.31504 4.43090 4.56758 4.67497 4.73173 4.81571 4.97328 5.04031 5.06767 5.26306 5.30250 5.32181 5.38351 5.43558 5.51767 5.55999 5.63714 5.68654 5.72945 5.75541 5.81456 5.85159 5.91853 5.96127 5.98123 6.04138 6.08071 6.12031 6.20148 6.24503 6.29252 6.44447 6.52068 6.57241 6.58640 6.87157 7.16588 7.19766 7.62809 7.74631 7.80436 7.93100 8.03915 8.44562 8.98062 9.59650 11.08835 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.060757 B = 0.002118 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.738353 B =13217.997474 C =13315.944822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.113 4.113 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.040 3.960 12 C -0.121 4.121 13 C 0.049 3.951 14 H 0.040 0.960 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.046 3.954 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.261 0.739 48 H 0.060 0.940 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.200 -13.258 -3.293 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.076 4.076 10 N -0.260 5.260 11 C -0.088 4.088 12 C -0.160 4.160 13 C 0.030 3.970 14 H 0.058 0.942 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.081 4.081 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.875 -13.633 -3.587 25.189 hybrid contribution -0.013 1.510 0.993 1.807 sum -20.888 -12.123 -2.594 24.290 Atomic orbital electron populations 1.21783 0.96034 1.01488 1.01772 1.21550 0.95739 0.97133 1.01958 1.21640 0.95685 0.96560 1.01983 1.21626 0.95081 0.97141 1.02008 1.21617 0.95782 0.96451 1.01922 1.21593 0.94863 0.97132 1.02020 1.21574 0.95894 0.96413 1.01766 1.21580 0.94006 0.97110 1.02419 1.22206 0.89361 0.96100 0.99913 1.63590 1.05871 1.25071 1.31515 1.22884 0.97512 0.99270 0.89105 1.22770 0.97690 0.95471 1.00038 1.19777 0.91190 0.95386 0.90690 0.94171 1.21015 1.08498 0.91803 1.34068 0.92703 1.24973 0.96088 0.96981 0.95772 1.69960 1.14416 1.31211 1.37042 0.86677 0.77633 0.85305 0.78474 1.20367 1.21293 1.20220 1.23158 0.98185 0.86806 0.99940 0.92894 0.92803 0.92802 0.92114 0.92112 0.92107 0.92114 0.92089 0.92093 0.92166 0.92138 0.92055 0.92137 0.92336 0.92185 0.91513 0.92212 0.95454 0.91788 0.94623 0.92098 0.93507 0.91247 0.92979 0.92138 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.83 5.22 -26.73 -0.14 -0.97 16 4 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 5 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 6 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 7 C -0.12 -1.29 5.22 -26.73 -0.14 -1.43 16 8 C -0.11 -1.52 5.24 -26.73 -0.14 -1.66 16 9 C 0.05 0.86 4.54 -3.82 -0.02 0.84 16 10 N -0.54 -10.55 5.16 -231.24 -1.19 -11.74 16 11 C 0.04 0.80 6.20 -2.84 -0.02 0.78 16 12 C -0.12 -2.88 5.91 -24.77 -0.15 -3.02 16 13 C 0.05 1.25 2.84 -89.49 -0.25 0.99 16 14 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.52 -14.34 8.50 -34.44 -0.29 -14.64 16 16 H 0.05 1.50 7.77 -52.48 -0.41 1.09 16 17 C 0.06 1.79 5.37 -17.82 -0.10 1.69 16 18 N -0.89 -25.78 12.61 55.43 0.70 -25.08 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.05 1.01 6.13 -2.29 -0.01 1.00 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.94 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.83 7.14 -51.93 -0.37 0.46 16 41 H 0.03 0.46 7.96 -51.93 -0.41 0.04 16 42 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 43 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 46 H 0.07 1.76 7.84 -51.93 -0.41 1.35 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.03 0.74 7.69 -51.93 -0.40 0.34 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -28.13 379.71 -11.62 -39.75 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -10.36 Total: -3.75 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -1.47 Total: -21.30 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.49 Total: -36.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.13 -11.62 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.542 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds