Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 C 1.53007 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46818 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46761 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46939 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.46996 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46818 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46800 * 179.97438 * 9 8 7 11 11 C 1.47439 * 111.00045 * 290.12836 * 10 9 8 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 15 15 C 1.50700 * 111.05809 * 153.64741 * 13 12 11 16 16 H 1.08005 * 119.99878 * 247.58223 * 15 13 12 17 17 C 1.37869 * 119.99802 * 67.58770 * 15 13 12 18 18 N 1.31518 * 120.00171 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46926 * 60.00056 * 19 17 15 21 21 H 1.48504 * 109.47030 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47259 * 299.99923 * 19 17 15 23 23 C 1.47843 * 110.99640 * 169.28128 * 10 9 8 24 24 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47027 * 299.99990 * 1 2 3 26 26 H 1.08989 * 109.47312 * 60.00214 * 1 2 3 27 27 H 1.08998 * 109.47459 * 239.99921 * 2 1 3 28 28 H 1.09003 * 109.47552 * 119.99882 * 2 1 3 29 29 H 1.08991 * 109.47459 * 59.99848 * 3 2 1 30 30 H 1.09000 * 109.46725 * 299.99531 * 3 2 1 31 31 H 1.08997 * 109.46915 * 59.99615 * 4 3 2 32 32 H 1.09006 * 109.46832 * 299.99668 * 4 3 2 33 33 H 1.09004 * 109.47094 * 60.00101 * 5 4 3 34 34 H 1.08996 * 109.46905 * 299.99871 * 5 4 3 35 35 H 1.08998 * 109.47459 * 60.00224 * 6 5 4 36 36 H 1.09003 * 109.47552 * 300.00185 * 6 5 4 37 37 H 1.08991 * 109.47459 * 59.99848 * 7 6 5 38 38 H 1.09000 * 109.46725 * 299.99531 * 7 6 5 39 39 H 1.08997 * 109.46915 * 59.99615 * 8 7 6 40 40 H 1.08999 * 109.46631 * 300.00004 * 8 7 6 41 41 H 1.09004 * 109.47094 * 60.00101 * 9 8 7 42 42 H 1.08996 * 109.46905 * 299.99871 * 9 8 7 43 43 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 44 44 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 45 45 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 46 46 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 47 47 H 0.97004 * 119.99744 * 179.97438 * 18 17 15 48 48 H 1.08996 * 110.37823 * 265.19398 * 23 10 9 49 49 H 1.09001 * 110.37314 * 27.42672 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8851 -0.0013 7 6 6.1199 4.3277 -0.0013 8 6 7.6500 4.3277 -0.0019 9 6 8.1599 5.7702 -0.0026 10 7 9.6289 5.7702 -0.0026 11 6 10.1573 5.2971 1.2900 12 6 11.0781 6.4045 1.8444 13 6 11.4646 7.2048 0.5696 14 1 12.2900 6.7240 0.0447 15 6 11.8035 8.6334 0.9091 16 1 11.1610 9.4348 0.5751 17 6 12.9336 8.9174 1.6460 18 7 13.7156 7.9415 2.0531 19 14 13.3540 10.6883 2.0663 20 1 12.2492 11.2844 2.8596 21 1 14.6084 10.7242 2.8604 22 1 13.5383 11.4640 0.8135 23 6 10.1586 7.1263 -0.2599 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.7169 3.3992 0.8887 34 1 3.7162 3.3986 -0.8913 35 1 5.9733 2.3709 -0.8910 36 1 5.9733 2.3716 0.8889 37 1 5.7566 4.8415 0.8886 38 1 5.7566 4.8414 -0.8913 39 1 8.0129 3.8139 -0.8921 40 1 8.0136 3.8137 0.8878 41 1 7.7969 6.2843 0.8874 42 1 7.7961 6.2837 -0.8926 43 1 9.3354 5.1168 1.9830 44 1 10.7272 4.3795 1.1441 45 1 10.5381 7.0384 2.5479 46 1 11.9617 5.9719 2.3136 47 1 14.5110 8.1413 2.5712 48 1 10.3745 7.2545 -1.3205 49 1 9.4478 7.8814 0.0759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397694517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -69.069983 kcal Electronic energy + Delta-G solvation = -19780.212071 eV Core-core repulsion = 16932.179481 eV Total energy + Delta-G solvation = -2848.032590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85189 -37.84138 -36.26788 -35.01882 -33.54692 -31.67105 -30.00913 -29.34283 -26.88436 -25.72309 -23.74503 -22.35489 -21.85703 -21.64699 -21.35843 -20.93141 -18.47482 -17.16724 -16.82716 -16.62664 -16.10663 -15.99133 -15.07181 -15.03419 -14.55549 -14.49836 -14.25717 -14.02421 -13.99482 -13.54398 -13.23385 -13.06847 -12.99988 -12.80556 -12.72001 -12.46905 -12.31167 -12.28891 -12.04306 -11.87463 -11.81006 -11.68847 -11.54007 -11.52967 -11.34206 -11.27315 -11.22248 -10.93406 -10.88940 -10.50286 -9.16039 -8.15422 -6.26239 1.40807 1.42394 1.50193 2.41304 3.14323 3.18652 3.74745 3.98387 4.04985 4.09021 4.13936 4.17059 4.26409 4.35051 4.37591 4.45984 4.53423 4.55145 4.62120 4.69146 4.74171 4.80144 4.83496 4.84568 4.88958 4.99118 4.99888 5.03508 5.08237 5.11801 5.19996 5.21818 5.23617 5.24626 5.30793 5.32660 5.41655 5.44292 5.51669 5.55971 5.57293 5.59542 5.76477 5.88965 6.06332 6.35412 6.36265 6.83275 7.41617 8.94119 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.060757 B = 0.002118 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.738353 B =13217.997474 C =13315.944822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.105 4.105 9 C 0.051 3.949 10 N -0.540 5.540 11 C 0.051 3.949 12 C -0.113 4.113 13 C 0.038 3.962 14 H 0.006 0.994 15 C -0.536 4.536 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.958 3.042 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.058 3.942 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.262 0.738 48 H 0.064 0.936 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.867 -13.271 -3.472 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.143 4.143 9 C -0.077 4.077 10 N -0.264 5.264 11 C -0.076 4.076 12 C -0.152 4.152 13 C 0.019 3.981 14 H 0.024 0.976 15 C -0.574 4.574 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.783 3.217 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.069 4.069 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.561 -13.651 -3.775 26.638 hybrid contribution 0.510 1.492 1.028 1.882 sum -22.051 -12.159 -2.747 25.330 Atomic orbital electron populations 1.21786 0.95609 1.01855 1.01851 1.21553 0.96144 0.96780 1.01957 1.21618 0.95213 0.96899 1.01949 1.21598 0.95493 0.96591 1.01950 1.21577 0.94866 0.96977 1.02005 1.21551 0.95648 0.96065 1.01995 1.21517 0.93903 0.97492 1.02097 1.21507 0.95694 0.94914 1.02149 1.22344 0.86903 0.98191 1.00257 1.63605 1.08255 1.23384 1.31136 1.22766 0.97449 0.97852 0.89563 1.22574 0.97440 0.96263 0.98950 1.19739 0.91944 0.94537 0.91928 0.97626 1.21370 1.08902 0.92893 1.34234 0.92680 1.25794 0.95967 1.01232 0.95608 1.70090 1.14776 1.33288 1.37592 0.85618 0.77486 0.80166 0.78431 1.19618 1.20895 1.19429 1.22932 0.96327 0.88198 0.99446 0.92419 0.92772 0.92685 0.92068 0.92176 0.92206 0.92067 0.92058 0.92245 0.92210 0.91922 0.91953 0.92324 0.92263 0.91609 0.91661 0.92598 0.95670 0.90852 0.92450 0.91492 0.94706 0.93623 0.92960 0.91729 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.43 5.93 30.60 0.18 -1.25 16 3 C -0.12 -1.45 5.22 30.60 0.16 -1.29 16 4 C -0.12 -1.58 5.21 30.60 0.16 -1.42 16 5 C -0.12 -1.70 5.21 30.59 0.16 -1.54 16 6 C -0.11 -1.93 5.21 30.60 0.16 -1.78 16 7 C -0.11 -2.18 5.22 30.60 0.16 -2.02 16 8 C -0.10 -2.58 5.24 30.60 0.16 -2.42 16 9 C 0.05 1.55 4.54 86.30 0.39 1.95 16 10 N -0.54 -20.60 5.16 -885.52 -4.57 -25.17 16 11 C 0.05 2.01 6.20 86.65 0.54 2.55 16 12 C -0.11 -5.49 5.91 31.87 0.19 -5.30 16 13 C 0.04 1.97 2.84 -10.06 -0.03 1.94 16 14 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 15 C -0.54 -30.20 8.50 25.60 0.22 -29.98 16 16 H 0.05 3.02 7.77 -2.91 -0.02 3.00 16 17 C 0.01 0.74 5.37 84.65 0.45 1.20 16 18 N -0.92 -54.35 12.61 21.45 0.27 -54.08 16 19 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.06 2.55 6.13 86.78 0.53 3.08 16 24 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.43 7.14 -2.39 -0.02 1.41 16 41 H 0.03 0.79 7.96 -2.39 -0.02 0.77 16 42 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 43 H 0.06 2.00 6.91 -2.39 -0.02 1.98 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.03 1.72 8.04 -2.38 -0.02 1.70 16 46 H 0.04 2.38 7.84 -2.39 -0.02 2.36 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.03 1.46 7.69 -2.39 -0.02 1.44 16 Total: -1.00 -59.90 379.71 2.71 -57.19 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.83 Total: 13.13 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 4.15 Total: -37.11 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -4.30 Total: -79.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.90 2.71 -57.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.879 kcal (2) G-P(sol) polarization free energy of solvation -59.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds