Wall clock time and date at job start Mon Mar 30 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46910 * 2 1 4 4 C 1.53003 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47260 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47519 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47410 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47238 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47081 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.46814 * 179.97438 * 9 8 7 11 11 C 1.47898 * 111.00343 * 69.87296 * 10 9 8 12 12 C 1.53988 * 107.06159 * 145.83929 * 11 10 9 13 13 C 1.54602 * 105.13912 * 358.77756 * 12 11 10 14 14 H 1.08996 * 110.72478 * 96.57616 * 13 12 11 15 15 C 1.50703 * 110.72291 * 219.68223 * 13 12 11 16 16 H 1.07994 * 119.99603 * 118.54410 * 15 13 12 17 17 C 1.37875 * 119.99838 * 298.54554 * 15 13 12 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.48540 * 110.99814 * 187.26856 * 10 9 8 24 24 H 1.08995 * 109.47391 * 300.00739 * 1 2 3 25 25 H 1.08999 * 109.46594 * 60.00446 * 1 2 3 26 26 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47391 * 239.99261 * 2 1 3 28 28 H 1.08999 * 109.46594 * 119.99554 * 2 1 3 29 29 H 1.09001 * 109.47471 * 59.99798 * 3 2 1 30 30 H 1.08999 * 109.47128 * 299.99228 * 3 2 1 31 31 H 1.09000 * 109.47381 * 60.00165 * 4 3 2 32 32 H 1.08999 * 109.47357 * 299.99364 * 4 3 2 33 33 H 1.09009 * 109.46994 * 59.99911 * 5 4 3 34 34 H 1.09003 * 109.47438 * 300.00452 * 5 4 3 35 35 H 1.09001 * 109.46743 * 60.00268 * 6 5 4 36 36 H 1.09003 * 109.47210 * 300.00684 * 6 5 4 37 37 H 1.08995 * 109.47458 * 59.99871 * 7 6 5 38 38 H 1.08999 * 109.47039 * 299.99851 * 7 6 5 39 39 H 1.08993 * 109.47824 * 59.99656 * 8 7 6 40 40 H 1.08999 * 109.46999 * 299.99291 * 8 7 6 41 41 H 1.09001 * 109.47416 * 59.99727 * 9 8 7 42 42 H 1.08999 * 109.47012 * 299.99261 * 9 8 7 43 43 H 1.09001 * 109.91519 * 26.48704 * 11 10 9 44 44 H 1.08998 * 109.91876 * 265.19613 * 11 10 9 45 45 H 1.08994 * 110.31488 * 239.86181 * 12 11 10 46 46 H 1.09004 * 110.30890 * 117.69102 * 12 11 10 47 47 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 48 48 H 1.09002 * 110.66781 * 81.83968 * 23 10 9 49 49 H 1.09001 * 110.66375 * 318.71545 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 6 7.6500 4.3274 0.0019 9 6 8.1600 5.7700 0.0026 10 7 9.6290 5.7699 0.0038 11 6 10.1602 5.2950 -1.2922 12 6 11.4596 6.0762 -1.5615 13 6 11.6095 7.0370 -0.3597 14 1 12.2737 6.6125 0.3931 15 6 12.1119 8.3836 -0.8129 16 1 11.5075 9.2652 -0.6589 17 6 13.3432 8.4899 -1.4242 18 7 14.0794 7.4164 -1.6113 19 14 13.9663 10.1591 -1.9854 20 1 12.9570 11.1990 -1.6607 21 1 14.1963 10.1341 -3.4523 22 1 15.2406 10.4713 -1.2898 23 6 10.1612 7.1455 0.1799 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 3.7163 3.3994 0.8896 34 1 3.7171 3.3984 -0.8904 35 1 5.9740 2.3705 -0.8881 36 1 5.9726 2.3717 0.8919 37 1 5.7560 4.8416 0.8907 38 1 5.7574 4.8410 -0.8892 39 1 8.0138 3.8135 -0.8877 40 1 8.0130 3.8138 0.8922 41 1 7.7963 6.2836 0.8925 42 1 7.7972 6.2840 -0.8875 43 1 9.4376 5.4919 -2.0842 44 1 10.3733 4.2274 -1.2374 45 1 11.3758 6.6415 -2.4896 46 1 12.3084 5.3939 -1.6085 47 1 13.7560 6.5496 -1.3195 48 1 10.1630 7.4253 1.2334 49 1 9.5841 7.8594 -0.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397694520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:57 Heat of formation + Delta-G solvation = -58.938341 kcal Electronic energy + Delta-G solvation = -19811.084593 eV Core-core repulsion = 16963.491344 eV Total energy + Delta-G solvation = -2847.593249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.37135 -37.17745 -35.44673 -33.73289 -32.31428 -30.28571 -28.35089 -28.10569 -25.52287 -23.90617 -22.80231 -21.50695 -21.13614 -20.86150 -20.08387 -19.34268 -16.80728 -16.43182 -15.69197 -15.15898 -14.74563 -14.41974 -14.28469 -13.82577 -13.74557 -13.54606 -13.30088 -12.87643 -12.60959 -12.48664 -12.08404 -11.92098 -11.83601 -11.55609 -11.46682 -11.29572 -11.12497 -11.00450 -10.91523 -10.81952 -10.74523 -10.61754 -10.52283 -10.30646 -10.19467 -10.07402 -9.77998 -9.36557 -8.46259 -8.32227 -7.80894 -6.31326 -4.03763 3.44500 3.48078 3.61483 4.27586 4.51189 4.54298 4.61724 4.70411 4.78044 4.91724 4.99672 5.02375 5.20974 5.25553 5.33575 5.39766 5.41673 5.46417 5.50915 5.59854 5.64488 5.67611 5.68346 5.73867 5.79789 5.85551 5.89543 5.90932 5.95435 5.97714 6.03738 6.11347 6.13861 6.18951 6.32394 6.36749 6.45670 6.45884 6.70913 6.95546 6.97839 7.28856 7.50275 7.65970 7.77420 8.28901 8.46493 8.91774 9.68934 11.07235 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.068400 B = 0.002101 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.258889 B =13321.114333 C =13435.608357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.113 4.113 9 C 0.048 3.952 10 N -0.525 5.525 11 C 0.039 3.961 12 C -0.121 4.121 13 C 0.036 3.964 14 H 0.028 0.972 15 C -0.596 4.596 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 1.072 2.928 20 H -0.290 1.290 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.049 3.951 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.274 0.726 48 H 0.063 0.937 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.760 -11.983 2.638 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.081 4.081 10 N -0.248 5.248 11 C -0.089 4.089 12 C -0.160 4.160 13 C 0.016 3.984 14 H 0.046 0.954 15 C -0.635 4.635 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.550 5.550 19 Si 0.901 3.099 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.213 1.213 23 C -0.078 4.078 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.332 -11.563 2.332 24.376 hybrid contribution -1.631 -0.260 0.022 1.652 sum -22.963 -11.823 2.355 25.935 Atomic orbital electron populations 1.21784 0.96016 1.01504 1.01774 1.21548 0.95757 0.97112 1.01965 1.21638 0.95652 0.96585 1.01985 1.21625 0.95113 0.97104 1.02021 1.21617 0.95721 0.96496 1.01929 1.21591 0.94924 0.97062 1.02045 1.21569 0.95759 0.96502 1.01791 1.21549 0.94157 0.96914 1.02451 1.22238 0.89385 0.96394 1.00095 1.64744 1.06097 1.22626 1.31383 1.22877 0.97247 0.99287 0.89462 1.22627 0.94238 0.97893 1.01235 1.19704 0.90776 0.95257 0.92617 0.95427 1.21998 1.05523 0.92762 1.43188 0.93249 1.25771 0.93592 1.04509 0.94593 1.70720 1.39664 0.99996 1.44642 0.83498 0.75595 0.74244 0.76532 1.21622 1.21448 1.21340 1.23226 0.97787 0.87230 0.99579 0.92796 0.92803 0.92878 0.92108 0.92110 0.92106 0.92107 0.92094 0.92073 0.92132 0.92156 0.92127 0.92033 0.92132 0.92332 0.92241 0.91437 0.91581 0.95386 0.95202 0.92019 0.92197 0.92817 0.91438 0.91865 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 4 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 5 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 6 C -0.12 -1.10 5.21 -26.74 -0.14 -1.24 16 7 C -0.12 -1.26 5.21 -26.73 -0.14 -1.40 16 8 C -0.11 -1.49 5.27 -26.73 -0.14 -1.63 16 9 C 0.05 0.76 4.76 -3.82 -0.02 0.74 16 10 N -0.52 -10.27 5.27 -230.45 -1.21 -11.48 16 11 C 0.04 0.78 5.79 -2.76 -0.02 0.76 16 12 C -0.12 -2.87 5.34 -25.37 -0.14 -3.01 16 13 C 0.04 0.92 2.62 -89.91 -0.24 0.68 16 14 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 15 C -0.60 -16.88 8.42 -34.44 -0.29 -17.17 16 16 H 0.05 1.40 7.78 -52.49 -0.41 0.99 16 17 C 0.02 0.57 5.33 -17.82 -0.10 0.47 16 18 N -0.91 -27.55 13.42 55.43 0.74 -26.80 16 19 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.05 1.08 5.95 -1.90 -0.01 1.07 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.81 7.52 -51.93 -0.39 0.42 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.03 0.45 7.82 -51.93 -0.41 0.05 16 43 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.51 7.84 -51.93 -0.41 1.11 16 46 H 0.05 1.30 6.97 -51.93 -0.36 0.93 16 47 H 0.27 8.18 5.53 -40.82 -0.23 7.95 16 48 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 49 H 0.04 0.79 7.92 -51.93 -0.41 0.38 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -29.29 377.01 -11.55 -40.84 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -10.25 Total: -3.27 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -1.43 Total: -25.27 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.47 Total: -38.28 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.29 -11.55 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.098 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds