Wall clock time and date at job start Mon Mar 30 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46910 * 2 1 4 4 C 1.53003 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47260 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47519 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47410 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47238 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47081 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.46814 * 179.97438 * 9 8 7 11 11 C 1.47898 * 111.00343 * 69.87296 * 10 9 8 12 12 C 1.53988 * 107.06159 * 145.83929 * 11 10 9 13 13 C 1.54602 * 105.13912 * 358.77756 * 12 11 10 14 14 H 1.08996 * 110.72478 * 96.57616 * 13 12 11 15 15 C 1.50703 * 110.72291 * 219.68223 * 13 12 11 16 16 H 1.07994 * 119.99603 * 118.54410 * 15 13 12 17 17 C 1.37875 * 119.99838 * 298.54554 * 15 13 12 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.48540 * 110.99814 * 187.26856 * 10 9 8 24 24 H 1.08995 * 109.47391 * 300.00739 * 1 2 3 25 25 H 1.08999 * 109.46594 * 60.00446 * 1 2 3 26 26 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47391 * 239.99261 * 2 1 3 28 28 H 1.08999 * 109.46594 * 119.99554 * 2 1 3 29 29 H 1.09001 * 109.47471 * 59.99798 * 3 2 1 30 30 H 1.08999 * 109.47128 * 299.99228 * 3 2 1 31 31 H 1.09000 * 109.47381 * 60.00165 * 4 3 2 32 32 H 1.08999 * 109.47357 * 299.99364 * 4 3 2 33 33 H 1.09009 * 109.46994 * 59.99911 * 5 4 3 34 34 H 1.09003 * 109.47438 * 300.00452 * 5 4 3 35 35 H 1.09001 * 109.46743 * 60.00268 * 6 5 4 36 36 H 1.09003 * 109.47210 * 300.00684 * 6 5 4 37 37 H 1.08995 * 109.47458 * 59.99871 * 7 6 5 38 38 H 1.08999 * 109.47039 * 299.99851 * 7 6 5 39 39 H 1.08993 * 109.47824 * 59.99656 * 8 7 6 40 40 H 1.08999 * 109.46999 * 299.99291 * 8 7 6 41 41 H 1.09001 * 109.47416 * 59.99727 * 9 8 7 42 42 H 1.08999 * 109.47012 * 299.99261 * 9 8 7 43 43 H 1.09001 * 109.91519 * 26.48704 * 11 10 9 44 44 H 1.08998 * 109.91876 * 265.19613 * 11 10 9 45 45 H 1.08994 * 110.31488 * 239.86181 * 12 11 10 46 46 H 1.09004 * 110.30890 * 117.69102 * 12 11 10 47 47 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 48 48 H 1.09002 * 110.66781 * 81.83968 * 23 10 9 49 49 H 1.09001 * 110.66375 * 318.71545 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 6 7.6500 4.3274 0.0019 9 6 8.1600 5.7700 0.0026 10 7 9.6290 5.7699 0.0038 11 6 10.1602 5.2950 -1.2922 12 6 11.4596 6.0762 -1.5615 13 6 11.6095 7.0370 -0.3597 14 1 12.2737 6.6125 0.3931 15 6 12.1119 8.3836 -0.8129 16 1 11.5075 9.2652 -0.6589 17 6 13.3432 8.4899 -1.4242 18 7 14.0794 7.4164 -1.6113 19 14 13.9663 10.1591 -1.9854 20 1 12.9570 11.1990 -1.6607 21 1 14.1963 10.1341 -3.4523 22 1 15.2406 10.4713 -1.2898 23 6 10.1612 7.1455 0.1799 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 3.7163 3.3994 0.8896 34 1 3.7171 3.3984 -0.8904 35 1 5.9740 2.3705 -0.8881 36 1 5.9726 2.3717 0.8919 37 1 5.7560 4.8416 0.8907 38 1 5.7574 4.8410 -0.8892 39 1 8.0138 3.8135 -0.8877 40 1 8.0130 3.8138 0.8922 41 1 7.7963 6.2836 0.8925 42 1 7.7972 6.2840 -0.8875 43 1 9.4376 5.4919 -2.0842 44 1 10.3733 4.2274 -1.2374 45 1 11.3758 6.6415 -2.4896 46 1 12.3084 5.3939 -1.6085 47 1 13.7560 6.5496 -1.3195 48 1 10.1630 7.4253 1.2334 49 1 9.5841 7.8594 -0.4078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397694520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:56 Heat of formation + Delta-G solvation = -72.813697 kcal Electronic energy + Delta-G solvation = -19811.686273 eV Core-core repulsion = 16963.491344 eV Total energy + Delta-G solvation = -2848.194929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01509 -37.89470 -36.44995 -35.28364 -33.52294 -31.59877 -30.09008 -29.27995 -26.66488 -25.75347 -23.83127 -22.35482 -21.99477 -21.82122 -21.50237 -21.02451 -18.90654 -17.23007 -16.92473 -16.34532 -16.20212 -15.69516 -15.33165 -15.16051 -14.83285 -14.51319 -14.43979 -14.11418 -13.89720 -13.64994 -13.40809 -13.15738 -13.02272 -12.77732 -12.53879 -12.37500 -12.31430 -12.13938 -11.96842 -11.91863 -11.88331 -11.74150 -11.71351 -11.57990 -11.39639 -11.33193 -11.29810 -10.98491 -10.58292 -10.49372 -9.39491 -8.60026 -6.33695 1.52565 1.61584 1.77816 2.56319 3.06508 3.20088 3.69806 3.92155 3.92858 3.99554 4.08469 4.13876 4.15914 4.27683 4.29628 4.33909 4.42893 4.48893 4.51882 4.59516 4.67261 4.74284 4.76219 4.79294 4.84200 4.86344 4.95415 4.97805 5.02099 5.04751 5.08284 5.11997 5.17142 5.20077 5.23156 5.28506 5.32438 5.38613 5.40738 5.48636 5.54367 5.56640 5.59845 5.80365 6.14152 6.18233 6.23854 6.65254 7.47551 8.78871 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.068400 B = 0.002101 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.258889 B =13321.114333 C =13435.608357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.105 4.105 9 C 0.046 3.954 10 N -0.528 5.528 11 C 0.050 3.950 12 C -0.113 4.113 13 C 0.023 3.977 14 H -0.002 1.002 15 C -0.611 4.611 16 H 0.046 0.954 17 C -0.030 4.030 18 N -0.937 5.937 19 Si 1.119 2.881 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.060 3.940 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.039 0.961 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.475 -12.000 2.631 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.143 4.143 9 C -0.082 4.082 10 N -0.252 5.252 11 C -0.078 4.078 12 C -0.152 4.152 13 C 0.004 3.996 14 H 0.016 0.984 15 C -0.649 4.649 16 H 0.064 0.936 17 C -0.228 4.228 18 N -0.575 5.575 19 Si 0.941 3.059 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.067 4.067 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.075 -11.597 2.337 25.931 hybrid contribution -1.114 -0.283 0.062 1.151 sum -24.189 -11.880 2.399 27.056 Atomic orbital electron populations 1.21787 0.95589 1.01863 1.01861 1.21551 0.96164 0.96780 1.01947 1.21616 0.95178 0.96904 1.01968 1.21598 0.95527 0.96590 1.01936 1.21576 0.94802 0.96989 1.02039 1.21550 0.95712 0.96049 1.01980 1.21511 0.93744 0.97533 1.02173 1.21484 0.95869 0.94775 1.02134 1.22373 0.86757 0.98460 1.00581 1.64757 1.08653 1.20707 1.31122 1.22782 0.95337 0.99549 0.90142 1.22418 0.96078 0.97390 0.99300 1.19699 0.92562 0.94581 0.92804 0.98380 1.22343 1.05812 0.93794 1.42936 0.93600 1.27224 0.94078 1.07183 0.94341 1.70835 1.40313 1.00180 1.46143 0.82900 0.75787 0.70605 0.76572 1.19775 1.20584 1.20523 1.22999 0.95408 0.88751 0.99552 0.92681 0.92752 0.92420 0.92177 0.92094 0.92058 0.92170 0.92251 0.92092 0.91917 0.92140 0.92317 0.92012 0.91555 0.92151 0.92592 0.91718 0.90637 0.95310 0.93797 0.90252 0.94366 0.94183 0.92600 0.91314 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.12 -1.42 5.21 30.59 0.16 -1.26 16 4 C -0.12 -1.56 5.21 30.60 0.16 -1.40 16 5 C -0.12 -1.66 5.21 30.59 0.16 -1.50 16 6 C -0.12 -1.90 5.21 30.59 0.16 -1.74 16 7 C -0.11 -2.11 5.21 30.59 0.16 -1.95 16 8 C -0.10 -2.53 5.27 30.60 0.16 -2.37 16 9 C 0.05 1.38 4.76 86.31 0.41 1.79 16 10 N -0.53 -20.00 5.27 -883.02 -4.65 -24.65 16 11 C 0.05 1.92 5.79 86.45 0.50 2.42 16 12 C -0.11 -5.45 5.34 31.47 0.17 -5.28 16 13 C 0.02 1.19 2.62 -10.33 -0.03 1.16 16 14 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 15 C -0.61 -35.04 8.42 25.60 0.22 -34.82 16 16 H 0.05 2.60 7.78 -2.91 -0.02 2.58 16 17 C -0.03 -1.71 5.33 84.65 0.45 -1.26 16 18 N -0.94 -57.60 13.42 21.45 0.29 -57.31 16 19 Si 1.12 50.84 29.90 68.60 2.05 52.89 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.06 2.64 5.95 86.65 0.52 3.16 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.40 7.52 -2.39 -0.02 1.38 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 2.11 8.11 -2.39 -0.02 2.10 16 42 H 0.03 0.86 7.82 -2.39 -0.02 0.85 16 43 H 0.04 1.57 7.57 -2.39 -0.02 1.56 16 44 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16 46 H 0.04 1.99 6.97 -2.39 -0.02 1.97 16 47 H 0.26 16.26 5.53 -92.71 -0.51 15.75 16 48 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 49 H 0.03 1.40 7.92 -2.39 -0.02 1.38 16 Total: -1.00 -62.64 377.01 2.87 -59.78 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.09 Total: 14.41 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 4.09 Total: -45.11 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -4.36 Total: -81.96 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -62.64 2.87 -59.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.038 kcal (2) G-P(sol) polarization free energy of solvation -62.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds