Wall clock time and date at job start Mon Mar 30 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47131 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.46854 * 110.99404 * 294.20455 * 8 7 6 10 10 C 1.53035 * 109.52033 * 174.15823 * 9 8 7 11 11 C 1.53117 * 109.27632 * 59.18530 * 10 9 8 12 12 C 1.53006 * 109.57663 * 182.40473 * 11 10 9 13 13 C 1.50700 * 109.47166 * 294.71735 * 12 11 10 14 14 H 1.07995 * 119.99599 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00045 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99864 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47474 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47076 * 119.99822 * 17 15 13 20 20 H 1.48500 * 109.47141 * 239.99565 * 17 15 13 21 21 C 1.53125 * 109.16116 * 302.34057 * 11 10 9 22 22 C 1.46847 * 111.00382 * 169.99981 * 8 7 6 23 23 H 1.08998 * 109.47076 * 60.00779 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47502 * 299.99847 * 1 2 3 26 26 H 1.09000 * 109.47611 * 239.99378 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99675 * 2 1 3 28 28 H 1.08996 * 109.47452 * 60.00000 * 3 2 1 29 29 H 1.09001 * 109.46997 * 299.99574 * 3 2 1 30 30 H 1.09001 * 109.47502 * 60.00153 * 4 3 2 31 31 H 1.09001 * 109.47289 * 299.99950 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 35 35 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 36 36 H 1.09001 * 109.46997 * 299.99574 * 7 6 5 37 37 H 1.08992 * 109.47534 * 59.99520 * 7 6 5 38 38 H 1.08998 * 109.46338 * 294.17854 * 9 8 7 39 39 H 1.09001 * 109.46277 * 54.14866 * 9 8 7 40 40 H 1.08996 * 109.50754 * 299.24032 * 10 9 8 41 41 H 1.09001 * 109.50317 * 179.11892 * 10 9 8 42 42 H 1.08998 * 109.52887 * 62.24447 * 11 10 9 43 43 H 1.09001 * 109.46519 * 54.71104 * 12 11 10 44 44 H 1.08998 * 109.47047 * 174.70991 * 12 11 10 45 45 H 0.96996 * 119.99663 * 180.02562 * 16 15 13 46 46 H 1.09004 * 109.50048 * 297.71551 * 21 11 10 47 47 H 1.08997 * 109.50203 * 177.59887 * 21 11 10 48 48 H 1.08997 * 109.45965 * 305.85403 * 22 8 7 49 49 H 1.08998 * 109.45940 * 65.82643 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1199 4.3275 -0.0026 8 7 7.5890 4.3275 -0.0044 9 6 8.1167 3.7649 1.2452 10 6 9.6394 3.6461 1.1495 11 6 10.2398 5.0321 0.8985 12 6 11.7571 4.9129 0.7420 13 6 12.3619 4.4543 2.0439 14 1 11.7275 4.2671 2.8976 15 6 13.7251 4.2738 2.1451 16 7 14.4975 4.5014 1.1053 17 14 14.4747 3.7061 3.7591 18 1 13.3995 3.5222 4.7668 19 1 15.1831 2.4179 3.5498 20 1 15.4376 4.7274 4.2440 21 6 9.6376 5.6161 -0.3825 22 6 8.1150 5.6777 -0.2426 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 3.7163 3.3986 -0.8913 33 1 3.7170 3.3991 0.8886 34 1 5.9741 2.3713 0.8872 35 1 5.9726 2.3710 -0.8928 36 1 5.7559 4.8415 -0.8922 37 1 5.7573 4.8411 0.8877 38 1 7.8549 4.4188 2.0770 39 1 7.6851 2.7776 1.4097 40 1 9.9017 2.9814 0.3265 41 1 10.0323 3.2431 2.0830 42 1 10.0107 5.6862 1.7397 43 1 11.9859 4.1887 -0.0398 44 1 12.1718 5.8837 0.4707 45 1 15.4564 4.3740 1.1764 46 1 9.8999 4.9823 -1.2297 47 1 10.0292 6.6205 -0.5437 48 1 7.6820 6.0798 -1.1585 49 1 7.8533 6.3226 0.5964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399740310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:16 Heat of formation + Delta-G solvation = -71.582215 kcal Electronic energy + Delta-G solvation = -20278.752549 eV Core-core repulsion = 17430.611021 eV Total energy + Delta-G solvation = -2848.141528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15528 -37.65116 -36.35540 -34.83390 -33.68928 -31.76107 -30.90764 -29.21674 -26.72307 -25.23858 -24.17015 -23.06261 -22.10068 -21.82617 -21.35596 -20.43774 -18.42945 -16.94445 -16.90122 -16.45181 -16.10335 -15.60727 -15.15915 -15.12847 -14.80909 -14.66767 -14.34144 -14.16637 -13.89250 -13.74928 -13.26633 -13.17801 -12.88983 -12.85344 -12.75406 -12.55435 -12.39824 -12.17025 -12.07972 -12.01500 -11.85622 -11.74009 -11.60808 -11.46027 -11.31019 -11.21115 -11.19844 -10.81135 -10.67242 -10.52112 -9.19253 -8.17550 -6.27167 1.39065 1.39221 1.52367 2.41462 2.98292 3.15389 3.80073 3.96385 4.04202 4.06214 4.08999 4.19502 4.20853 4.28318 4.41398 4.45787 4.50007 4.57374 4.62392 4.72308 4.74348 4.75819 4.81081 4.85387 4.89842 4.93517 5.03305 5.04441 5.07815 5.11298 5.15520 5.18876 5.25620 5.33433 5.34801 5.38473 5.41419 5.45620 5.47959 5.54659 5.57801 5.58334 5.81150 5.89350 6.20692 6.27373 6.32451 6.89014 7.41047 8.94575 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002666 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.480601 B =10499.019094 C =11200.151038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.112 4.112 7 C 0.057 3.943 8 N -0.549 5.549 9 C 0.065 3.935 10 C -0.094 4.094 11 C -0.076 4.076 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.962 3.038 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.107 4.107 22 C 0.066 3.934 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.046 0.954 43 H -0.012 1.012 44 H -0.014 1.014 45 H 0.262 0.738 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.466 -4.553 -2.303 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.070 4.070 8 N -0.274 5.274 9 C -0.063 4.063 10 C -0.132 4.132 11 C -0.094 4.094 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.145 4.145 22 C -0.061 4.061 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.006 0.994 44 H 0.004 0.996 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -26.148 -4.846 -2.738 26.733 hybrid contribution 0.932 0.325 1.248 1.591 sum -25.215 -4.520 -1.490 25.661 Atomic orbital electron populations 1.21781 0.95513 1.01835 1.01908 1.21558 0.96216 0.96895 1.01884 1.21598 0.94966 0.96824 1.02081 1.21580 0.95627 0.96532 1.01857 1.21499 0.94009 0.97111 1.02261 1.21567 0.95658 0.95632 1.02106 1.22159 0.85986 0.97889 1.00964 1.61933 1.08130 1.22182 1.35196 1.22074 0.94598 0.99817 0.89806 1.21419 0.94087 0.96775 1.00951 1.21096 0.95355 0.96358 0.96617 1.19019 0.91674 0.94336 0.95382 1.21672 0.92434 1.44281 0.98244 0.92217 1.25983 0.98123 0.95890 1.00156 1.70115 1.04862 1.50822 1.31806 0.85438 0.78438 0.77876 0.79540 1.18572 1.20464 1.20539 1.21604 0.94949 1.00338 0.97643 1.22014 0.94467 0.88876 1.00775 0.92591 0.92510 0.92693 0.92176 0.92305 0.92045 0.91862 0.92223 0.92451 0.91461 0.91950 0.92533 0.91964 0.90050 0.94984 0.95419 0.89779 0.93339 0.92612 0.93542 0.99397 0.99552 0.92952 0.92707 0.92003 0.89367 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.12 -1.46 5.21 30.59 0.16 -1.30 16 4 C -0.12 -1.69 5.21 30.60 0.16 -1.53 16 5 C -0.11 -1.66 5.21 30.60 0.16 -1.50 16 6 C -0.11 -2.15 5.14 30.59 0.16 -1.99 16 7 C 0.06 1.23 4.96 86.30 0.43 1.66 16 8 N -0.55 -15.45 4.66 -896.37 -4.17 -19.63 16 9 C 0.06 1.97 5.29 86.32 0.46 2.43 16 10 C -0.09 -3.67 5.15 30.65 0.16 -3.51 16 11 C -0.08 -3.22 2.20 -10.71 -0.02 -3.24 16 12 C 0.03 1.79 4.45 29.85 0.13 1.92 16 13 C -0.53 -30.50 8.45 25.60 0.22 -30.29 16 14 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 17 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 C -0.11 -3.84 5.38 30.65 0.16 -3.67 16 22 C 0.07 1.89 5.46 86.32 0.47 2.36 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.56 7.99 -2.39 -0.02 1.54 16 37 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 2.30 6.21 -2.39 -0.01 2.29 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 2.30 7.06 -2.39 -0.02 2.29 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.09 2.13 8.01 -2.39 -0.02 2.11 16 49 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -63.87 374.28 2.97 -60.90 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.84 Total: 10.19 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 4.00 Total: -40.73 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -3.89 Total: -77.54 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.87 2.97 -60.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399740310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.684 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds